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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoprotein complex biogenesis
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Accession:GO:0022613 term browser browse the term
Definition:A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex.
Synonyms:exact_synonym: RNA-protein complex biogenesis;   ribonucleoprotein complex biogenesis and assembly


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90S preribosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rpl38 ribosomal protein L38 JBrowse link 10 103,198,424 103,202,059 RGD:1624291
assembly of large subunit precursor of preribosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G RGD1560821 similar to small nuclear ribonucleoparticle-associated protein JBrowse link X 77,885,562 77,886,179 RGD:13792537
G Rpl24 ribosomal protein L24 JBrowse link 11 47,116,885 47,122,093 RGD:13792537
G Rsl24d1 ribosomal L24 domain containing 1 JBrowse link 8 79,792,587 79,801,592 RGD:13792537
box C/D snoRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nufip1 nuclear FMR1 interacting protein 1 JBrowse link 15 58,171,163 58,201,888 RGD:1624291
RGD:13792537
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:1624291
RGD:13792537
G Pih1d2 PIH1 domain containing 2 JBrowse link 8 55,050,284 55,060,289 RGD:13792537
G RGD1564855 similar to RuvB-like protein 1 JBrowse link X 1,854,580 1,856,333 RGD:13792537
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:13792537
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:1624291
G Taf9 TATA-box binding protein associated factor 9 JBrowse link 2 30,664,407 30,668,414 RGD:1624291
G Znhit3 zinc finger, HIT-type containing 3 JBrowse link 10 72,227,710 72,235,932 RGD:13792537
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:1624291
RGD:13792537
box H/ACA snoRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
RGD:13792537
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:13792537
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535027
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:1600115
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1600115
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
G Utp23 UTP23, small subunit processome component JBrowse link 7 91,384,329 91,389,605 RGD:1624291
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G AC135409.1 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Kri1 KRI1 homolog JBrowse link 8 22,301,025 22,317,049 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC135409.1 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like JBrowse link 3 112,519,789 112,524,281 RGD:13792537
G Rpusd1 RNA pseudouridine synthase domain containing 1 JBrowse link 10 15,099,104 15,102,968 RGD:13792537
G Rpusd2 RNA pseudouridine synthase domain containing 2 JBrowse link 3 110,835,654 110,840,903 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:1624291
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:13792537
G Eri3 ERI1 exoribonuclease family member 3 JBrowse link 5 136,406,009 136,533,408 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
formation of cytoplasmic translation initiation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta JBrowse link 3 150,391,455 150,412,179 RGD:13792537
G Eif3a eukaryotic translation initiation factor 3, subunit A JBrowse link 1 282,139,809 282,170,017 RGD:1624291
RGD:13792537
RGD:1600115
G Eif3b eukaryotic translation initiation factor 3, subunit B JBrowse link 12 16,285,730 16,310,190 RGD:1600115
G Eif3c eukaryotic translation initiation factor 3, subunit C JBrowse link 1 197,964,406 197,982,917 RGD:1600115
G Eif3d eukaryotic translation initiation factor 3, subunit D JBrowse link 7 119,188,189 119,200,578 RGD:1624291
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 JBrowse link 13 100,129,757 100,162,596 RGD:1600115
G Eif3f eukaryotic translation initiation factor 3, subunit F JBrowse link 1 173,532,826 173,541,806 RGD:1600115
G Eif3g eukaryotic translation initiation factor 3, subunit G JBrowse link 8 21,911,632 21,915,664 RGD:1600115
G Eif3h eukaryotic translation initiation factor 3, subunit H JBrowse link 6 10,151,732 10,236,677 RGD:1600115
G Eif3i eukaryotic translation initiation factor 3, subunit I JBrowse link 5 147,796,580 147,803,853 RGD:1600115
G Eif3j eukaryotic translation initiation factor 3, subunit J JBrowse link 3 113,976,687 113,998,925 RGD:1600115
G Eif3k eukaryotic translation initiation factor 3, subunit K JBrowse link 1 87,927,142 87,937,033 RGD:1600115
G Eif3m eukaryotic translation initiation factor 3, subunit M JBrowse link 3 94,990,086 95,007,690 RGD:1600115
G Eif5 eukaryotic translation initiation factor 5 JBrowse link 6 136,002,983 136,011,409 RGD:13792537
G LOC100365062 eukaryotic translation initiation factor 3, subunit 6 48kDa-like JBrowse link 1 66,643,731 66,645,224 RGD:1600115
G LOC100909481 eukaryotic translation initiation factor 3 subunit E-like JBrowse link 1 66,637,810 66,639,219 RGD:1600115
G LOC108348062 eukaryotic translation initiation factor 3 subunit H JBrowse link 6 108,698,680 108,756,289 RGD:1600115
G LOC108348260 eukaryotic translation initiation factor 3 subunit E RGD:1600115
G NEWGENE_619861 eukaryotic translation initiation factor 5 JBrowse link 6 136,002,962 136,011,409 RGD:13792537
formation of translation preinitiation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Denr density regulated reinitiation and release factor JBrowse link 12 38,095,717 38,117,758 RGD:1624291
