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ONTOLOGY REPORT - ANNOTATIONS


Term:actin filament-based movement
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Accession:GO:0030048 term browser browse the term
Definition:Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.


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actin filament-based movement term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYH9 myosin heavy chain 9 JBrowse link 10 28,063,626 28,122,953 RGD:13508589
G MYO1B myosin IB JBrowse link 37 1,748,287 1,921,360 RGD:13508589
G MYO7A myosin VIIA JBrowse link 21 21,539,735 21,624,063 RGD:13508589
G MYO9B myosin IXB JBrowse link 20 45,512,286 45,582,619 RGD:13508589
G WAS WASP actin nucleation promoting factor JBrowse link X 41,882,240 41,890,053 RGD:13508589
G WASF2 WASP family member 2 JBrowse link 2 72,800,959 72,873,728 RGD:13508589
G WASL WASP like actin nucleation promoting factor JBrowse link 14 11,828,298 11,901,190 RGD:13508589
G WIPF1 WAS/WASL interacting protein family member 1 JBrowse link 36 18,574,298 18,653,255 RGD:13508589
G WIPF2 WAS/WASL interacting protein family member 2 JBrowse link 9 22,320,321 22,372,907 RGD:13508589
G WIPF3 WAS/WASL interacting protein family member 3 JBrowse link 14 42,634,342 42,717,974 RGD:13508589
actin-mediated cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EMP2 epithelial membrane protein 2 JBrowse link 6 32,026,908 32,060,447 RGD:13508589
G MYH2 myosin heavy chain 2 JBrowse link 5 34,810,791 34,838,177 RGD:13508589
G PARVA parvin alpha JBrowse link 21 35,382,447 35,536,791 RGD:13508589
G PDPN podoplanin JBrowse link 2 83,552,735 83,581,375 RGD:13508589
actin-myosin filament sliding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 30 2,514,825 2,519,398 RGD:13508589
apical constriction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FRMD6 FERM domain containing 6 JBrowse link 8 27,757,320 27,989,319 RGD:13508589
atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANK2 ankyrin 2 JBrowse link 32 32,484,196 33,143,295 RGD:13508589
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 82,844,188 82,845,641 RGD:13508589
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 18 46,554,390 46,830,533 RGD:13508589
G NUP155 nucleoporin 155 JBrowse link 4 71,340,109 71,409,286 RGD:13508589
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 5 10,783,235 10,808,342 RGD:13508589
cardiac muscle cell action potential involved in contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1D calcium voltage-gated channel subunit alpha1 D JBrowse link 20 36,189,986 36,488,460 RGD:13508589
G CACNA1G calcium voltage-gated channel subunit alpha1 G JBrowse link 9 26,481,148 26,544,511 RGD:13508589
G CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 JBrowse link 18 21,561,091 21,949,970 RGD:13508589
G KCNJ2 potassium inwardly rectifying channel subfamily J member 2 JBrowse link 9 16,468,938 16,475,722 RGD:13508589
G SCN1A sodium voltage-gated channel alpha subunit 1 JBrowse link 36 11,105,936 11,245,978 RGD:13508589
G SCN1B sodium voltage-gated channel beta subunit 1 JBrowse link 1 117,504,428 117,510,666 RGD:13508589
G SCN2B sodium voltage-gated channel beta subunit 2 JBrowse link 5 15,514,760 15,534,179 RGD:13508589
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 5 10,783,235 10,808,342 RGD:13508589
cytoplasmic actin-based contraction involved in cell motility term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VIL1 villin 1 JBrowse link 37 25,065,887 25,090,238 RGD:13508589
membrane depolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1C calcium voltage-gated channel subunit alpha1 C JBrowse link 27 44,007,363 44,748,251 RGD:13508589
G SCN5A sodium voltage-gated channel alpha subunit 5 JBrowse link 23 8,278,844 8,374,614 RGD:13508589
membrane repolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNJ5 potassium inwardly rectifying channel subfamily J member 5 JBrowse link 5 5,736,544 5,760,705 RGD:13508589
membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link 31 29,858,428 29,868,315 RGD:13508589
G KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 JBrowse link 31 29,777,154 29,777,839 RGD:13508589
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 21 23,860,727 23,872,194 RGD:13508589
G KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 JBrowse link 37 28,994,797 28,998,596 RGD:13508589
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 82,844,188 82,845,641 RGD:13508589
G KCNH2 potassium voltage-gated channel subfamily H member 2 JBrowse link 16 15,009,031 15,041,786 RGD:13508589
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 18 46,554,390 46,830,533 RGD:13508589
mitochondrion migration along actin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYO19 myosin XIX JBrowse link 9 36,383,777 36,429,730 RGD:13508589
muscle filament sliding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYH7 myosin heavy chain 7 JBrowse link 8 3,660,155 3,677,650 RGD:13508589
G MYH8 myosin heavy chain 8 JBrowse link 5 34,696,377 34,725,515 RGD:13508589
negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 21 23,860,727 23,872,194 RGD:13508589
nuclear migration along microfilament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SUN2 Sad1 and UNC84 domain containing 2 JBrowse link 10 26,055,508 26,074,972 RGD:13508589
positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RNF207 ring finger protein 207 JBrowse link 5 60,105,200 60,119,902 RGD:13508589
regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANK2 ankyrin 2 JBrowse link 32 32,484,196 33,143,295 RGD:13508589
G GJA5 gap junction protein alpha 5 JBrowse link 17 58,289,327 58,305,315 RGD:13508589
G RYR2 ryanodine receptor 2 JBrowse link 4 2,371,868 2,908,132 RGD:13508589
regulation of cardiac muscle cell action potential involved in regulation of contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAV3 caveolin 3 JBrowse link 20 9,384,901 9,398,055 RGD:13508589
G RANGRF RAN guanine nucleotide release factor JBrowse link 5 33,084,355 33,085,810 RGD:13508589
regulation of cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PDE4D phosphodiesterase 4D JBrowse link 2 45,843,767 47,245,263 RGD:13508589
G PLN phospholamban JBrowse link 1 58,579,095 58,590,541 RGD:13508589
G SCN5A sodium voltage-gated channel alpha subunit 5 JBrowse link 23 8,278,844 8,374,614 RGD:13508589
G STC1 stanniocalcin 1 JBrowse link 25 33,615,436 33,628,138 RGD:13508589
G SUMO1 small ubiquitin like modifier 1 JBrowse link 37 11,199,937 11,229,743 RGD:13508589
regulation of muscle filament sliding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYLK2 myosin light chain kinase 2 JBrowse link 24 21,284,309 21,297,889 RGD:13508589
regulation of muscle filament sliding speed term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TNNC1 troponin C1, slow skeletal and cardiac type JBrowse link 20 37,313,983 37,317,288 RGD:13508589
regulation of myofibroblast contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PDPN podoplanin JBrowse link 2 83,552,735 83,581,375 RGD:13508589
regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1C calcium voltage-gated channel subunit alpha1 C JBrowse link 27 44,007,363 44,748,251 RGD:13508589
G CAV1 caveolin 1 JBrowse link 14 55,458,934 55,494,563 RGD:13508589
G CTNNA3 catenin alpha 3 JBrowse link 4 17,364,121 19,035,836 RGD:13508589
G DSC2 desmocollin 2 JBrowse link 7 58,369,316 58,402,028 RGD:13508589
G DSP desmoplakin JBrowse link 35 7,479,628 7,524,732 RGD:13508589
G JUP junction plakoglobin JBrowse link 9 21,028,773 21,053,071 RGD:13508589
G RYR2 ryanodine receptor 2 JBrowse link 4 2,371,868 2,908,132 RGD:13508589
G TRPM4 transient receptor potential cation channel subfamily M member 4 JBrowse link 1 107,261,760 107,304,157 RGD:13508589
ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ANK2 ankyrin 2 JBrowse link 32 32,484,196 33,143,295 RGD:13508589
G GJA5 gap junction protein alpha 5 JBrowse link 17 58,289,327 58,305,315 RGD:13508589
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link 31 29,858,428 29,868,315 RGD:13508589
G KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 JBrowse link 31 29,777,154 29,777,839 RGD:13508589
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 21 23,860,727 23,872,194 RGD:13508589
G KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 JBrowse link 37 28,994,797 28,998,596 RGD:13508589
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 82,844,188 82,845,641 RGD:13508589
G RYR2 ryanodine receptor 2 JBrowse link 4 2,371,868 2,908,132 RGD:13508589
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 5 10,783,235 10,808,342 RGD:13508589
G SCN5A sodium voltage-gated channel alpha subunit 5 JBrowse link 23 8,278,844 8,374,614 RGD:13508589
G SNTA1 syntrophin alpha 1 JBrowse link 24 22,636,716 22,665,828 RGD:13508589
vesicle transport along actin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN4 actinin alpha 4 JBrowse link 1 114,354,993 114,427,997 RGD:13508589
G LGALS7B galectin 7B JBrowse link 1 114,309,641 114,311,861 RGD:13508589
G LOC100683071 unconventional myosin-Ig-like RGD:13508589
G MYO15A myosin XVA JBrowse link 5 41,369,484 41,421,303 RGD:13508589
G MYO19 myosin XIX JBrowse link 9 36,383,777 36,429,730 RGD:13508589
G MYO1A myosin IA JBrowse link 10 1,159,816 1,194,452 RGD:13508589
G MYO1B myosin IB JBrowse link 37 1,748,287 1,921,360 RGD:13508589
G MYO1C myosin IC JBrowse link 9 45,635,295 45,658,226 RGD:13508589
G MYO1D myosin ID JBrowse link 9 40,171,426 40,497,556 RGD:13508589
G MYO1E myosin IE JBrowse link 30 24,067,622 24,265,567 RGD:13508589
G MYO1F myosin IF JBrowse link 20 53,054,583 53,088,593 RGD:13508589
G MYO1H myosin IH JBrowse link 26 17,626,161 17,669,772 RGD:13508589
G MYO5A myosin VA JBrowse link 30 17,990,521 18,122,160 RGD:13508589
G MYO5B myosin VB JBrowse link 7 78,671,636 79,006,010 RGD:13508589
G MYO5C myosin VC JBrowse link 30 17,888,422 17,972,365 RGD:13508589
G MYO6 myosin VI JBrowse link 12 37,359,200 37,502,342 RGD:13508589
G MYO7A myosin VIIA JBrowse link 21 21,539,735 21,624,063 RGD:13508589
G MYO7B myosin VIIB JBrowse link 19 22,979,078 23,064,815 RGD:13508589

Term paths to the root
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Term Annotations click to browse term
  biological_process 14457
    cellular process 13633
      actin filament-based process 591
        actin filament-based movement 74
          actin-mediated cell contraction + 47
          mitochondrion migration along actin filament 1
          nuclear migration along microfilament 1
          positive regulation of actin filament-based movement + 1
          regulation of actin filament-based movement + 22
          vesicle transport along actin filament + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.