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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix organization
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Accession:GO:0030198 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
Synonyms:exact_synonym: extracellular matrix organisation
 related_synonym: extracellular matrix organization and biogenesis
 xref: MIPS_funcat:42.27.01


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extracellular matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07069011.1 RGD:13792537
G Abi3bp ABI family member 3 binding protein JBrowse link 11 46,206,932 46,422,791 RGD:1624291
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 JBrowse link 7 135,465,021 135,630,941 RGD:1624291
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 JBrowse link 4 124,660,254 124,860,997 RGD:1624291
G Adamtsl2 ADAMTS-like 2 JBrowse link 3 5,624,473 5,654,890 RGD:1624291
G Adamtsl4 ADAMTS-like 4 JBrowse link 2 197,803,572 197,815,058 RGD:1624291
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:1624291
G Apbb1 amyloid beta precursor protein binding family B member 1 JBrowse link 1 170,387,625 170,411,263 RGD:1624291
G Apbb2 amyloid beta precursor protein binding family B member 2 JBrowse link 14 43,205,047 43,526,968 RGD:1624291
G Aplp1 amyloid beta precursor like protein 1 JBrowse link 1 88,897,525 88,908,750 RGD:1624291
G Aplp2 amyloid beta precursor like protein 2 JBrowse link 8 32,298,526 32,328,821 RGD:1624291
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
RGD:1600115
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Atxn1l ataxin 1-like JBrowse link 19 41,932,356 41,939,456 RGD:1624291
G B4galt1 beta-1,4-galactosyltransferase 1 JBrowse link 5 57,121,768 57,168,610 RGD:1600115
RGD:1624291
G Bcl3 BCL3, transcription coactivator JBrowse link 1 80,730,758 80,745,273 RGD:1624291
G Ccdc80 coiled-coil domain containing 80 JBrowse link 11 60,645,660 60,679,249 RGD:1624291
G Ccn1 cellular communication network factor 1 JBrowse link 2 251,529,354 251,532,312 RGD:1624291
RGD:1600115
G Col10a1 collagen type X alpha 1 chain JBrowse link 20 41,180,295 41,190,664 RGD:13792537
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:13792537
G Col11a2 collagen type XI alpha 2 chain JBrowse link 20 3,829,324 3,859,022 RGD:13792537
G Col13a1 collagen type XIII alpha 1 chain JBrowse link 20 31,456,502 31,598,360 RGD:13792537
G Col15a1 collagen type XV alpha 1 chain JBrowse link 5 62,840,360 62,950,240 RGD:13792537
G Col16a1 collagen type XVI alpha 1 chain JBrowse link 5 148,257,030 148,311,645 RGD:13792537
G Col17a1 collagen type XVII alpha 1 chain JBrowse link 1 267,416,681 267,465,049 RGD:13792537
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:1624291
RGD:13792537
G Col19a1 collagen type XIX alpha 1 chain JBrowse link 9 30,508,003 30,864,836 RGD:1624291
RGD:13792537
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:13792537
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:13792537
G Col22a1 collagen type XXII alpha 1 chain JBrowse link 7 113,014,896 113,251,165 RGD:13792537
G Col23a1 collagen type XXIII alpha 1 chain JBrowse link 10 34,846,618 34,934,991 RGD:13792537
G Col24a1 collagen type XXIV alpha 1 chain JBrowse link 2 251,200,686 251,436,254 RGD:13792537
G Col27a1 collagen type XXVII alpha 1 chain JBrowse link 5 79,054,004 79,172,442 RGD:1624291
RGD:13792537
G Col28a1 collagen type XXVIII alpha 1 chain JBrowse link 4 34,048,074 34,198,558 RGD:13792537
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:13792537
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:13792537
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:13792537
G Col4a2 collagen type IV alpha 2 chain JBrowse link 16 83,386,388 83,522,169 RGD:13792537
G Col4a3 collagen type IV alpha 3 chain JBrowse link 9 88,357,528 88,484,735 RGD:13792537
