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ONTOLOGY REPORT - ANNOTATIONS


Term:coated vesicle
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Accession:GO:0030135 term browser browse the term
Definition:Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins.
Synonyms:alt_id: GO:0005909
 xref: NIF_Subcellular:sao1985096626


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coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cubn cubilin JBrowse link 17 80,584,921 80,807,181 RGD:8554807
G Hspd1 heat shock protein family D (Hsp60) member 1 JBrowse link 9 61,680,529 61,691,202 RGD:1624291
G Idua alpha-L-iduronidase JBrowse link 14 2,041,828 2,056,762 RGD:1599427
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:5508789
G Slc28a2 solute carrier family 28 member 2 JBrowse link 3 114,355,003 114,647,382 RGD:30309913
AP-1 adaptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aftph aftiphilin JBrowse link 14 104,921,633 104,975,763 RGD:1624291
RGD:13792537
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 JBrowse link 15 33,759,108 33,767,017 RGD:13792537
G Clba1 clathrin binding box of aftiphilin containing 1 JBrowse link 6 137,386,694 137,393,490 RGD:13792537
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:2317430
RGD:13792537
AP-2 adaptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 JBrowse link 1 100,896,582 100,926,443 RGD:1624291
RGD:13792537
G Ap2a2 adaptor related protein complex 2 subunit alpha 2 JBrowse link 1 214,534,217 214,607,497 RGD:12793054
RGD:13792537
RGD:1624291
RGD:1600115
G Ap2b1 adaptor related protein complex 2 subunit beta 1 JBrowse link 10 70,516,462 70,621,973 RGD:1624291
G Ap2m1 adaptor related protein complex 2 subunit mu 1 JBrowse link 11 84,041,184 84,047,542 RGD:12793054
RGD:13792537
RGD:1624291
G Ap2s1 adaptor related protein complex 2 subunit sigma 1 JBrowse link 1 78,671,238 78,682,847 RGD:727584
RGD:2306270
RGD:1624291
G Btbd8 BTB domain containing 8 JBrowse link 14 3,282,422 3,351,740 RGD:13601995
RGD:1624291
RGD:1600115
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1624291
RGD:1600115
G Sgip1 SH3GL interacting endocytic adaptor 1 JBrowse link 5 122,300,415 122,498,478 RGD:1600115
RGD:8554282
RGD:1624291
G Slc18a3 solute carrier family 18 member A3 JBrowse link 16 8,682,668 8,685,529 RGD:2317430
RGD:13792537
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
clathrin coat of endocytic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epn2 epsin 2 JBrowse link 10 47,795,496 47,857,373 RGD:708327
RGD:1600115
clathrin coat of trans-Golgi network vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC105531.1 RGD:13792537
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:1600115
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:1600115
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:11535088
G Synrg synergin, gamma JBrowse link 10 71,278,698 71,357,791 RGD:631945
RGD:13792537
clathrin vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clint1 clathrin interactor 1 JBrowse link 10 30,833,914 31,007,813 RGD:13792537
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:70686
RGD:13792537
G Cltb clathrin, light chain B JBrowse link 17 10,537,348 10,554,999 RGD:70686
RGD:13792537
G Enthd1 ENTH domain containing 1 JBrowse link 7 121,668,857 121,784,530 RGD:13792537
G Epn1 Epsin 1 JBrowse link 1 72,294,153 72,310,217 RGD:13792537
G Epn2 epsin 2 JBrowse link 10 47,795,496 47,857,373 RGD:13792537
G Epn3 epsin 3 JBrowse link 10 82,220,762 82,231,200 RGD:13792537
G Necap1 NECAP endocytosis associated 1 JBrowse link 4 155,709,712 155,724,801 RGD:1624291
RGD:13792537
G Necap2 NECAP endocytosis associated 2 JBrowse link 5 159,589,856 159,602,260 RGD:1624291
RGD:13792537
RGD:1600115
clathrin-coated endocytic vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cemip cell migration inducing hyaluronidase JBrowse link 1 146,069,774 146,226,320 RGD:1624291
RGD:1600115
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:13792537
G Cpne2 copine 2 JBrowse link 19 10,860,963 10,898,970 RGD:1624291
G Cpne6 copine 6 JBrowse link 15 34,187,229 34,194,107 RGD:1624291