RGD:13792537
G Dhx29 DExH-box helicase 29 JBrowse link 2 44,787,066 44,837,834 RGD:1624291
G Eif2d eukaryotic translation initiation factor 2D JBrowse link 13 47,935,138 47,958,459 RGD:1624291
RGD:13792537
G Eif2s2 eukaryotic translation initiation factor 2 subunit beta JBrowse link 3 150,391,455 150,412,179 RGD:13792537
G Eif2s3 eukaryotic translation initiation factor 2 subunit gamma JBrowse link X 63,268,106 63,291,125 RGD:13792537
G Eif2s3y eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked JBrowse link Y 914,062 933,699 RGD:13792537
G Eif5 eukaryotic translation initiation factor 5 JBrowse link 6 136,002,983 136,011,409 RGD:728212
RGD:13792537
RGD:10755758
G Mcts1 MCTS1, re-initiation and release factor JBrowse link X 124,894,269 124,906,129 RGD:1624291
RGD:13792537
G NEWGENE_619861 eukaryotic translation initiation factor 5 JBrowse link 6 136,002,962 136,011,409 RGD:13792537
G Rps2 ribosomal protein S2 JBrowse link 10 14,088,171 14,090,020 RGD:2299070
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:13792537
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:13792537
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07052587.1 RGD:13792537
G AABR07064102.1 RGD:13792537
G AABR07064998.2 RGD:13792537
G AABR07065012.1 RGD:13792537
G AABR07065013.1 RGD:13792537
G C1d C1D nuclear receptor corepressor JBrowse link 14 100,415,645 100,427,878 RGD:1624291
RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mphosph6 M phase phosphoprotein 6 JBrowse link 19 50,357,314 50,367,137 RGD:1624291
RGD:13792537
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
RGD:13792537
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:1624291
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:1600115
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1624291
RGD:13792537
RGD:1600115
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07003273.1 RGD:13792537
G AABR07006536.1 RGD:13792537
G AABR07007121.1 RGD:13792537
G AABR07018167.1 RGD:13792537
G AABR07027819.1 RGD:13792537
G AABR07029262.1 RGD:13792537
G AABR07030630.1 RGD:13792537
G AABR07045321.1 RGD:13792537
G AABR07049918.1 RGD:13792537
G AABR07052519.1 RGD:13792537
G AABR07052587.1 RGD:13792537
G AABR07054456.1 RGD:13792537
G AABR07057586.1 RGD:13792537
G AC094246.2 RGD:13792537
G AC128901.1 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100359687 mitochondrial ribosomal protein L1-like JBrowse link 8 56,411,909 56,502,073 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G LOC103690888 60S ribosomal protein L10a-like JBrowse link X 112,555,128 112,555,864 RGD:13792537
G LOC108348298 ribosomal L1 domain-containing protein 1-like JBrowse link 10 4,487,809 4,499,727 RGD:13792537
G LOC108349606 60S ribosomal protein L7a-like JBrowse link 1 166,282,044 166,282,845 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mrpl1 mitochondrial ribosomal protein L1 JBrowse link 14 14,951,507 15,008,136 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl10a ribosomal protein L10A JBrowse link 20 7,908,309 7,910,867 RGD:13792537
G Rpl7a ribosomal protein L7a JBrowse link 3 5,458,985 5,461,627 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 JBrowse link 10 4,447,239 4,459,125 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07013798.1 RGD:13792537
G AABR07030263.1 RGD:13792537
G AABR07037343.1 RGD:13792537
G AABR07073381.1 RGD:13792537
G AC103056.1 RGD:13792537
G AC121415.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx18 DEAD-box helicase 18 JBrowse link 13 37,522,558 37,536,066 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:1624291
G Nifk nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 13 34,267,442 34,277,543 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:13792537
RGD:1600115
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:13792537
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:13792537
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:13792537
RGD:1600115
G Rpl7l1 ribosomal protein L7-like 1 JBrowse link 9 16,508,477 16,516,502 RGD:13792537
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1600115
RGD:13792537
RGD:1624291
G Znhit3 zinc finger, HIT-type containing 3 JBrowse link 10 72,227,710 72,235,932 RGD:13792537
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:13792537
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:13792537
G Helq helicase, POLQ-like JBrowse link 14 10,446,981 10,491,042 RGD:13792537
G LOC100359503 ribosomal protein S28-like JBrowse link 16 70,644,459 70,644,750 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:13792537
G Nol11 nucleolar protein 11 JBrowse link 10 95,388,223 95,408,053 RGD:1624291
G Nop14 NOP14 nucleolar protein JBrowse link 14 81,340,141 81,361,277 RGD:13792537
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
RGD:13792537
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
RGD:13792537
G Riok3 RIO kinase 3 JBrowse link 18 3,565,166 3,590,739 RGD:1624291
RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:1600115
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
G Srfbp1 serum response factor binding protein 1 JBrowse link 18 47,456,406 47,478,967 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1624291
G Wdr3 WD repeat domain 3 JBrowse link 2 202,447,749 202,470,398 RGD:13792537
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005506.1 RGD:13792537
G AABR07056611.1 RGD:13792537
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:1624291
