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ONTOLOGY REPORT - ANNOTATIONS


Term:collagen fibril organization
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Accession:GO:0030199 term browser browse the term
Definition:Any process that determines the size and arrangement of collagen fibrils within an extracellular matrix.
Synonyms:exact_synonym: collagen fibril organisation;   fibrillar collagen organization


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collagen fibril organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan ISO
IEA
MGI:MGI:1856465 (MGI:MGI:2664273|PMID:3070812)
GO_REF:0000107
RGD
Ensembl
PMID:3070812 GO_REF:0000107, MGI:MGI:2664273 NCBI chr 1:140,762,758...140,824,441
Ensembl chr 1:140,762,758...140,824,441
JBrowse link
G Adamts14 ADAM metallopeptidase with thrombospondin type 1 motif, 14 ISO (MGI:MGI:2158963|PMID:11741898) RGD PMID:11741898 MGI:MGI:2158963 NCBI chr20:30,812,319...30,888,936
Ensembl chr20:30,812,353...30,888,751
JBrowse link
G Adamts2 ADAM metallopeptidase with thrombospondin type 1 motif, 2 ISO MGI:MGI:2388161 (MGI:MGI:3621082|PMID:16556917) RGD PMID:16556917 MGI:MGI:3621082 NCBI chr10:36,098,051...36,304,416
Ensembl chr10:36,098,051...36,304,409
JBrowse link
G Anxa2 annexin A2 ISO MGI:MGI:3028929 (MGI:MGI:3027337|PMID:14702107) RGD PMID:14702107 MGI:MGI:3027337 NCBI chr 8:75,687,134...75,723,589
Ensembl chr 8:75,687,100...75,723,594
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856097|MGI:MGI:1856101|MGI:MGI:1856102|MGI:MGI:3588774 (MGI:MGI:3616522|PMID:16338116), (MGI:MGI:53875|PMID:4808708), (MGI:MGI:54357|PMID:20889), (MGI:MGI:83737|PMID:8096378), (MGI:MGI:83811|PMID:8895222) RGD PMID:20889, PMID:4808708, PMID:8096378, PMID:8895222, PMID:16338116 MGI:MGI:3616522, MGI:MGI:53875, MGI:MGI:54357, MGI:MGI:83737, MGI:MGI:83811 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Col11a1 collagen type XI alpha 1 chain TAS
ISO
MGI:MGI:1856399|MGI:MGI:88457 (MGI:MGI:2664273|PMID:3070812), (MGI:MGI:3694610|PMID:17029294), (MGI:MGI:3766851|PMID:17683922), (MGI:MGI:5014156|PMID:21467034), (MGI:MGI:53676|PMID:4100752), (MGI:MGI:53732|PMID:4110409), (MGI:MGI:70833|PMID:7859283) RGD PMID:3070812, PMID:4100752, PMID:4110409, PMID:7859283, PMID:17029294, PMID:17683922, PMID:21467034, PMID:12962540 MGI:MGI:2664273, MGI:MGI:3694610, MGI:MGI:3766851, MGI:MGI:5014156, MGI:MGI:53676, MGI:MGI:53732, MGI:MGI:70833, RGD:1300046 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col11a2 collagen type XI alpha 2 chain ISO
IBA
(PMID:9188673)
PMID:21873635
MGI:MGI:2154689 (MGI:MGI:1350441|PMID:10581026), (MGI:MGI:2151300|PMID:11668593)
RGD PMID:9188673, PMID:10581026, PMID:11668593, PMID:21873635 MGI:MGI:1350441, MGI:MGI:2151300, RGD:13792537 NCBI chr20:3,829,324...3,859,022
Ensembl chr20:3,830,164...3,859,018
JBrowse link
G Col13a1 collagen type XIII alpha 1 chain IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:31,456,502...31,598,360
Ensembl chr20:31,456,852...31,598,118
JBrowse link
G Col14a1 collagen type XIV alpha 1 chain ISO MGI:MGI:3846440 (MGI:MGI:5444801|PMID:22906538) RGD PMID:22906538 MGI:MGI:5444801 NCBI chr 7:95,054,877...95,274,073
Ensembl chr 7:95,074,236...95,273,298
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:14976317), (PMID:15095409), (PMID:17211858), (PMID:18375391) RGD PMID:14976317, PMID:15095409, PMID:17211858, PMID:18375391 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO (PMID:17211858), (PMID:18375391) RGD PMID:17211858, PMID:18375391 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO
IBA
IEA
(PMID:1429602)
PMID:21873635
MGI:MGI:1857275|MGI:MGI:2152978 (MGI:MGI:1315157|PMID:9832566), (MGI:MGI:1327515|PMID:9915573), (MGI:MGI:2664273|PMID:3070812), (MGI:MGI:3618042|PMID:11171689), (MGI:MGI:55057|PMID:7276808), (MGI:MGI:77563|PMID:7590256), (MGI:MGI:84914|PMID:8989518), (MGI:MGI:85592|PMID:9022054)