G Col4a4 collagen type IV alpha 4 chain JBrowse link 9 88,314,763 88,357,183 RGD:13792537
G Col4a5 collagen type IV alpha 5 chain JBrowse link X 112,769,595 112,983,720 RGD:13792537
G Col4a6 collagen type IV alpha 6 chain JBrowse link X 112,405,647 112,768,337 RGD:1624291
RGD:13792537
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:13792537
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:13792537
G Col5a3 collagen type V alpha 3 chain JBrowse link 8 21,786,324 21,831,751 RGD:13792537
G Col6a1 collagen type VI alpha 1 chain JBrowse link 20 12,657,913 12,676,370 RGD:13792537
G Col8a1 collagen type VIII alpha 1 chain JBrowse link 11 44,877,690 45,006,203 RGD:13792537
G Col8a2 collagen type VIII alpha 2 chain JBrowse link 5 144,308,527 144,335,142 RGD:13792537
G Col9a1 collagen type IX alpha 1 chain JBrowse link 9 30,419,001 30,502,307 RGD:13792537
G Col9a2 collagen type IX alpha 2 chain JBrowse link 5 139,962,684 139,979,865 RGD:13792537
G Col9a3 collagen type IX alpha 3 chain JBrowse link 3 176,102,287 176,124,839 RGD:13792537
G Colq collagen like tail subunit of asymmetric acetylcholinesterase JBrowse link 16 7,626,380 7,681,621 RGD:13792537
G Crispld2 cysteine-rich secretory protein LCCL domain containing 2 JBrowse link 19 52,647,038 52,705,118 RGD:1624291
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 16 22,704,318 23,075,071 RGD:1624291
G Dmp1 dentin matrix acidic phosphoprotein 1 JBrowse link 14 6,889,851 6,923,961 RGD:1624291
RGD:1600115
G Dnajb6 DnaJ heat shock protein family (Hsp40) member B6 JBrowse link 4 2,711,329 2,774,969 RGD:1624291
G Ecm2 extracellular matrix protein 2 JBrowse link 17 15,533,760 15,566,403 RGD:1624291
G Egfl6 EGF-like-domain, multiple 6 JBrowse link X 29,430,789 29,488,737 RGD:1624291
G Egflam EGF-like, fibronectin type III and laminin G domains JBrowse link 2 56,503,002 56,681,334 RGD:1624291
RGD:1600115
G Elf3 E74 like ETS transcription factor 3 JBrowse link 13 52,083,873 52,088,798 RGD:1624291
G Eln elastin JBrowse link 12 24,978,478 25,021,864 RGD:1624291
RGD:1600115
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G Ero1a endoplasmic reticulum oxidoreductase 1 alpha JBrowse link 15 19,619,947 19,655,381 RGD:1624291
G Ero1b endoplasmic reticulum oxidoreductase 1 beta JBrowse link 17 90,709,394 90,783,110 RGD:1624291
G Fbln1 fibulin 1 JBrowse link 7 126,096,793 126,176,468 RGD:1624291
RGD:13792537
G Fbln2 fibulin 2 JBrowse link 4 122,835,237 122,895,127 RGD:1600115
G Fbln5 fibulin 5 JBrowse link 6 125,644,797 125,723,957 RGD:1624291
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:1358623
G Foxf1 forkhead box F1 JBrowse link 19 53,012,306 53,016,100 RGD:1624291
G Foxf2 forkhead box F2 JBrowse link 17 34,150,417 34,156,450 RGD:1624291
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:1624291
G Gfod2 glucose-fructose oxidoreductase domain containing 2 JBrowse link 19 37,678,488 37,725,623 RGD:1624291
RGD:13792537
G Hpse2 heparanase 2 (inactive) JBrowse link 1 262,020,903 263,138,299 RGD:1624291
G Hsd17b12 hydroxysteroid (17-beta) dehydrogenase 12 JBrowse link 3 82,924,699 83,048,465 RGD:1624291
G Hspg2 heparan sulfate proteoglycan 2 JBrowse link 5 155,812,096 155,913,751 RGD:1624291
G Ibsp integrin-binding sialoprotein JBrowse link 14 6,801,200 6,813,987 RGD:1624291
RGD:1600115
G Idua alpha-L-iduronidase JBrowse link 14 2,041,828 2,056,762 RGD:1624291
G Itga8 integrin subunit alpha 8 JBrowse link 17 79,321,893 79,676,927 RGD:1624291
G Itih1 inter-alpha trypsin inhibitor, heavy chain 1 JBrowse link 16 7,012,376 7,026,542 RGD:1624291
G Kazald1 Kazal-type serine peptidase inhibitor domain 1 JBrowse link 1 264,827,739 264,831,152 RGD:1624291
G Lgals3 galectin 3 JBrowse link 15 24,153,602 24,165,537 RGD:1624291
G LOC100910978 extracellular matrix protein 2-like JBrowse link 17 14,695,293 14,719,087 RGD:13792537