RGD:1600115
G Dcaf13 DDB1 and CUL4 associated factor 13 JBrowse link 7 78,005,232 78,040,220 RGD:13792537
G Dhx37 DEAH-box helicase 37 JBrowse link 12 36,594,058 36,614,165 RGD:13792537
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G Fam207a family with sequence similarity 207, member A JBrowse link 20 11,863,145 11,896,833 RGD:1600115
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:13792537
G LOC100363452 ribosomal protein S8-like JBrowse link 3 103,192,670 103,193,343 RGD:13792537
G LOC100911847 40S ribosomal protein S14-like JBrowse link 5 144,083,030 144,083,602 RGD:13792537
G LOC108348069 HEAT repeat-containing protein 1 JBrowse link 17 66,578,885 66,619,465 RGD:13792537
G LOC297756 ribosomal protein S8-like JBrowse link 5 2,799,565 2,803,855 RGD:13792537
G Mrps11 mitochondrial ribosomal protein S11 JBrowse link 1 140,477,645 140,487,249 RGD:13792537
G NEWGENE_1562416 TSR2, ribosome maturation factor JBrowse link X 20,224,112 20,232,647 RGD:13792537
G Ngdn neuroguidin JBrowse link 15 33,677,333 33,684,840 RGD:13792537
G Nol10 nucleolar protein 10 JBrowse link 6 42,656,661 42,745,099 RGD:13792537
G Pwp2 PWP2, small subunit processome component JBrowse link 20 11,228,892 11,243,204 RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:13792537
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:13792537
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps8 ribosomal protein S8 JBrowse link 5 136,020,941 136,023,511 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
G Tsr2 TSR2, ribosome maturation factor JBrowse link X 20,141,406 20,146,082 RGD:13792537
G Utp25 UTP25, small subunit processor component JBrowse link 13 111,828,052 111,849,654 RGD:13792537
G Utp3 UTP3, small subunit processome component JBrowse link 14 21,153,998 21,155,652 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:13792537
G Utp6 UTP6 small subunit processome component JBrowse link 10 67,255,177 67,285,754 RGD:13792537
G Wdr46 WD repeat domain 46 JBrowse link 20 5,447,860 5,455,632 RGD:13792537
mature ribosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Efl1 elongation factor like GTPase 1 JBrowse link 1 144,601,425 144,740,634 RGD:1624291
RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1624291
RGD:1600115
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
RGD:1600115
messenger ribonucleoprotein complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link 1 226,572,399 226,596,185 RGD:1600115
RGD:1624291
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1600115
RGD:1624291
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1624291
RGD:1600115
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1600115
RGD:1624291
G Ago3 argonaute RISC catalytic component 3 JBrowse link 5 144,355,792 144,436,509 RGD:1624291
G Ago4 argonaute RISC component 4 JBrowse link 5 144,501,875 144,557,165 RGD:1624291
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx28 DEAD-box helicase 28 JBrowse link 19 37,988,423 37,990,353 RGD:1624291
RGD:13792537
G Dhx30 DExH-box helicase 30 JBrowse link 8 118,160,315 118,194,674 RGD:1624291
RGD:1600115
G Fastkd2 FAST kinase domains 2 JBrowse link 9 70,448,386 70,471,420 RGD:1624291
RGD:1600115
mitochondrial ribosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 JBrowse link 16 20,432,734 20,435,125 RGD:1624291
RGD:13792537
G Mrps2 mitochondrial ribosomal protein S2 JBrowse link 3 7,051,695 7,056,726 RGD:1624291
G Mterf3 mitochondrial transcription termination factor 3 JBrowse link 7 71,275,544 71,293,842 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:13792537
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf39 pre-mRNA processing factor 39 JBrowse link 6 86,785,793 86,810,806 RGD:13792537
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:1624291
RGD:1600115
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:1624291
RGD:13792537
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:13792537
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:1624291
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:1624291
RGD:13792537
G Celf2 CUGBP, Elav-like family member 2 JBrowse link 17 75,259,269 75,660,154 RGD:1624291
RGD:13792537
RGD:1600115
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:13792537
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
RGD:13792537
G Celf5 CUGBP, Elav-like family member 5 JBrowse link 7 11,095,449 11,119,941 RGD:13792537
G Celf6 CUGBP, Elav-like family member 6 JBrowse link 8 64,364,491 64,428,452 RGD:13792537
G Khdc4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 2 188,051,657 188,080,280 RGD:1624291
G Luc7l LUC7-like JBrowse link 10 15,538,878 15,572,651 RGD:13792537
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor JBrowse link 4 66,290,319 66,357,970 RGD:13792537
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor JBrowse link 10 81,991,147 82,027,119 RGD:13792537
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Nol3 nucleolar protein 3 JBrowse link 19 37,232,567 37,236,668 RGD:1624291
RGD:1600115
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link 2 223,261,444 223,323,075 RGD:1624291
G Puf60 poly-U binding splicing factor 60 JBrowse link 7 117,129,237 117,140,234 RGD:13792537
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:2316827
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
G Setx senataxin JBrowse link 3 7,680,430 7,731,815 RGD:1624291
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