GO_REF:0000107
RGD
Ensembl
PMID:1429602, PMID:3070812, PMID:7276808, PMID:7590256, PMID:8989518, PMID:9022054, PMID:9832566, PMID:9915573, PMID:11171689, PMID:21873635 GO_REF:0000107, MGI:MGI:1315157, MGI:MGI:1327515, MGI:MGI:2664273, MGI:MGI:3618042, MGI:MGI:55057, MGI:MGI:77563, MGI:MGI:84914, MGI:MGI:85592, RGD:13792537 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Col3a1 collagen type III alpha 1 chain ISO MGI:MGI:1857431 (MGI:MGI:86656|PMID:9050868)
(PMID:7546986), (PMID:9036918)
RGD PMID:7546986, PMID:9036918, PMID:9050868 MGI:MGI:86656 NCBI chr 9:52,023,295...52,059,221
Ensembl chr 9:52,023,295...52,059,217
JBrowse link
G Col5a1 collagen type V alpha 1 chain IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:3664598|MGI:MGI:88446 (MGI:MGI:3663234|PMID:16492673), (MGI:MGI:3664596|PMID:15383546), (MGI:MGI:3694610|PMID:17029294), (MGI:MGI:5014156|PMID:21467034)
(PMID:11278977), (PMID:15095409), (PMID:9683580)
Ensembl
RGD
PMID:9683580, PMID:11278977, PMID:15095409, PMID:15383546, PMID:16492673, PMID:17029294, PMID:21467034, PMID:21873635 GO_REF:0000107, MGI:MGI:3663234, MGI:MGI:3664596, MGI:MGI:3694610, MGI:MGI:5014156, RGD:13792537 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:9425231)
(MGI:MGI:3047505|PMID:15199158)
RGD PMID:9425231, PMID:15199158 MGI:MGI:3047505 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
MGI:MGI:2180787|MGI:MGI:5550566 (MGI:MGI:4412116|PMID:19808781), (MGI:MGI:5568656|PMID:24312420), (MGI:MGI:5922181|PMID:26746240)
GO_REF:0000107
RGD
Ensembl
PMID:19808781, PMID:24312420, PMID:26746240 GO_REF:0000107, MGI:MGI:4412116, MGI:MGI:5568656, MGI:MGI:5922181 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Crtapl1 cartilage associated protein-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:122,394,451...122,402,198
Ensembl chr 8:122,417,532...122,421,384
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5544856|PMID:23979599)
Ensembl
UniProt
RGD
PMID:23979599 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5544856 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (MGI:MGI:5318020|PMID:19900459) RGD PMID:19900459 MGI:MGI:5318020 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dpt dermatopontin ISO
IBA
MGI:MGI:2387341 (MGI:MGI:2386368|PMID:12230512), (MGI:MGI:3655897|PMID:16877395)
PMID:21873635
RGD PMID:12230512, PMID:16877395, PMID:21873635 MGI:MGI:2386368, MGI:MGI:3655897, RGD:13792537 NCBI chr13:83,073,307...83,102,404
Ensembl chr13:83,073,544...83,102,401
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:MGI:6406768|PMID:19850926) RGD PMID:19850926 MGI:MGI:6406768 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fkbp10 FKBP prolyl isomerase 10 ISO MGI:MGI:5432211 (MGI:MGI:5585367|PMID:24777781), (MGI:MGI:6114458|PMID:28206698) RGD PMID:24777781, PMID:28206698 MGI:MGI:5585367, MGI:MGI:6114458 NCBI chr10:88,326,337...88,338,199
Ensembl chr10:88,326,080...88,338,207
JBrowse link
G Fmod fibromodulin IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:50,874,886...50,885,503
Ensembl chr13:50,873,605...50,885,563
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:MGI:1856705 (MGI:MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:MGI:1355577 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:1857865 (MGI:MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:MGI:1355577 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO MGI:MGI:2158463 (MGI:MGI:1353150|PMID:10660670) RGD PMID:10660670 MGI:MGI:1353150 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Lox lysyl oxidase IDA
IBA
ISO
IMP
PMID:21873635
MGI:MGI:3610732 (MGI:MGI:3604822|PMID:16192629), (MGI:MGI:5766417|PMID:26700732)