G LOC100911572 collagen alpha-3(IV) chain-like JBrowse link 9 90,856,897 90,877,771 RGD:13792537
G LOC103693323 collagen alpha-1(XXIII) chain JBrowse link 10 36,741,139 37,031,200 RGD:13792537
G LOC103694864 matrix metalloproteinase-28-like RGD:13792537
G LOC103694874 stromelysin-3 RGD:13792537
G Mia MIA SH3 domain containing JBrowse link 1 83,991,577 83,993,270 RGD:1624291
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:13792537
G Mmp10 matrix metallopeptidase 10 JBrowse link 8 5,734,348 5,742,243 RGD:13792537
G Mmp11 matrix metallopeptidase 11 JBrowse link 20 13,670,051 13,678,834 RGD:1624291
RGD:13792537
G Mmp12 matrix metallopeptidase 12 JBrowse link 8 5,594,717 5,616,494 RGD:13792537
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:13792537
G Mmp14 matrix metallopeptidase 14 JBrowse link 15 33,074,441 33,083,666 RGD:13792537
G Mmp15 matrix metallopeptidase 15 JBrowse link 19 10,079,881 10,101,380 RGD:13792537
G Mmp16 matrix metallopeptidase 16 JBrowse link 5 31,568,344 31,818,368 RGD:13792537
G Mmp17 matrix metallopeptidase 17 JBrowse link 12
12
30,353,874
30,701,900
30,356,526
30,728,683
RGD:13792537
G Mmp19 matrix metallopeptidase 19 JBrowse link 7 3,216,392 3,224,202 RGD:13792537
G Mmp1b matrix metallopeptidase 1b (interstitial collagenase) JBrowse link 8 5,622,657 5,688,762 RGD:13792537
G Mmp2 matrix metallopeptidase 2 JBrowse link 19 15,542,771 15,570,589 RGD:13792537
G Mmp20 matrix metallopeptidase 20 JBrowse link 8 5,823,147 5,875,555 RGD:13792537
G Mmp21 matrix metallopeptidase 21 JBrowse link 1 205,745,119 205,750,786 RGD:13792537
G Mmp23 matrix metallopeptidase 23 JBrowse link 5 173,078,811 173,082,834 RGD:13792537
G Mmp24 matrix metallopeptidase 24 JBrowse link 3 151,307,309 151,355,401 RGD:13792537
G Mmp27 matrix metallopeptidase 27 JBrowse link 8 5,790,019 5,799,938 RGD:13792537
G Mmp28 matrix metallopeptidase 28 JBrowse link 10 70,660,691 70,681,672 RGD:13792537
G Mmp3 matrix metallopeptidase 3 JBrowse link 8 5,676,608 5,698,579 RGD:13792537
G Mmp7 matrix metallopeptidase 7 JBrowse link 8 5,893,253 5,900,965 RGD:13792537
G Mmp8 matrix metallopeptidase 8 JBrowse link 8 5,768,808 5,777,741 RGD:13792537
G Mmp9 matrix metallopeptidase 9 JBrowse link 3 161,413,410 161,421,473 RGD:1624291
RGD:13792537
RGD:1600115
G Mpzl3 myelin protein zero-like 3 JBrowse link 8 49,354,257 49,374,444 RGD:1624291
G Myf5 myogenic factor 5 JBrowse link 7 49,729,533 49,732,974 RGD:1624291
G Ndnf neuron-derived neurotrophic factor JBrowse link 4 96,528,830 96,565,780 RGD:1624291
G Nepn nephrocan JBrowse link 20 33,527,932 33,543,860 RGD:1600115
G Nf1 neurofibromin 1 JBrowse link 10 66,732,460 66,928,706 RGD:1624291
RGD:1600115
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:1624291
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
G Nox1 NADPH oxidase 1 JBrowse link X 104,909,328 104,932,508 RGD:1624291
RGD:1600115
G Nphp3 nephrocystin 3 JBrowse link 8 112,526,553 112,575,745 RGD:1624291
G Npnt nephronectin JBrowse link 2 238,001,767 238,068,886 RGD:1624291
RGD:1600115
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 JBrowse link 20 47,286,843 47,306,318 RGD:1624291
G Olfml2a olfactomedin-like 2A JBrowse link 3 23,223,468 23,259,318 RGD:1624291
G Olfml2b olfactomedin-like 2B JBrowse link 13 88,995,301 89,032,487 RGD:1624291
G Otol1 otolin 1 JBrowse link 2 166,845,543 166,866,513 RGD:13792537
G Pdgfra platelet derived growth factor receptor alpha JBrowse link 14 35,527,926 35,581,130 RGD:1624291
RGD:1600115
G Pomt1 protein-O-mannosyltransferase 1 JBrowse link 3 11,253,424 11,271,873 RGD:1624291
G Postn periostin JBrowse link 2 143,656,820 143,688,087 RGD:1624291
RGD:13792537
G Prdx4 peroxiredoxin 4 JBrowse link X 43,495,453 43,512,994 RGD:1624291
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:1624291
RGD:1600115
G Ptx3 pentraxin 3 JBrowse link 2 158,097,843 158,103,653 RGD:1624291