RGD:13792537
RGD:1600115
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1624291
RGD:1600115
negative regulation of formation of translation preinitiation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rpl13a ribosomal protein L13A JBrowse link 1 101,120,325 101,123,401 RGD:1624291
RGD:1600115
negative regulation of ribosome biogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 JBrowse link 4 78,735,279 78,744,102 RGD:13792537
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:1624291
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:1624291
positive regulation of ribosomal small subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:1624291
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:1624291
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1624291
G Wdr75 WD repeat domain 75 JBrowse link 9 52,687,845 52,717,808 RGD:1624291
positive regulation of telomerase catalytic core complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Atr ATR serine/threonine kinase JBrowse link 8 103,673,578 103,770,886 RGD:1624291
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:13792537
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link 1 143,583,675 143,589,563 RGD:1624291
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9588272
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1624291
ribonucleoprotein complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC135822.2 RGD:13792537
G Ckap5 cytoskeleton associated protein 5 JBrowse link 3 80,424,320 80,526,583 RGD:1624291
G LOC682793 similar to 60S ribosomal protein L38 RGD:13792537
G LOC685963 similar to 60S ribosomal protein L38 JBrowse link 3 164,002,409 164,002,748 RGD:13792537
G LOC690468 similar to 60S ribosomal protein L38 JBrowse link 2 199,478,992 199,479,316 RGD:13792537
G Rpl38 ribosomal protein L38 JBrowse link 10 103,198,424 103,202,059 RGD:13792537
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:1624291
ribosomal large subunit assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07021384.1 RGD:13792537
G AABR07061158.1 RGD:13792537
G AABR07064667.1 RGD:13792537
G AABR07070060.2 RGD:13792537
G AC120310.1 RGD:13792537
G AC123138.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Brix1 biogenesis of ribosomes BRX1 JBrowse link 2 60,450,547 60,461,425 RGD:13792537
G LOC102555453 60S ribosomal protein L12-like JBrowse link X 1,345,540 1,346,244 RGD:13792537
G LOC689899 similar to 60S ribosomal protein L23a JBrowse link 14 24,129,598 24,130,134 RGD:13792537
G Mdn1 midasin AAA ATPase 1 JBrowse link 5 47,894,526 48,036,071 RGD:1600115
G mrpl11 mitochondrial ribosomal protein L11 JBrowse link 1 220,243,469 220,246,340 RGD:13792537
G Mrpl20 mitochondrial ribosomal protein L20 JBrowse link 5 173,248,245 173,252,775 RGD:13792537
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:1600115
G Nle1 notchless homolog 1 JBrowse link 10 70,250,959 70,261,880 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:1624291
RGD:13792537
G Ppan peter pan homolog JBrowse link 8 21,905,865 21,909,845 RGD:13792537
G RGD1560821 similar to small nuclear ribonucleoparticle-associated protein JBrowse link X 77,885,562 77,886,179 RGD:13792537
G RGD1564606 similar to 60S ribosomal protein L23a JBrowse link 2 38,230,697 38,231,287 RGD:13792537
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:13792537
G Rpl10 ribosomal protein L10 JBrowse link X 156,438,251 156,440,461 RGD:13792537
G Rpl10l ribosomal protein L10-like JBrowse link 6 88,231,273 88,232,549 RGD:13792537
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
RGD:1600115
RGD:13792537
G Rpl12 ribosomal protein L12 JBrowse link 3 12,009,578 12,011,952 RGD:13792537
G Rpl23a ribosomal protein L23a JBrowse link 10 65,441,295 65,443,981 RGD:13792537
G Rpl24 ribosomal protein L24 JBrowse link 11 47,116,885 47,122,093 RGD:1624291
RGD:13792537
G Rpl3 ribosomal protein L3 JBrowse link 7 121,297,365 121,302,739 RGD:13792537
G Rpl3l ribosomal protein L3-like JBrowse link 10 14,094,769 14,105,312 RGD:13792537
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
RGD:13792537
G Rpl6 ribosomal protein L6 JBrowse link 12 40,877,578 40,882,032 RGD:13792537
G Rplp0 ribosomal protein lateral stalk subunit P0 JBrowse link 12 46,791,528 46,794,797 RGD:13792537
G Rplp0l1 ribosomal protein lateral stalk subunit P0 like 1 JBrowse link 2 206,902,776 206,903,920 RGD:13792537
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:1624291
RGD:1600115
G Rsl24d1 ribosomal L24 domain containing 1 JBrowse link 8 79,792,587 79,801,592 RGD:13792537
ribosomal large subunit biogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007744.2 RGD:13792537
G AABR07027015.1 RGD:13792537
G AABR07030122.1 RGD:13792537
G AABR07041089.1 RGD:13792537
G AABR07053188.1 RGD:13792537
G AABR07055527.1 RGD:13792537
G AABR07064810.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Ebna1bp2 EBNA1 binding protein 2 JBrowse link 5 137,458,692 137,463,255 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
G Gtf3a general transcription factor III A JBrowse link 12 9,856,841 9,864,791 RGD:1624291
RGD:1600115
G Heatr3 HEAT repeat containing 3 JBrowse link 19 19,858,419 19,896,782 RGD:13792537
G LOC100910721 60S ribosomal protein L26-like JBrowse link 19 9,024,466 9,024,907 RGD:13792537
G LOC103690996 uncharacterized LOC103690996 JBrowse link 12 7,424,216 7,424,741 RGD:13792537
G LOC108348080 probable rRNA-processing protein EBP2 JBrowse link 5 137,670,134 137,674,730 RGD:13792537