G Ctla4 cytotoxic T-lymphocyte-associated protein 4 JBrowse link 9 67,699,397 67,706,068 RGD:1624291
G Dnm2 dynamin 2 JBrowse link 8 22,458,869 22,540,649 RGD:728683
G Inpp5f inositol polyphosphate-5-phosphatase F JBrowse link 1 200,037,749 200,116,524 RGD:1624291
RGD:13792537
G Lmbrd1 LMBR1 domain containing 1 JBrowse link 9 30,939,555 31,038,381 RGD:1624291
G Myo1e myosin IE JBrowse link 8 76,644,715 76,840,240 RGD:1624291
RGD:1600115
G Myo6 myosin VI JBrowse link 8 87,583,649 87,731,271 RGD:1624291
G Ngfr nerve growth factor receptor JBrowse link 10 83,389,828 83,408,061 RGD:5508756
G Rab35 RAB35, member RAS oncogene family JBrowse link 12 46,704,274 46,718,404 RGD:1624291
G Slc5a7 solute carrier family 5 member 7 JBrowse link 9 5,294,377 5,330,822 RGD:9999386
clathrin-coated endocytic vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:1600115
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
clathrin-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb4 ATP binding cassette subfamily B member 4 JBrowse link 4 22,133,984 22,192,687 RGD:1600115
G Adam10 ADAM metallopeptidase domain 10 JBrowse link 8 77,107,355 77,237,483 RGD:1600115
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 19 41,805,252 41,860,076 RGD:1624291
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link 16 19,288,354 19,303,818 RGD:13792537
G Ap1m2 adaptor related protein complex 1 subunit mu 2 JBrowse link 8 22,318,941 22,336,827 RGD:13792537
G Ap2a1 adaptor related protein complex 2 subunit alpha 1 JBrowse link 1 100,896,582 100,926,443 RGD:708337
G Aqp2 aquaporin 2 JBrowse link 7 141,237,802 141,242,837 RGD:2313123
G Bcap31 B-cell receptor-associated protein 31 JBrowse link X 157,094,365 157,126,397 RGD:7483571
G Clint1 clathrin interactor 1 JBrowse link 10 30,833,914 31,007,813 RGD:1303953
G Clta clathrin, light chain A JBrowse link 5 59,490,689 59,509,139 RGD:2301372
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1624291
G Clvs1 clavesin 1 JBrowse link 5 22,380,318 22,580,391 RGD:1600115
RGD:13792537
RGD:8553526
G Clvs2 clavesin 2 JBrowse link 1 25,173,089 25,217,625 RGD:8553526
RGD:13792537
G Dab2 DAB adaptor protein 2 JBrowse link 2 55,747,353 55,768,848 RGD:1600115
G Dennd1a DENN domain containing 1A JBrowse link 3 22,061,120 22,501,502 RGD:1624291
RGD:13792537
G Dvl1 dishevelled segment polarity protein 1 JBrowse link 5 173,295,948 173,308,014 RGD:1624291
G Dvl2 dishevelled segment polarity protein 2 JBrowse link 10 56,609,810 56,619,269 RGD:1624291
G Epn3 epsin 3 JBrowse link 10 82,220,762 82,231,200 RGD:1624291
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:1624291
G Fcho1 FCH and mu domain containing endocytic adaptor 1 JBrowse link 16 20,136,008 20,153,344 RGD:1624291
RGD:13792537
G Fcho2 FCH and mu domain containing endocytic adaptor 2 JBrowse link 2 28,927,918 29,029,271 RGD:1624291
RGD:13792537
G Gga2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 JBrowse link 1 191,951,578 191,984,858 RGD:1624291
G Gpr107 G protein-coupled receptor 107 JBrowse link 3 10,632,876 10,694,654 RGD:1624291
RGD:13792537
G Hax1 HCLS1 associated protein X-1 JBrowse link 2 189,330,900 189,333,305 RGD:1302732
RGD:13792537
G Hip1 huntingtin interacting protein 1 JBrowse link 12 24,180,795 24,315,373 RGD:708337
RGD:13792537
RGD:1624291
G Hip1r huntingtin interacting protein 1 related JBrowse link 12 38,024,517 38,053,184 RGD:1624291
RGD:13792537
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:6902917
G Lrp1 LDL receptor related protein 1 JBrowse link 7 70,846,313 70,927,028 RGD:1581917
G Mall mal, T-cell differentiation protein-like JBrowse link 3 120,272,583 120,307,090 RGD:1624291
G Mlc1 modulator of VRAC current 1 JBrowse link 7 129,949,984 129,970,314 RGD:2326037
G Numb NUMB, endocytic adaptor protein JBrowse link 6 107,279,917 107,325,345 RGD:1600115
RGD:1624291
G Ocrl OCRL, inositol polyphosphate-5-phosphatase JBrowse link X 134,742,226 134,793,411 RGD:1600115
RGD:1624291
G Pheta1 PH domain containing endocytic trafficking adaptor 1 JBrowse link 12 40,225,316 40,230,573 RGD:1624291