G Pxdn peroxidasin JBrowse link 6 48,866,496 48,982,368 RGD:1624291
G Reck reversion-inducing-cysteine-rich protein with kazal motifs JBrowse link 5 59,348,568 59,415,169 RGD:1624291
RGD:13792537
G RGD1562885 similar to RIKEN cDNA 2300002M23 JBrowse link 20 3,689,608 3,691,164 RGD:1624291
G Rxfp1 relaxin family peptide receptor 1 JBrowse link 2 178,402,411 178,520,213 RGD:1624291
RGD:1600115
G Scara3 scavenger receptor class A, member 3 JBrowse link 15 42,605,505 42,638,409 RGD:13792537
G Serac1 serine active site containing 1 JBrowse link 1 46,934,499 46,978,264 RGD:1624291
G Serpinb5 serpin family B member 5 JBrowse link 13 26,903,052 26,923,250 RGD:1624291
RGD:1600115
G Slc39a8 solute carrier family 39 member 8 JBrowse link 2 241,028,851 241,092,584 RGD:1624291
RGD:1600115
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:1624291
G Smoc1 SPARC related modular calcium binding 1 JBrowse link 6 104,718,403 104,879,611 RGD:1624291
G Smoc2 SPARC related modular calcium binding 2 JBrowse link 1 56,242,289 56,374,106 RGD:1624291
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
G Spint1 serine peptidase inhibitor, Kunitz type 1 JBrowse link 3 111,049,132 111,061,991 RGD:1624291
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 JBrowse link 20 29,654,926 29,679,927 RGD:1624291
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
G Tgfbi transforming growth factor, beta induced JBrowse link 17 8,400,123 8,429,338 RGD:1624291
RGD:13792537
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:1624291
G Tnfrsf11b TNF receptor superfamily member 11B JBrowse link 7 93,798,580 93,826,586 RGD:1624291
G Tnr tenascin R JBrowse link 13 77,602,249 77,678,385 RGD:1600115
RGD:1624291
G Tnxb tenascin XB RGD:1624291
G Vhl von Hippel-Lindau tumor suppressor JBrowse link 4 145,580,869 145,587,835 RGD:1624291
G Vit vitrin JBrowse link 6 1,091,817 1,208,888 RGD:1624291
RGD:13792537
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:1624291
G Vwa1 von Willebrand factor A domain containing 1 JBrowse link 5 173,216,737 173,221,923 RGD:1624291
G Wnt3a Wnt family member 3A JBrowse link 10 45,598,898 45,643,151 RGD:1624291
basement membrane assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamb1 laminin subunit beta 1 JBrowse link 6 50,528,796 50,596,593 RGD:13792537
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:13792537
G Lamb3 laminin subunit beta 3 JBrowse link 13 112,031,614 112,073,187 RGD:13792537
G Megf9 multiple EGF-like-domains 9 JBrowse link 5 86,586,996 86,696,388 RGD:13792537
G Ntn4 netrin 4 JBrowse link 7 34,533,543 34,649,330 RGD:13792537
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1624291
G Ramp2 receptor activity modifying protein 2 JBrowse link 10 89,166,170 89,168,962 RGD:1624291
RGD:1600115
basement membrane disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cma1 chymase 1 JBrowse link 15 34,601,037 34,603,819 RGD:1624291
G Ctss cathepsin S JBrowse link 2 197,655,780 197,679,768 RGD:1624291
RGD:1600115
G Hpn hepsin JBrowse link 1 89,534,112 89,549,575 RGD:1600115
RGD:1624291
basement membrane organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cav1 caveolin 1 JBrowse link 4 44,597,123 44,630,206 RGD:1600115
RGD:1624291
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1600115
RGD:1624291
G Col4a1 collagen type IV alpha 1 chain JBrowse link 16 83,522,162 83,632,153 RGD:1624291
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:1624291
G Fermt1 fermitin family member 1 JBrowse link 3 125,566,744 125,607,864 RGD:1624291
G Flrt2 fibronectin leucine rich transmembrane protein 2 JBrowse link 6 119,518,459 119,613,534 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G Gas2 growth arrest-specific 2 JBrowse link 1 107,234,389 107,363,624 RGD:1624291
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:1600115
RGD:1624291
G Mmp11 matrix metallopeptidase 11 JBrowse link 20 13,670,051 13,678,834 RGD:1624291