G LOC108349682 60S ribosomal protein L35a JBrowse link 1 219,395,235 219,395,704 RGD:13792537
G LOC306079 similar to RIKEN cDNA 3100001N19 JBrowse link 15 62,520,953 62,532,175 RGD:13792537
G LOC688981 similar to 60S ribosomal protein L26 (Silica-induced gene 20 protein) (SIG-20) JBrowse link 6 96,202,039 96,204,610 RGD:13792537
G Lto1 LTO1 maturation factor of ABCE1 JBrowse link 1 218,075,995 218,082,700 RGD:1624291
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 JBrowse link 4 78,735,279 78,744,102 RGD:1624291
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Nip7 nucleolar pre-rRNA processing protein NIP7 JBrowse link 19 39,257,586 39,259,728 RGD:13792537
G Nle1 notchless homolog 1 JBrowse link 10 70,250,959 70,261,880 RGD:1624291
G Noc2l NOC2-like nucleolar associated transcriptional repressor JBrowse link 5 173,659,796 173,672,699 RGD:13792537
G Nop16 NOP16 nucleolar protein JBrowse link 17 10,559,811 10,564,728 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
G Pak1ip1 PAK1 interacting protein 1 JBrowse link 17 21,579,987 21,591,064 RGD:1624291
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:1624291
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
G Rpl14 ribosomal protein L14 JBrowse link 8 129,240,528 129,243,400 RGD:1624291
RGD:13792537
G Rpl26 ribosomal protein L26 JBrowse link 10 55,492,417 55,495,547 RGD:1624291
RGD:13792537
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:1624291
RGD:13792537
G Rpl35al1 ribosomal protein L35a-like 1 JBrowse link 12 7,186,459 7,186,874 RGD:13792537
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:1624291
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:1624291
RGD:13792537
G Sdad1 SDA1 domain containing 1 JBrowse link 14 17,247,381 17,274,228 RGD:1600115
G Surf6 surfeit 6 JBrowse link 3 5,441,404 5,452,156 RGD:13792537
G Wdr74 WD repeat domain 74 JBrowse link 1 224,933,906 224,938,659 RGD:1624291
RGD:13792537
G Zfp622 zinc finger protein 622 JBrowse link 2 78,407,312 78,421,152 RGD:13792537
ribosomal large subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007744.2 RGD:13792537
G AABR07041089.1 RGD:13792537
G AABR07055527.1 RGD:13792537
G Nmd3 NMD3 ribosome export adaptor JBrowse link 2 166,402,838 166,428,331 RGD:1624291
RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
G Sdad1 SDA1 domain containing 1 JBrowse link 14 17,247,381 17,274,228 RGD:1600115
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
RGD:13792537
G Zfp593 zinc finger protein 593 JBrowse link 5 152,462,522 152,464,850 RGD:13792537
ribosomal small subunit assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005506.1 RGD:13792537
G AABR07005886.1 RGD:13792537
G AABR07040944.1 RGD:13792537
G AABR07056611.1 RGD:13792537
G AC117101.1 RGD:13792537
G Eral1 Era-like 12S mitochondrial rRNA chaperone 1 JBrowse link 10 65,272,849 65,291,070 RGD:1600115
RGD:13792537
RGD:1624291
G LOC100359503 ribosomal protein S28-like JBrowse link 16 70,644,459 70,644,750 RGD:13792537
G LOC100362339 ribosomal protein S19-like JBrowse link 17 54,057,935 54,058,462 RGD:13792537
G LOC100362987 ribosomal protein S27-like JBrowse link 9 10,737,524 10,737,845 RGD:13792537
G LOC100911847 40S ribosomal protein S14-like JBrowse link 5 144,083,030 144,083,602 RGD:13792537
G LOC103690015 40S ribosomal protein S19-like JBrowse link 1 77,541,352 77,541,835 RGD:13792537
G LOC500594 LRRGT00162 JBrowse link 5 169,632,527 169,637,356 RGD:13792537
G LOC502176 hypothetical protein LOC502176 JBrowse link 18 60,729,517 60,767,280 RGD:13792537
G Mrps11 mitochondrial ribosomal protein S11 JBrowse link 1 140,477,645 140,487,249 RGD:13792537
G Mrps7 mitochondrial ribosomal protein S7 JBrowse link 10 104,155,805 104,158,840 RGD:13792537
G Pwp2 PWP2, small subunit processome component JBrowse link 20 11,228,892 11,243,204 RGD:13792537
G Rps10 ribosomal protein S10 JBrowse link 20 7,215,762 7,220,331 RGD:2299075
RGD:13792537
G Rps10l1 ribosomal protein S10-like 1 JBrowse link 6 75,429,715 75,430,282 RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:2299075
RGD:13792537
RGD:1600115
RGD:1624291
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:2299075
RGD:13792537
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
RGD:13792537
G Rps19l2 ribosomal protein S19-like2 JBrowse link 9 16,802,280 16,807,982 RGD:13792537
G Rps2 ribosomal protein S2 JBrowse link 10 14,088,171 14,090,020 RGD:2299075
G Rps25 ribosomal protein s25 JBrowse link 8 48,727,346 48,729,722 RGD:2299075
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:13792537
G Rps27l ribosomal protein S27-like JBrowse link 8 72,741,155 72,746,090 RGD:13792537
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:13792537
G Rps5 ribosomal protein S5 JBrowse link 1 65,660,470 65,664,767 RGD:13792537
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:2299075
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:13792537
G Rrp7a ribosomal RNA processing 7 homolog A JBrowse link 7 123,980,251 123,990,139 RGD:13792537
ribosomal small subunit biogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007744.2 RGD:13792537
G AABR07041089.1 RGD:13792537
G AABR07055527.1 RGD:13792537
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G LOC100362830 ribosomal protein S7-like JBrowse link 5 169,021,517 169,022,178 RGD:13792537
G Ltv1 LTV1 ribosome biogenesis factor JBrowse link 1 7,323,043 7,335,766 RGD:13792537
