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ONTOLOGY REPORT - ANNOTATIONS


Term:actin filament-based movement
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Accession:GO:0030048 term browser browse the term
Definition:Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins.


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actin filament-based movement term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYH14 myosin heavy chain 14 JBrowse link 6 55,097,851 55,200,754 RGD:14298760
G MYO6 myosin VI JBrowse link 1 89,992,860 90,137,767 RGD:14298760
G MYO9B myosin IXB JBrowse link 2 60,455,605 60,567,479 RGD:14298760
G WAS WASP actin nucleation promoting factor JBrowse link X 42,774,597 42,793,055 RGD:14298760
G WASF2 WASP family member 2 JBrowse link 6 84,621,742 84,697,428 RGD:14298760
G WASL WASP like actin nucleation promoting factor JBrowse link 18 23,722,188 23,789,516 RGD:14298760
G WIPF1 WAS/WASL interacting protein family member 1 JBrowse link 15 80,521,032 80,646,462 RGD:14298760
G WIPF2 WAS/WASL interacting protein family member 2 JBrowse link 12 22,119,134 22,164,641 RGD:14298760
G WIPF3 WAS/WASL interacting protein family member 3 JBrowse link 18 42,991,495 43,025,177 RGD:14298760
actin-mediated cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EMP2 epithelial membrane protein 2 JBrowse link 3 32,449,496 32,493,245 RGD:14298760
G MYH1 myosin, heavy chain 1, skeletal muscle, adult JBrowse link 12 55,225,581 55,251,495 RGD:14298760
G MYH2 myosin, heavy chain 2, skeletal muscle, adult JBrowse link 12 55,252,974 55,278,820 RGD:14298760
G MYH4 myosin, heavy chain 4, skeletal muscle JBrowse link 12 55,190,545 55,216,294 RGD:14298760
G PDPN podoplanin JBrowse link 6 73,019,063 73,050,000 RGD:14298760
actin-myosin filament sliding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTC1 actin alpha cardiac muscle 1 JBrowse link 1 136,281,119 136,286,551 RGD:14298760
apical constriction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCDC88C coiled-coil domain containing 88C JBrowse link 7 112,917,436 113,030,442 RGD:14298760
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 JBrowse link 15 31,159,214 31,295,891 RGD:14298760
G FRMD6 FERM domain containing 6 JBrowse link 1 181,338,404 181,416,813 RGD:14298760
G ROCK1 Rho associated coiled-coil containing protein kinase 1 JBrowse link 6 106,163,899 106,314,998 RGD:14298760
atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 89,741,187 89,742,732 RGD:14298760
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 2 1,675,323 1,989,110 RGD:14298760
G NUP155 nucleoporin 155 JBrowse link 16 22,520,443 22,590,119 RGD:14298760
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 9 50,508,194 50,532,432 RGD:14298760
G ZNF202 zinc finger protein 202 JBrowse link 9 50,583,590 50,605,591 RGD:14298760
cardiac muscle cell action potential involved in contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNA1D calcium voltage-gated channel subunit alpha1 D JBrowse link 13 35,568,534 35,911,483 RGD:14298760
G CACNA1G calcium voltage-gated channel subunit alpha1 G JBrowse link 12 26,838,633 26,912,344 RGD:14298760
G CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 JBrowse link 9 97,781,057 98,265,925 RGD:14298760
G KCNJ2 potassium inwardly rectifying channel subfamily J member 2 JBrowse link 12 10,351,959 10,380,631 RGD:14298760
G SCN1A sodium voltage-gated channel alpha subunit 1 JBrowse link 15 72,529,866 72,696,715 RGD:14298760
G SCN1B sodium voltage-gated channel beta subunit 1 JBrowse link 6 44,597,461 44,607,488 RGD:14298760
G SCN2B sodium voltage-gated channel beta subunit 2 JBrowse link 9 45,484,994 45,502,578 RGD:14298760
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 9 50,508,194 50,532,432 RGD:14298760
G ZNF202 zinc finger protein 202 JBrowse link 9 50,583,590 50,605,591 RGD:14298760
cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SGCD sarcoglycan delta JBrowse link 16 66,447,982 67,481,709 RGD:14298760
cytoplasmic actin-based contraction involved in cell motility term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G VIL1 villin 1 JBrowse link 15 120,463,470 120,494,772 RGD:14298760
membrane depolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 JBrowse link 10 44,321,954 44,887,410 RGD:14298760
membrane repolarization during atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNJ5 potassium inwardly rectifying channel subfamily J member 5 JBrowse link 9 55,836,777 55,861,288 RGD:14298760
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 2 1,675,323 1,989,110 RGD:14298760
membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCND3 potassium voltage-gated channel subfamily D member 3 JBrowse link 4 108,394,687 108,621,514 RGD:14298760
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link 13 198,051,281 198,059,444 RGD:14298760
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 9 8,810,716 8,822,191 RGD:14298760
G KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 JBrowse link 15 124,910,708 124,915,787 RGD:14298760
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 89,741,187 89,742,732 RGD:14298760
G KCNH2 potassium voltage-gated channel subfamily H member 2 JBrowse link 18 6,242,826 6,279,154 RGD:14298760
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 JBrowse link 2 1,675,323 1,989,110 RGD:14298760
mitochondrion migration along actin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MYO19 myosin XIX JBrowse link 12 38,020,102 38,073,968 RGD:14298760
muscle filament sliding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC110255887 myosin-8 JBrowse link 12 55,135,651 55,166,983 RGD:14298760
G MYL6 myosin light chain 6 JBrowse link 5 21,559,226 21,562,418 RGD:14298760
negative regulation of membrane repolarization during ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 9 8,810,716 8,822,191 RGD:14298760
negative regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BIN1 bridging integrator 1 JBrowse link 15 25,328,679 25,379,675 RGD:14298760
nuclear migration along microfilament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SYNE2 spectrin repeat containing nuclear envelope protein 2 JBrowse link 1 193,909,563 194,352,550 RGD:14298760
positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RNF207 ring finger protein 207 JBrowse link 6 67,105,347 67,119,167 RGD:14298760
regulation of atrial cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GJA5 gap junction protein alpha 5 JBrowse link 4 99,854,129 99,871,288 RGD:14298760
regulation of cardiac muscle cell action potential involved in regulation of contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP9 A-kinase anchoring protein 9 JBrowse link 9 71,895,615 72,054,898 RGD:14298760
G CAV3 caveolin 3 JBrowse link 13 65,117,868 65,130,886 RGD:14298760
G FGF13 fibroblast growth factor 13 JBrowse link X 113,460,191 113,955,691 RGD:14298760
G HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 JBrowse link 7 60,010,396 60,052,258 RGD:14298760
G RANGRF RAN guanine nucleotide release factor JBrowse link 12 53,484,584 53,486,716 RGD:14298760
regulation of cardiac muscle cell contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PDE4D phosphodiesterase 4D JBrowse link 16 37,897,300 39,406,534 RGD:14298760
G SRI sorcin JBrowse link 9 68,492,235 68,515,247 RGD:14298760
G STC1 stanniocalcin 1 JBrowse link 14 7,952,175 7,961,365 RGD:14298760
regulation of muscle filament sliding speed term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TNNC1 troponin C1, slow skeletal and cardiac type JBrowse link 13 34,591,571 34,594,320 RGD:14298760