G Pmp22 peripheral myelin protein 22 JBrowse link 10 49,538,588 49,568,583 RGD:1624291
G Ric8a RIC8 guanine nucleotide exchange factor A JBrowse link 1 213,606,599 213,612,905 RGD:1624291
RGD:1600115
G Spint2 serine peptidase inhibitor, Kunitz type, 2 JBrowse link 1 87,199,373 87,221,826 RGD:1624291
G Tfap2a transcription factor AP-2 alpha JBrowse link 17 24,653,342 24,670,457 RGD:1624291
collagen fibril organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link 1 140,762,758 140,824,441 RGD:1624291
RGD:1600115
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 JBrowse link 20 30,812,319 30,888,936 RGD:1624291
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 JBrowse link 10 36,098,051 36,304,416 RGD:1624291
G Anxa2 annexin A2 JBrowse link 8 75,687,134 75,723,589 RGD:1624291
RGD:13792537
G Anxa9 annexin A9 JBrowse link 2 196,470,318 196,481,568 RGD:13792537
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Col11a1 collagen type XI alpha 1 chain JBrowse link 2 216,863,423 217,056,523 RGD:1300046
RGD:1624291
G Col11a2 collagen type XI alpha 2 chain JBrowse link 20 3,829,324 3,859,022 RGD:1624291
RGD:13792537
G Col14a1 collagen type XIV alpha 1 chain JBrowse link 7 95,054,877 95,274,073 RGD:1624291
G Col1a1 collagen type I alpha 1 chain JBrowse link 10 82,745,801 82,762,790 RGD:1624291
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
G Col24a1 collagen type XXIV alpha 1 chain JBrowse link 2 251,200,686 251,436,254 RGD:13792537
G Col2a1 collagen type II alpha 1 chain JBrowse link 7 139,454,945 139,484,403 RGD:1624291
RGD:13792537
RGD:1600115
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
G Col5a1 collagen type V alpha 1 chain JBrowse link 3 6,430,180 6,581,010 RGD:1600115
RGD:13792537
RGD:1624291
G Col5a2 collagen type V alpha 2 chain JBrowse link 9 52,091,088 52,238,735 RGD:1624291
G Comp cartilage oligomeric matrix protein JBrowse link 16 20,798,437 20,807,070 RGD:1624291
RGD:1600115
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 JBrowse link 6 2,308,179 2,316,739 RGD:1600115
RGD:1624291
G Ddr2 discoidin domain receptor tyrosine kinase 2 JBrowse link 13 88,311,639 88,436,561 RGD:1624291
G Dpt dermatopontin JBrowse link 13 83,073,307 83,102,404 RGD:1624291
RGD:13792537
G Fmod fibromodulin JBrowse link 13 50,874,886 50,885,503 RGD:1600115
G Foxc1 forkhead box C1 JBrowse link 17 33,947,501 33,951,484 RGD:1624291
G Foxc2 forkhead box C2 JBrowse link 19 53,044,379 53,047,081 RGD:1624291
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 3 105,203,309 105,214,989 RGD:1624291
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 3 12,608,748 12,686,937 RGD:1624291
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1600668
RGD:1624291
RGD:1600669
G Loxl2 lysyl oxidase-like 2 JBrowse link 15 51,276,022 51,365,238 RGD:1600115
RGD:13792537
RGD:1624291
G Loxl3 lysyl oxidase-like 3 JBrowse link 4 113,866,782 113,883,713 RGD:13792537
G Loxl4 lysyl oxidase-like 4 JBrowse link 1 261,833,365 261,853,599 RGD:13792537
G Lum lumican JBrowse link 7 38,820,058 38,826,862 RGD:1600115
G Mia3 MIA SH3 domain ER export factor 3 JBrowse link 13 101,727,434 101,770,127 RGD:1624291
G Mkx mohawk homeobox JBrowse link 17 60,537,615 60,553,284 RGD:1624291
G Mmp11 matrix metallopeptidase 11 JBrowse link 20 13,670,051 13,678,834 RGD:1624291
G Nf1 neurofibromin 1 JBrowse link 10 66,732,460 66,928,706 RGD:1624291
RGD:1600115
G P3h1 prolyl 3-hydroxylase 1 JBrowse link 5 138,279,597 138,294,280 RGD:1624291
G P3h4 prolyl 3-hydroxylase family member 4 (non-enzymatic) JBrowse link 10 88,318,231 88,325,326 RGD:1624291
RGD:1600115
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 JBrowse link 20 28,920,616 28,972,576 RGD:1624291
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1624291
G Pxdn peroxidasin JBrowse link 6 48,866,496 48,982,368 RGD:1624291