G Nom1 nucleolar protein with MIF4G domain 1 JBrowse link 4 2,340,034 2,356,427 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps24 ribosomal protein S24 JBrowse link 16 757,390 762,091 RGD:1624291
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:1624291
RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1624291
G Surf6 surfeit 6 JBrowse link 3 5,441,404 5,452,156 RGD:13792537
ribosomal small subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007744.2 RGD:13792537
G AABR07041089.1 RGD:13792537
G AABR07055527.1 RGD:13792537
G Ltv1 LTV1 ribosome biogenesis factor JBrowse link 1 7,323,043 7,335,766 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:1624291
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
RGD:13792537
ribosomal subunit export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07044495.1 RGD:13792537
G Abce1 ATP binding cassette subfamily E member 1 JBrowse link 19 31,867,960 31,892,863 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:1600115
RGD:13792537
G Lsg1 large 60S subunit nuclear export GTPase 1 JBrowse link 11 73,693,862 73,723,457 RGD:13792537
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:13792537
G Rasl2-9 RAS-like, family 2, locus 9 JBrowse link 1 72,272,032 72,273,210 RGD:13792537
G RGD1306195 similar to RAN protein JBrowse link 5 54,480,783 54,482,159 RGD:13792537
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
ribosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx29 DExH-box helicase 29 JBrowse link 2 44,787,066 44,837,834 RGD:1624291
G Eif2a eukaryotic translation initiation factor 2A JBrowse link 2 148,722,343 148,755,781 RGD:1624291
G Mrpl22 mitochondrial ribosomal protein L22 JBrowse link 10 43,601,786 43,612,119 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1624291
G Nip7 nucleolar pre-rRNA processing protein NIP7 JBrowse link 19 39,257,586 39,259,728 RGD:1600115
ribosome biogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042323.1 RGD:1600115
G Aatf apoptosis antagonizing transcription factor JBrowse link 10 71,744,648 71,837,851 RGD:1624291
G Abcf1 ATP binding cassette subfamily F member 1 JBrowse link 20 3,309,914 3,322,828 RGD:1624291
RGD:1600115
G Cebpz CCAAT/enhancer binding protein zeta JBrowse link 6 1,516,804 1,534,488 RGD:1600115
G Cul4a cullin 4A JBrowse link 16 81,718,784 81,756,653 RGD:1624291
G Cul4b cullin 4B JBrowse link X 124,831,391 124,870,329 RGD:1624291
G Ddx31 DEAD-box helicase 31 JBrowse link 3 7,422,871 7,488,299 RGD:1624291
RGD:13792537
G Glul glutamate-ammonia ligase JBrowse link 13 71,331,052 71,340,207 RGD:1624291
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:1600115
G Isg20l2 interferon stimulated exonuclease gene 20-like 2 JBrowse link 2 187,302,192 187,311,677 RGD:1600115
G LOC100910528 39S ribosomal protein L36, mitochondrial-like JBrowse link 1 32,569,844 32,573,188 RGD:13792537
G Mrpl10 mitochondrial ribosomal protein L10 JBrowse link 10 84,976,377 84,984,793 RGD:1600115
G Mrpl36 mitochondrial ribosomal protein L36 JBrowse link 1 31,261,370 31,264,715 RGD:13792537
G Mybbp1a MYB binding protein 1a JBrowse link 10 59,000,400 59,010,794 RGD:1600115
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
RGD:13792537
RGD:1624291
G Noc4l nucleolar complex associated 4 homolog JBrowse link 12 52,072,190 52,076,728 RGD:1600115
G Nop58 NOP58 ribonucleoprotein JBrowse link 9 66,495,881 66,520,521 RGD:1600115
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
G Rbis ribosomal biogenesis factor JBrowse link 2 88,338,018 88,350,785 RGD:1624291
G RGD1566078 similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) JBrowse link X 152,781,177 152,781,621 RGD:1600115
G Riox2 ribosomal oxygenase 2 JBrowse link 11 43,006,190 43,028,722 RGD:1600115
G Rpl7a ribosomal protein L7a JBrowse link 3 5,458,985 5,461,627 RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
RGD:1600115
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor JBrowse link 10 3,170,387 3,214,648 RGD:1624291
G Surf6 surfeit 6 JBrowse link 3 5,441,404 5,452,156 RGD:1624291
G Urb2 URB2 ribosome biogenesis homolog JBrowse link 19 56,802,843 56,827,017 RGD:13792537
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:1624291
G Znf658 zinc finger protein 658 JBrowse link 13 13,579,706 13,734,552 RGD:1624291
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
RGD:13792537
rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrm1 mitochondrial rRNA methyltransferase 1 JBrowse link 10 72,136,241 72,143,075 RGD:1600115
G Mrm3 mitochondrial rRNA methyltransferase 3 JBrowse link 10 64,398,308 64,406,193 RGD:1600115
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:13792537
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:13792537
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 JBrowse link 8 55,196,758 55,201,610 RGD:13792537
G Mettl15 methyltransferase like 15 JBrowse link 3 100,186,106 100,366,148 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
RGD:1624291
rRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007744.2 RGD:13792537
G AABR07041089.1 RGD:13792537
G AABR07055527.1 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
RGD:13792537
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:1624291
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmt2 base methyltransferase of 25S rRNA 2 homolog JBrowse link 4 40,064,131 40,136,074 RGD:1600115
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
RGD:13792537
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1600115
RGD:13792537
RGD:1624291