regulation of myofibroblast contraction term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PDPN podoplanin JBrowse link 6 73,019,063 73,050,000 RGD:14298760
regulation of ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CAV1 caveolin 1 JBrowse link 18 29,648,120 29,682,451 RGD:14298760
G CTNNA3 catenin alpha 3 JBrowse link 14 69,195,231 70,974,543 RGD:14298760
G DSC2 desmocollin 2 JBrowse link 6 114,982,259 115,021,332 RGD:14298760
G DSG2 desmoglein 2 JBrowse link 6 115,400,223 115,453,763 RGD:14298760
G DSP desmoplakin JBrowse link 7 4,862,649 4,915,626 RGD:14298760
G JUP junction plakoglobin JBrowse link 12 20,902,395 20,931,208 RGD:14298760
G PKP2 plakophilin 2 JBrowse link 5 41,424,687 41,509,590 RGD:14298760
G TRPM4 transient receptor potential cation channel subfamily M member 4 JBrowse link 6 54,342,774 54,377,557 RGD:14298760
regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DLG1 discs large MAGUK scaffold protein 1 JBrowse link 13 132,819,931 133,084,880 RGD:14298760
ventricular cardiac muscle cell action potential term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GJA5 gap junction protein alpha 5 JBrowse link 4 99,854,129 99,871,288 RGD:14298760
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 JBrowse link 13 198,051,281 198,059,444 RGD:14298760
G KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 JBrowse link 9 8,810,716 8,822,191 RGD:14298760
G KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 JBrowse link 15 124,910,708 124,915,787 RGD:14298760
G KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 JBrowse link X 89,741,187 89,742,732 RGD:14298760
G PKP2 plakophilin 2 JBrowse link 5 41,424,687 41,509,590 RGD:14298760
G SCN3B sodium voltage-gated channel beta subunit 3 JBrowse link 9 50,508,194 50,532,432 RGD:14298760
G ZNF202 zinc finger protein 202 JBrowse link 9 50,583,590 50,605,591 RGD:14298760
vesicle transport along actin filament term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTN4 actinin alpha 4 JBrowse link 6 47,493,834 47,565,999 RGD:14298760
G FNBP1L formin binding protein 1 like JBrowse link 4 123,675,062 123,779,645 RGD:14298760
G MYO16 myosin XVI JBrowse link 11 75,739,783 76,271,958 RGD:14298760
G MYO19 myosin XIX JBrowse link 12 38,020,102 38,073,968 RGD:14298760
G MYO1A myosin IA JBrowse link 5 22,338,024 22,363,528 RGD:14298760
G MYO1B myosin IB JBrowse link 15 95,874,398 96,066,408 RGD:14298760
G MYO1C myosin IC JBrowse link 12 47,691,252 47,715,670 RGD:14298760
G MYO1D myosin ID JBrowse link 12 42,120,373 42,489,191 RGD:14298760
G MYO1E myosin IE JBrowse link 1 112,677,545 112,902,005 RGD:14298760
G MYO1F myosin IF JBrowse link 2 70,753,143 70,792,938 RGD:14298760
G MYO1G myosin IG JBrowse link 18 50,466,450 50,483,520 RGD:14298760
G MYO1H myosin IH JBrowse link 14 41,469,191 41,588,934 RGD:14298760
G MYO3B myosin IIIB JBrowse link 15 76,432,429 76,855,443 RGD:14298760
G MYO5A myosin VA JBrowse link 1 119,165,751 119,398,591 RGD:14298760
G MYO5B myosin VB JBrowse link 1 99,418,242 99,810,934 RGD:14298760
G MYO5C myosin VC JBrowse link 1 119,407,298 119,536,443 RGD:14298760
G MYO6 myosin VI JBrowse link 1 89,992,860 90,137,767 RGD:14298760
G MYO7A myosin VIIA JBrowse link 9 11,251,187 11,337,618 RGD:14298760
G MYO9A myosin IXA JBrowse link 1 169,370,028 169,596,771 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15162
    cellular process 14331
      actin filament-based process 597
        actin filament-based movement 82
          actin-mediated cell contraction + 54
          mitochondrion migration along actin filament 1
          nuclear migration along microfilament 1
          positive regulation of actin filament-based movement + 1
          regulation of actin filament-based movement + 23
          vesicle transport along actin filament + 19
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.