G Scx scleraxis bHLH transcription factor JBrowse link 7 117,519,075 117,521,093 RGD:1624291
G Serpinf2 serpin family F member 2 JBrowse link 10 62,264,247 62,272,353 RGD:1624291
G Serpinh1 serpin family H member 1 JBrowse link 1 164,301,010 164,308,306 RGD:1600115
RGD:13792537
RGD:1624291
G Sfrp2 secreted frizzled-related protein 2 JBrowse link 2 182,723,732 182,731,277 RGD:1624291
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
RGD:1600115
G Tgfbr1 transforming growth factor, beta receptor 1 JBrowse link 5 63,056,071 63,119,635 RGD:1624291
G Tnxb tenascin XB RGD:1624291
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:1624291
RGD:1600115
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
elastic fiber assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Efemp2 EGF containing fibulin extracellular matrix protein 2 JBrowse link 1 220,853,695 220,861,420 RGD:1624291
G Eln elastin JBrowse link 12 24,978,478 25,021,864 RGD:731206
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
G Fbln5 fibulin 5 JBrowse link 6 125,644,797 125,723,957 RGD:1624291
RGD:13792537
RGD:1600115
G Lox lysyl oxidase JBrowse link 18 47,500,320 47,577,819 RGD:1600669
RGD:1624291
G Mfap4 microfibril associated protein 4 JBrowse link 10 47,765,463 47,768,484 RGD:1624291
G Myh11 myosin heavy chain 11 JBrowse link 10 764,421 859,184 RGD:1600115
RGD:1624291
G Thsd4 thrombospondin type 1 domain containing 4 JBrowse link 8 64,811,940 65,413,498 RGD:1624291
G Tnxb tenascin XB RGD:1624291
extracellular matrix assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col1a2 collagen type I alpha 2 chain JBrowse link 4 31,534,225 31,569,152 RGD:1624291
G Gas6 growth arrest specific 6 JBrowse link 16 81,213,364 81,243,824 RGD:8554638
G Gpm6b glycoprotein m6b JBrowse link X 29,604,607 29,751,174 RGD:1600115
RGD:1624291
G Hapln2 hyaluronan and proteoglycan link protein 2 JBrowse link 2 187,395,104 187,402,076 RGD:1624291
RGD:1600115
G Has1 hyaluronan synthase 1 JBrowse link 1 59,720,612 59,732,409 RGD:1624291
RGD:13792537
G Has2 hyaluronan synthase 2 JBrowse link 7 96,438,046 96,464,049 RGD:1624291
RGD:13792537
RGD:1600115
G Has3 hyaluronan synthase 3 JBrowse link 19 39,063,298 39,077,745 RGD:1624291
RGD:13792537
G Qsox1 quiescin sulfhydryl oxidase 1 JBrowse link 13 73,423,396 73,460,890 RGD:1624291
G Smpd3 sphingomyelin phosphodiesterase 3 JBrowse link 19 38,237,963 38,321,572 RGD:1624291
RGD:1600115
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:1624291
RGD:1600115
extracellular matrix constituent secretion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccn2 cellular communication network factor 2 JBrowse link 1 21,851,657 21,854,773 RGD:2314619
G Creb3l1 cAMP responsive element binding protein 3-like 1 JBrowse link 3 80,892,433 80,933,283 RGD:1624291
RGD:1600115
G Eng endoglin JBrowse link 3 11,679,530 11,717,486 RGD:1601032
G Tmem38b transmembrane protein 38B JBrowse link 5 70,639,156 70,675,055 RGD:1624291
extracellular matrix disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Capg capping actin protein, gelsolin like JBrowse link 4 100,395,693 100,419,447 RGD:1624291
G Cma1 chymase 1 JBrowse link 15 34,601,037 34,603,819 RGD:1624291
G Eng endoglin JBrowse link 3 11,679,530 11,717,486 RGD:1624291
G Exoc8 exocyst complex component 8 JBrowse link 19 57,647,305 57,649,794 RGD:1624291
G Flot1 flotillin 1 JBrowse link 20 3,427,890 3,438,418 RGD:1624291
G Gsn gelsolin JBrowse link 3 14,456,106 14,508,922 RGD:1624291
G Kif9 kinesin family member 9 JBrowse link 8 118,737,739 118,795,190 RGD:1624291
G Klk4 kallikrein-related peptidase 4 JBrowse link 1 99,828,944 99,834,642 RGD:1624291
RGD:13792537
G Klk5 kallikrein related-peptidase 5 JBrowse link 1 99,781,291 99,793,745 RGD:13792537
G Lamc1 laminin subunit gamma 1 JBrowse link 13 70,656,727 70,783,515 RGD:1624291