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mettl5 methyltransferase like 5 JBrowse link 3 56,101,597 56,113,823 RGD:1624291
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:1600115
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
RGD:13792537
G Tfb1m transcription factor B1, mitochondrial JBrowse link 1 44,433,116 44,474,674 RGD:1600115
RGD:13792537
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link 14 60,511,494 60,553,167 RGD:1600115
RGD:13792537
RGD:1624291
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:13792537
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1600115
G Ddx10 DEAD-box helicase 10 JBrowse link 8 57,667,472 57,830,504 RGD:13792537
G Ddx21 DExD-box helicase 21 JBrowse link 20 32,213,147 32,232,632 RGD:1600115
G Ddx27 DEAD-box helicase 27 JBrowse link 3 163,767,236 163,786,408 RGD:1624291
G Ddx47 DEAD-box helicase 47 JBrowse link 4 168,775,134 168,787,594 RGD:1624291
RGD:13792537
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:13792537
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:704356
G Ddx54 DEAD-box helicase 54 JBrowse link 12 41,469,642 41,484,887 RGD:13792537
G Ebna1bp2 EBNA1 binding protein 2 JBrowse link 5 137,458,692 137,463,255 RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog JBrowse link 3 133,178,591 133,232,358 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1600115
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link 8 61,607,021 61,607,909 RGD:1624291
RGD:13792537
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 JBrowse link 9 37,769,959 37,775,097 RGD:13792537
G Krr1 KRR1, small subunit processome component homolog JBrowse link 7 54,756,043 54,767,477 RGD:1600115
G LOC100362830 ribosomal protein S7-like JBrowse link 5 169,021,517 169,022,178 RGD:13792537
G LOC108348080 probable rRNA-processing protein EBP2 JBrowse link 5 137,670,134 137,674,730 RGD:13792537
G Lyar Ly1 antibody reactive JBrowse link 14 77,308,211 77,321,931 RGD:1600115
RGD:13792537
RGD:1624291
G Mphosph10 M-phase phosphoprotein 10 JBrowse link 1 125,212,869 125,229,060 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1600115
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
G Nol6 nucleolar protein 6 JBrowse link 5 57,444,448 57,473,803 RGD:13792537
G Nol8 nucleolar protein 8 JBrowse link 17 14,565,794 14,589,154 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:13792537
G Npm3 nucleophosmin/nucleoplasmin, 3 JBrowse link 1 265,504,105 265,506,080 RGD:1624291
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
G Pa2g4 proliferation-associated 2G4 JBrowse link 7 2,979,587 2,987,055 RGD:1600115
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:13792537
G Pih1d2 PIH1 domain containing 2 JBrowse link 8 55,050,284 55,060,289 RGD:13792537
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link X 72,004,413 72,011,667 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:13792537
G Rbfa ribosome binding factor A JBrowse link 18 76,704,223 76,714,387 RGD:1600115
G Rexo4 REX4 homolog, 3'-5' exonuclease JBrowse link 3 5,500,578 5,510,908 RGD:1600115
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:2291995
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
RGD:1600115
G Rpl14 ribosomal protein L14 JBrowse link 8 129,240,528 129,243,400 RGD:1624291
G Rpl26 ribosomal protein L26 JBrowse link 10 55,492,417 55,495,547 RGD:1624291
G Rpl27 ribosomal protein L27 JBrowse link 10 89,352,864 89,356,563 RGD:1624291
RGD:1600115
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:1624291
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1600115
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps24 ribosomal protein S24 JBrowse link 16 757,390 762,091 RGD:1624291
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:1624291
RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:1624291
RGD:13792537
G Rrp1 ribosomal RNA processing 1 JBrowse link 20 10,982,016 10,993,260 RGD:13792537
G Rrp12 ribosomal RNA processing 12 homolog JBrowse link 1 261,106,768 261,140,416 RGD:13792537
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1624291
G Rrp7a ribosomal RNA processing 7 homolog A JBrowse link 7 123,980,251 123,990,139 RGD:13792537
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1600115
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 8 115,179,899 115,188,551 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
G Utp11 UTP11, small subunit processome component JBrowse link 5 142,666,288 142,681,173 RGD:1600115
G Utp14a UTP14A small subunit processome component JBrowse link X 135,092,123 135,117,409 RGD:1600115
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:13792537
G Utp20 UTP20 small subunit processome component JBrowse link 7 29,296,360 29,378,105 RGD:1624291
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:1600115
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:1600115
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wdr36 WD repeat domain 36 JBrowse link 18 25,637,475 25,665,801 RGD:13792537
G Wdr55 WD repeat domain 55 JBrowse link 18 29,605,217 29,608,730 RGD:1600115
RGD:13792537
G Wdr74 WD repeat domain 74 JBrowse link 1 224,933,906 224,938,659 RGD:1624291
G Ybey ybeY metalloendoribonuclease JBrowse link 20 12,917,111 12,926,587 RGD:1600115
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
siRNA loading onto RISC involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
small RNA loading onto RISC term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