G Pheta2 PH domain containing endocytic trafficking adaptor 2 JBrowse link 7 123,572,153 123,578,590 RGD:1624291
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1600754
RGD:13792537
RGD:8554167
RGD:1624291
RGD:1600115
RGD:8554206
G Plcg1 phospholipase C, gamma 1 JBrowse link 3 156,727,642 156,758,307 RGD:70605
G Rgs19 regulator of G-protein signaling 19 JBrowse link 3 177,196,276 177,204,767 RGD:737647
RGD:2303813
G Scamp1 secretory carrier membrane protein 1 JBrowse link 2 23,858,021 23,941,128 RGD:634537
G Sgip1 SH3GL interacting endocytic adaptor 1 JBrowse link 5 122,300,415 122,498,478 RGD:1624291
RGD:13792537
RGD:8554282
G Sh3bp4 SH3-domain binding protein 4 JBrowse link 9 96,210,750 96,288,903 RGD:1600115
G Slc2a4 solute carrier family 2 member 4 JBrowse link 10 56,552,921 56,558,562 RGD:1624291
G Snap91 synaptosome associated protein 91 JBrowse link 8 94,447,558 94,564,772 RGD:1600115
RGD:13792537
RGD:8554167
G Snx18 sorting nexin 18 JBrowse link 2 45,454,782 45,480,798 RGD:1624291
G Snx3 sorting nexin 3 JBrowse link 20 47,225,382 47,263,390 RGD:1624291
RGD:1600115
G Snx9 sorting nexin 9 JBrowse link 1 46,780,142 46,826,250 RGD:1624291
G Sort1 sortilin 1 JBrowse link 2 211,078,092 211,156,312 RGD:1624291
G Ston1 stonin 1 JBrowse link 6 12,332,465 12,379,783 RGD:13792537
G Ston2 stonin 2 JBrowse link 6 115,398,586 115,547,552 RGD:1624291
RGD:13792537
G Tnk2 tyrosine kinase, non-receptor, 2 JBrowse link 11 71,348,726 71,388,520 RGD:1624291
G Vamp2 vesicle-associated membrane protein 2 JBrowse link 10 55,675,171 55,679,405 RGD:1624291
RGD:1600115
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:1624291
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:1600115
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1624291
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1600115
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
G Vps41 VPS41 subunit of HOPS complex JBrowse link 17 48,643,754 48,810,633 RGD:1624291
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:634537
clathrin-coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy8 adenylate cyclase 8 JBrowse link 7 105,353,883 105,593,372 RGD:1600115
G Ap1b1 adaptor related protein complex 1 subunit beta 1 JBrowse link 14 85,230,652 85,281,806 RGD:1600115
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link 16 19,288,354 19,303,818 RGD:1600115
G Ap1m2 adaptor related protein complex 1 subunit mu 2 JBrowse link 8 22,318,941 22,336,827 RGD:1600115
G Cemip cell migration inducing hyaluronidase JBrowse link 1 146,069,774 146,226,320 RGD:1624291
RGD:1600115
G Dab2 DAB adaptor protein 2 JBrowse link 2 55,747,353 55,768,848 RGD:7243162
G Dbnl drebrin-like JBrowse link 14 86,029,335 86,044,364 RGD:1600115
G Dennd1a DENN domain containing 1A JBrowse link 3 22,061,120 22,501,502 RGD:1624291
G Reep6 receptor accessory protein 6 JBrowse link 7 12,240,059 12,246,814 RGD:1600115
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:1600115
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:4892574
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115
coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tepsin TEPSIN, adaptor related protein complex 4 accessory protein JBrowse link 10 109,271,161 109,278,745 RGD:11250428
RGD:1624291
COPI vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07071244.1 RGD:13792537
G Arcn1 archain 1 JBrowse link 8 49,051,257 49,075,861 RGD:13792537
G Copa COPI coat complex subunit alpha JBrowse link 13 90,467,285 90,508,894 RGD:1624291
RGD:13792537
G Copb1 COPI coat complex subunit beta 1 JBrowse link 1 183,695,480 183,729,569 RGD:632446
RGD:13792537
G Copb2 COPI coat complex subunit beta 2 JBrowse link 8 106,582,339 106,603,763 RGD:1624291
RGD:13792537
G Cope COPI coat complex subunit epsilon JBrowse link 16 20,863,141 20,873,516 RGD:13792537
G Copg1 COPI coat complex subunit gamma 1 JBrowse link 4 119,815,041 119,840,997 RGD:1600115
RGD:13792537
G Copg2 COPI coat complex subunit gamma 2 JBrowse link 4 58,064,394 58,195,242 RGD:1600115
RGD:13792537
RGD:1624291
G Copz1 COPI coat complex subunit zeta 1 JBrowse link 7 144,900,050 144,926,299 RGD:1624291