G Lcp1 lymphocyte cytosolic protein 1 JBrowse link 15 57,170,566 57,277,811 RGD:1624291
G Mmp13 matrix metallopeptidase 13 JBrowse link 8 5,522,739 5,533,018 RGD:1600115
RGD:1624291
G Mmp20 matrix metallopeptidase 20 JBrowse link 8 5,823,147 5,875,555 RGD:1624291
G Noxo1 NADPH oxidase organizer 1 JBrowse link 10 14,062,331 14,066,918 RGD:1624291
G Plg plasminogen JBrowse link 1 48,521,828 48,563,895 RGD:1624291
G Sh3pxd2b SH3 and PX domains 2B JBrowse link 10 17,209,152 17,296,449 RGD:1624291
G Tpsab1 tryptase alpha/beta 1 JBrowse link 10 14,701,253 14,703,668 RGD:1624291
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1624291
G Wdr72 WD repeat domain 72 JBrowse link 8 80,965,734 81,125,710 RGD:1624291
gene expression involved in extracellular matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dspp dentin sialophosphoprotein JBrowse link 14 6,926,972 6,933,079 RGD:1624291
glomerular basement membrane development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Col4a3 collagen type IV alpha 3 chain JBrowse link 9 88,357,528 88,484,735 RGD:1624291
G Col4a4 collagen type IV alpha 4 chain JBrowse link 9 88,314,763 88,357,183 RGD:1624291
RGD:13792537
G Mpv17 mitochondrial inner membrane protein MPV17 JBrowse link 6 26,585,713 26,600,265 RGD:1624291
G Myo1e myosin IE JBrowse link 8 76,644,715 76,840,240 RGD:1624291
RGD:1600115
G Nid1 nidogen 1 JBrowse link 17 90,553,161 90,627,133 RGD:1624291
RGD:1600115
G Nphs1 NPHS1 adhesion molecule, nephrin JBrowse link 1 88,922,346 88,950,560 RGD:1600115
RGD:1624291
G Sulf1 sulfatase 1 JBrowse link 5 5,999,520 6,186,901 RGD:1600115
RGD:13792537
RGD:1624291
G Sulf2 sulfatase 2 JBrowse link 3 162,791,349 162,872,984 RGD:1624291
RGD:13792537
G Wt1 WT1 transcription factor JBrowse link 3 95,133,221 95,180,574 RGD:1624291
RGD:1600115
metanephric glomerular basement membrane development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lamb2 laminin subunit beta 2 JBrowse link 8 117,268,335 117,280,517 RGD:1600115
RGD:1624291
negative regulation of collagen fibril organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chadl chondroadherin-like JBrowse link 7 122,915,847 122,929,127 RGD:1624291
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
negative regulation of extracellular matrix assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Antxr1 ANTXR cell adhesion molecule 1 JBrowse link 4 118,946,267 119,131,202 RGD:1624291
RGD:1600115
negative regulation of extracellular matrix constituent secretion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adtrp androgen-dependent TFPI-regulating protein JBrowse link 17 22,619,913 22,688,296 RGD:1600115
RGD:1624291
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:1624291
RGD:1600115
G Tnfrsf1b TNF receptor superfamily member 1B JBrowse link 5 163,136,390 163,167,299 RGD:1624291
negative regulation of extracellular matrix disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cst3 cystatin C JBrowse link 3 143,219,671 143,223,544 RGD:1624291
G Dpp4 dipeptidylpeptidase 4 JBrowse link 3 48,291,055 48,372,672 RGD:1624291
RGD:1600115
G Fap fibroblast activation protein, alpha JBrowse link 3 48,467,781 48,536,242 RGD:1624291
negative regulation of extracellular matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fap fibroblast activation protein, alpha JBrowse link 3 48,467,781 48,536,242 RGD:1624291
positive regulation of basement membrane assembly involved in embryonic body morphogenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link 13 34,365,038 34,584,651 RGD:1624291
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link 8 122,003,719 122,185,495 RGD:1624291
G Dag1 dystroglycan 1 JBrowse link 8 116,980,501 116,993,182 RGD:1624291
G Phldb1 pleckstrin homology-like domain, family B, member 1 JBrowse link 8 48,997,189 49,045,176 RGD:1600115
RGD:1624291
G Phldb2 pleckstrin homology-like domain, family B, member 2 JBrowse link 11 60,042,879 60,051,229 RGD:1624291