small-subunit processome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Xrcc5 X-ray repair cross complementing 5 JBrowse link 9 79,659,275 79,748,050 RGD:1624291
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633420
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:633420
RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:633420
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:633420
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link 6 18,349,226 18,351,540 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
G Gcfc2 GC-rich sequence DNA-binding factor 2 JBrowse link 4 112,662,556 112,700,505 RGD:1624291
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1600115
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1600115
G LOC102548514 crooked neck-like protein 1-like JBrowse link 3 140,125,232 140,141,730 RGD:1600115
RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:1624291
RGD:1600115
G Scaf11 SR-related CTD-associated factor 11 JBrowse link 7 137,804,019 137,856,337 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:13792537
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:13792537
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:13792537
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
RGD:13792537
G Srpk3 SRSF protein kinase 3 JBrowse link X 157,008,773 157,014,342 RGD:13792537
G Usp39 ubiquitin specific peptidase 39 JBrowse link 4 100,181,408 100,211,425 RGD:1624291
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 JBrowse link X 32,304,707 32,327,419 RGD:1624291
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042226.1 RGD:1600115
G AC096024.2 RGD:1600115
G Clns1a chloride nucleotide-sensitive channel 1A JBrowse link 1 162,676,246 162,696,549 RGD:1600115
RGD:1624291
G Coil coilin JBrowse link 10 76,320,676 76,336,169 RGD:13792537
G Ddx20 DEAD-box helicase 20 JBrowse link 2 208,144,142 208,154,764 RGD:1624291
RGD:13792537
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1624291
RGD:13792537
RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1624291
RGD:13792537
G Gemin5 gem (nuclear organelle) associated protein 5 JBrowse link 10 43,552,260 43,599,241 RGD:1624291
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1624291
RGD:13792537
G Gemin7 gem (nuclear organelle) associated protein 7 JBrowse link 1 80,473,966 80,487,976 RGD:1624291
RGD:13792537
G Gemin7l1 gem (nuclear organelle) associated protein 7-like 1 JBrowse link 4 78,954,274 78,955,038 RGD:13792537
G Gemin8 gem (nuclear organelle) associated protein 8 JBrowse link X 29,806,605 29,825,439 RGD:1624291
RGD:13792537
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:13792537
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:1624291
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:1624291
RGD:1600115
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1624291
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:1624291
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:1624291
RGD:13792537
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:1624291
RGD:13792537
G Snrpd2l small nuclear ribonucleoprotein D2-like JBrowse link 20 28,872,902 28,873,434 RGD:13792537
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:1624291
RGD:13792537
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1624291
G Snrpep2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 JBrowse link 1 141,503,818 141,504,126 RGD:1600115
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:1624291
G Strap serine/threonine kinase receptor associated protein JBrowse link 4 171,730,629 171,744,877 RGD:1624291
RGD:13792537
RGD:1600115
G Tdrd6 tudor domain containing 6 JBrowse link 9 19,917,613 19,932,888 RGD:1624291
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aar2 AAR2 splicing factor JBrowse link 3 152,626,738 152,648,365 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Prpf3 pre-mRNA processing factor 3 JBrowse link 2 197,947,010 197,971,464 RGD:1624291
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1624291
RGD:13792537
G Prpf8 pre-mRNA processing factor 8 JBrowse link 10 63,635,239 63,658,360 RGD:1624291
RGD:13792537
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Usp4 ubiquitin specific peptidase 4 JBrowse link 8 117,126,692 117,171,012 RGD:1624291
RGD:1600115
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 119,640,324 119,669,651 RGD:13792537
targeting of mRNA for destruction involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:1624291
RGD:1600115
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1624291
RGD:1600115
telomerase holoenzyme complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:1624291
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1624291
RGD:1600115
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:1624291
RGD:13792537
G Ptges3l1 prostaglandin E synthase 3-like 1 JBrowse link X 45,410,545 45,419,817 RGD:13792537
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
RGD:1600115
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 19578
    cellular process 18362
      cellular component organization or biogenesis 6481
        cellular component biogenesis 3143
          ribonucleoprotein complex biogenesis 486
            ribonucleoprotein complex assembly + 221
            ribosomal large subunit biogenesis + 123
            ribosomal small subunit biogenesis + 95
            ribosome biogenesis + 348
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.