RGD:13792537
G Copz2 COPI coat complex subunit zeta 2 JBrowse link 10 84,718,824 84,731,880 RGD:1624291
RGD:13792537
G Dipk2a divergent protein kinase domain 2A JBrowse link 8 102,140,713 102,159,828 RGD:1624291
RGD:13792537
G Hmces 5-hydroxymethylcytosine binding, ES cell specific JBrowse link 4 119,841,088 119,864,115 RGD:1600115
G Scyl1 SCY1 like pseudokinase 1 JBrowse link 1 221,115,992 221,129,668 RGD:1624291
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:1599272
RGD:13792537
COPI-coated Golgi to ER transport vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccdc88a coiled coil domain containing 88A JBrowse link 14 113,771,093 113,936,376 RGD:10401274
G Gnas GNAS complex locus JBrowse link 3 172,374,957 172,434,988 RGD:10401274
COPI-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr1a actin related protein 1A JBrowse link 1 266,123,864 266,142,621 RGD:11541123
G Arcn1 archain 1 JBrowse link 8 49,051,257 49,075,861 RGD:1624291
RGD:13792537
G Arf1 ADP-ribosylation factor 1 JBrowse link 10 45,562,700 45,579,214 RGD:9684998
G Bnip1 BCL2 interacting protein 1 JBrowse link 10 16,677,077 16,689,321 RGD:11553268
G Ccdc115 coiled-coil domain containing 115 JBrowse link 9 37,774,876 37,778,839 RGD:1624291
G Copa COPI coat complex subunit alpha JBrowse link 13 90,467,285 90,508,894 RGD:1624291
G Copb1 COPI coat complex subunit beta 1 JBrowse link 1 183,695,480 183,729,569 RGD:1624291
G Cope COPI coat complex subunit epsilon JBrowse link 16 20,863,141 20,873,516 RGD:1624291
G Copg2 COPI coat complex subunit gamma 2 JBrowse link 4 58,064,394 58,195,242 RGD:1624291
G Dipk2a divergent protein kinase domain 2A JBrowse link 8 102,140,713 102,159,828 RGD:1624291
G Lman2 lectin, mannose-binding 2 JBrowse link 17 9,798,136 9,815,820 RGD:1624291
G Pacs1 phosphofurin acidic cluster sorting protein 1 JBrowse link 1 220,515,117 220,645,611 RGD:1624291
RGD:1600115
G Pacsin1 protein kinase C and casein kinase substrate in neurons 1 JBrowse link 20 7,241,248 7,286,702 RGD:1624291
RGD:1600115
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:11553268
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:2317280
RGD:13792537
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:2317280
RGD:1600115
G Use1 unconventional SNARE in the ER 1 JBrowse link 16 19,762,202 19,765,781 RGD:11553268
COPI-coated vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Golga5 golgin A5 JBrowse link 6 126,350,572 126,378,735 RGD:1599272
G Kdelr1 KDEL endoplasmic reticulum protein retention receptor 1 JBrowse link 1 101,859,346 101,870,232 RGD:1624291
G Kdelr2 KDEL endoplasmic reticulum protein retention receptor 2 JBrowse link 12 13,192,452 13,210,758 RGD:1600115
RGD:1624291
G Kdelr3 KDEL endoplasmic reticulum protein retention receptor 3 JBrowse link 7 120,749,680 120,760,163 RGD:1624291
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Tmem199 transmembrane protein 199 JBrowse link 10 65,775,721 65,780,293 RGD:1624291
RGD:1600115
COPII vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07041481.1 RGD:13792537
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1600115
RGD:1624291
G Pdcd6 programmed cell death 6 JBrowse link 1 31,576,183 31,591,852 RGD:1624291
RGD:1600115
G Pef1 penta-EF hand domain containing 1 JBrowse link 5 148,320,610 148,343,876 RGD:1624291
RGD:1600115
G Sar1a secretion associated, Ras related GTPase 1A JBrowse link 20 31,298,269 31,310,676 RGD:1624291
G Sar1b secretion associated, Ras related GTPase 1B JBrowse link 10 37,215,989 37,245,603 RGD:13792537
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link 4 145,686,186 145,699,577 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
RGD:13792537
G Sec23b Sec23 homolog B, COPII coat complex component JBrowse link 3 138,715,118 138,757,111 RGD:13792537
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link 10 37,138,539 37,215,899 RGD:1624291
RGD:13792537
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:1624291
RGD:13792537
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link 15 4,035,196 4,057,209 RGD:1624291
RGD:13792537