RGD:1600115
positive regulation of collagen fibril organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 JBrowse link 16 20,039,969 20,052,277 RGD:1624291
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:1600115
RGD:1624291
positive regulation of extracellular matrix assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emilin1 elastin microfibril interfacer 1 JBrowse link 6 26,821,249 26,829,013 RGD:1624291
G Rgcc regulator of cell cycle JBrowse link 15 61,551,861 61,564,695 RGD:1624291
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:1624291
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
positive regulation of extracellular matrix constituent secretion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:5129171
G Cpb2 carboxypeptidase B2 JBrowse link 15 57,290,849 57,339,762 RGD:7243115
G Rgcc regulator of cell cycle JBrowse link 15 61,551,861 61,564,695 RGD:1624291
positive regulation of extracellular matrix disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Carmil2 capping protein regulator and myosin 1 linker 2 JBrowse link 19 37,652,383 37,665,333 RGD:1624291
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link 13 34,365,038 34,584,651 RGD:1624291
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link 8 122,003,719 122,185,495 RGD:1624291
G Ddr2 discoidin domain receptor tyrosine kinase 2 JBrowse link 13 88,311,639 88,436,561 RGD:1624291
G Fscn1 fascin actin-bundling protein 1 JBrowse link 12 13,655,459 13,668,595 RGD:1624291
RGD:1600115
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:1624291
G Meltf melanotransferrin JBrowse link 11 72,135,311 72,158,106 RGD:1624291
G Pdpn podoplanin JBrowse link 5 161,947,137 161,981,441 RGD:1624291
RGD:1600115
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
positive regulation of extracellular matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 3 10,041,820 10,145,076 RGD:8693597
G Cflar CASP8 and FADD-like apoptosis regulator JBrowse link 9 65,534,608 65,586,395 RGD:11341715
G Rb1 RB transcriptional corepressor 1 JBrowse link 15 55,081,582 55,209,060 RGD:1624291
regulation of collagen fibril organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aebp1 AE binding protein 1 JBrowse link 14 86,101,253 86,111,323 RGD:1600115
RGD:1624291
regulation of extracellular matrix assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agt angiotensinogen JBrowse link 19 57,321,594 57,333,460 RGD:1624291
G Has2 hyaluronan synthase 2 JBrowse link 7 96,438,046 96,464,049 RGD:12910548
G Notch1 notch receptor 1 JBrowse link 3 3,905,562 3,951,015 RGD:1624291
regulation of extracellular matrix disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddr1 discoidin domain receptor tyrosine kinase 1 JBrowse link 20 3,553,430 3,574,959 RGD:1600115
RGD:1624291
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:2313717
G Fgfr4 fibroblast growth factor receptor 4 JBrowse link 17 9,990,072 10,004,339 RGD:1624291
RGD:1600115
regulation of extracellular matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 3 10,041,820 10,145,076 RGD:1624291
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase JBrowse link 13 74,154,533 74,333,244 RGD:1624291
G Angptl7 angiopoietin like 7 JBrowse link 5 165,311,794 165,318,361 RGD:1624291
RGD:1600115
G Itgb3 integrin subunit beta 3 JBrowse link 10 92,667,869 92,783,413 RGD:1624291
G Lemd3 LEM domain containing 3 JBrowse link 7 62,976,671 63,045,860 RGD:1624291
G Tcf15 transcription factor 15 JBrowse link 3 147,643,250 147,649,511 RGD:1624291
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:1624291
vitelline membrane formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ihh Indian hedgehog signaling molecule JBrowse link 9 82,208,223 82,214,440 RGD:1624291

Term paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.