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link 2 227,455,704 227,562,801 RGD:1624291
RGD:13792537
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1600115
RGD:13792537
RGD:1624291
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:13792537
COPII-coated ER to Golgi transport vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
G Ddhd2 DDHD domain containing 2 JBrowse link 16 71,090,096 71,120,713 RGD:13792537
G Ecpas Ecm29 proteasome adaptor and scaffold JBrowse link 5 75,928,510 76,040,771 RGD:1624291
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 JBrowse link 10 16,821,393 16,912,050 RGD:13792537
G Ergic2 ERGIC and golgi 2 JBrowse link 4 182,569,086 182,600,258 RGD:13792537
G Ergic3 ERGIC and golgi 3 JBrowse link 3 151,553,567 151,563,318 RGD:13792537
G Golga2 golgin A2 JBrowse link 3 11,317,328 11,337,569 RGD:1624291
G Hdhd2 haloacid dehalogenase-like hydrolase domain containing 2 JBrowse link 18 73,226,630 73,278,062 RGD:13792537
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1624291
RGD:13792537
RGD:1600115
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1624291
RGD:1600115
RGD:13792537
G Lman1l lectin, mannose-binding, 1 like JBrowse link 8 62,386,806 62,400,370 RGD:13792537
G Lman2 lectin, mannose-binding 2 JBrowse link 17 9,798,136 9,815,820 RGD:13792537
G Lman2l lectin, mannose-binding 2-like JBrowse link 9 43,020,940 43,023,015 RGD:13792537
G Pcsk9 proprotein convertase subtilisin/kexin type 9 JBrowse link 5 126,031,368 126,053,726 RGD:1624291
G Pitpnm3 PITPNM family member 3 JBrowse link 10 58,618,679 58,722,679 RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
G Sec23ip SEC23 interacting protein JBrowse link 1 200,167,075 200,210,362 RGD:13792537
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link 2 230,286,886 230,356,887 RGD:8553730
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1624291
RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:8553719
G Tex261 testis expressed 261 JBrowse link 4 115,446,830 115,454,035 RGD:13792537
G Ticam2 toll-like receptor adaptor molecule 2 JBrowse link 18 40,555,106 40,572,569 RGD:13792537
G Tmed1 transmembrane p24 trafficking protein 1 JBrowse link 8 22,540,422 22,544,369 RGD:13792537
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:13792537
G Tmed11 transmembrane emp24 protein transport domain containing 11 JBrowse link 14 1,936,972 1,959,089 RGD:13792537
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:13792537
G Tmed3 transmembrane p24 trafficking protein 3 JBrowse link 8 97,075,194 97,083,107 RGD:13792537
G Tmed4 transmembrane p24 trafficking protein 4 JBrowse link 14 86,390,327 86,395,151 RGD:13792537
G Tmed5 transmembrane p24 trafficking protein 5 JBrowse link 14 2,613,318 2,624,773 RGD:13792537
G Tmed6 transmembrane p24 trafficking protein 6 JBrowse link 19 39,261,841 39,267,928 RGD:13792537
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:13792537
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:13792537
G Vangl2 VANGL planar cell polarity protein 2 JBrowse link 13 90,379,203 90,405,627 RGD:1624291
G Yif1a Yip1 interacting factor homolog A, membrane trafficking protein JBrowse link 1 220,470,070 220,474,131 RGD:13792537
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein JBrowse link 1 88,182,379 88,192,568 RGD:13792537
G Yipf5 Yip1 domain family, member 5 JBrowse link 18 33,401,103 33,436,885 RGD:1624291
G Yipf6 Yip1 domain family, member 6 JBrowse link X 68,625,760 68,637,780 RGD:1624291
ER to Golgi transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G LOC100912478 vacuolar ATPase assembly integral membrane protein VMA21-like JBrowse link 17 35,126,955 35,134,495 RGD:1600115
G LOC103689964 vacuolar ATPase assembly integral membrane protein Vma21 JBrowse link 17 34,940,424 34,946,009 RGD:1600115
G LOC103694079 vacuolar ATPase assembly integral membrane protein Vma21-like JBrowse link 17 35,121,571 35,126,402 RGD:1600115
G Scap SREBF chaperone JBrowse link 8 118,551,869 118,628,650 RGD:1600115
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:13792537
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link 13 75,153,074 75,216,941 RGD:13792537
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
RGD:13792537
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link 6 80,059,742 80,107,340 RGD:1624291
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:1600115
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link 7 123,381,082 123,438,605 RGD:1600115
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1600115
G Tmed7 transmembrane p24 trafficking protein 7 JBrowse link 18 40,579,182 40,586,260 RGD:1600115
G Uso1 USO1 vesicle transport factor JBrowse link 14 17,371,451 17,436,948 RGD:1600115
RGD:13792537
G Vma21 vacuolar ATPase assembly factor VMA21 JBrowse link 16 70,142,561 70,151,833 RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:13792537
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:13792537
trans-Golgi network transport vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07045071.1 RGD:13792537
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Clrn1 clarin 1 JBrowse link 2 149,049,925 149,088,787 RGD:1624291
RGD:1600115
G Furin furin (paired basic amino acid cleaving enzyme) JBrowse link 1 142,185,092 142,198,167 RGD:1624291
RGD:1600115
G Gopc golgi associated PDZ and coiled-coil motif containing JBrowse link 20 33,471,355 33,521,281 RGD:1624291
RGD:13792537
G Igf2r insulin-like growth factor 2 receptor JBrowse link 1 48,176,095 48,264,482 RGD:1624291
G Lyz2 lysozyme 2 JBrowse link 7 60,335,968 60,341,264 RGD:1599861
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:13792537
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:8554557
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:1624291
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
RGD:13792537
G Rab8b RAB8B, member RAS oncogene family JBrowse link 8 72,641,680 72,714,646 RGD:13792537
G Slc2a4 solute carrier family 2 member 4 JBrowse link 10 56,552,921 56,558,562 RGD:1624291
G Sort1 sortilin 1 JBrowse link 2 211,078,092 211,156,312 RGD:1624291
G Spg21 SPG21 abhydrolase domain containing, maspardin JBrowse link 8 70,994,531 71,022,302 RGD:1600115
RGD:1624291
G Steap2 STEAP2 metalloreductase JBrowse link 4 25,506,604 25,527,088 RGD:1624291
G Tgoln2 trans-golgi network protein 2 JBrowse link 4 100,475,415 100,483,229 RGD:13792537
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:1600115
trans-Golgi network transport vesicle membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nrgn neurogranin JBrowse link 8 40,015,049 40,023,193 RGD:9835422
G Rassf9 Ras association domain family member 9 JBrowse link 7 44,146,345 44,178,179 RGD:633607
RGD:13792537
RGD:1624291
RGD:1600115
vesicle coat term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:1624291
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:1624291
Weibel-Palade body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ece1 endothelin converting enzyme 1 JBrowse link 5 156,215,469 156,318,652 RGD:1624291
RGD:1600115
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:8662311
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:10047177
G Unc13d unc-13 homolog D JBrowse link 10 104,613,907 104,628,664 RGD:1600115
RGD:1624291
G Vwf von Willebrand factor JBrowse link 4 158,085,059 158,219,525 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20119
    intracellular 14089
      cytoplasm 10968
        cytoplasmic vesicle 1861
          coated vesicle 210
            COPI-coated vesicle + 34
            COPII-coated ER to Golgi transport vesicle + 62
            clathrin-coated vesicle + 117
            coated vesicle membrane + 93
Path 2
Term Annotations click to browse term
  cellular_component 20119
    cellular anatomical entity 19775
      organelle 12829
        membrane-bounded organelle 11125
          vesicle 2025
            intracellular vesicle 1867
              cytoplasmic vesicle 1861
                coated vesicle 210
                  COPI-coated vesicle + 34
                  COPII-coated ER to Golgi transport vesicle + 62
                  clathrin-coated vesicle + 117
                  coated vesicle membrane + 93
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.