RGD PMID:16192629, PMID:26700732, PMID:16804742, PMID:21873635, PMID:16432278 MGI:MGI:3604822, MGI:MGI:5766417, RGD:1600668, RGD:13792537, RGD:1600669 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Loxl1 lysyl oxidase-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:63,067,757...63,092,124
Ensembl chr 8:63,067,300...63,092,009
JBrowse link
G Loxl2 lysyl oxidase-like 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21835952)
Ensembl
UniProt
RGD
PMID:21835952, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr15:51,276,022...51,365,238
Ensembl chr15:51,303,909...51,365,234
JBrowse link
G Loxl3 lysyl oxidase-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,866,782...113,883,713
Ensembl chr 4:113,866,804...113,883,477
JBrowse link
G Loxl4 lysyl oxidase-like 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:261,833,365...261,853,599
Ensembl chr 1:261,835,992...261,853,495
JBrowse link
G Lum lumican IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:38,820,058...38,826,862
Ensembl chr 7:38,819,771...38,826,862
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 ISO MGI:MGI:5007248 (MGI:MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:MGI:5008683 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Mkx mohawk homeobox ISO MGI:MGI:5287572 (MGI:MGI:5287220|PMID:20696843) RGD PMID:20696843 MGI:MGI:5287220 NCBI chr17:60,537,615...60,553,284
Ensembl chr17:60,537,935...60,549,750
JBrowse link
G Mmp11 matrix metallopeptidase 11 ISO MGI:MGI:2387934 (MGI:MGI:3822602|PMID:18622425) RGD PMID:18622425 MGI:MGI:3822602 NCBI chr20:13,670,051...13,678,834
Ensembl chr20:13,670,066...13,678,089
JBrowse link
G Nf1 neurofibromin 1 ISO
ISS
IEA
MGI:MGI:1857444 (MGI:MGI:1339276|PMID:10383727)
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:10383727 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1339276 NCBI chr10:66,732,460...66,928,706
Ensembl chr10:66,690,133...66,928,903
JBrowse link
G Optc opticin ISO (MGI:MGI:6148629|PMID:29323130) RGD PMID:29323130 MGI:MGI:6148629 NCBI chr13:50,735,509...50,748,908
Ensembl chr13:50,735,599...50,746,354
JBrowse link
G P3h1 prolyl 3-hydroxylase 1 ISO MGI:MGI:4830452 (MGI:MGI:4830073|PMID:20363744) RGD PMID:20363744 MGI:MGI:4830073 NCBI chr 5:138,279,597...138,294,280
Ensembl chr 5:138,279,506...138,294,262
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 ISO
IBA
ISS
(MGI:MGI:5779580|PMID:27119146)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27119146, PMID:21873635 GO_REF:0000024, MGI:MGI:5779580, RGD:13792537 NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
JBrowse link
G P4ha1 prolyl 4-hydroxylase subunit alpha 1 ISO MGI:MGI:3706369 (MGI:MGI:3706231|PMID:17135260) RGD PMID:17135260 MGI:MGI:3706231 NCBI chr20:28,920,616...28,972,576
Ensembl chr20:28,920,616...28,971,966
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 ISO MGI:MGI:3620600|MGI:MGI:3620603 (MGI:MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:MGI:3618677 NCBI chr12:22,716,421...22,726,982
Ensembl chr12:22,716,423...22,726,982
JBrowse link
G Pxdn peroxidasin ISO (PMID:22842973) RGD PMID:22842973 NCBI chr 6:48,866,496...48,982,368
Ensembl chr 6:48,866,601...48,980,340
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:4413438|PMID:18802027) RGD PMID:18802027 MGI:MGI:4413438 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Serpinf2 serpin family F member 2 ISO (MGI:MGI:5306295|PMID:17958745) RGD PMID:17958745 MGI:MGI:5306295 NCBI chr10:62,264,247...62,272,353
Ensembl chr10:62,264,788...62,273,119
JBrowse link
G Serpinh1 serpin family H member 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
MGI:MGI:2176070|MGI:MGI:2385994|MGI:MGI:5505265 (MGI:MGI:1890100|PMID:10995453), (MGI:MGI:5494537|PMID:22492985)
Ensembl
RGD
PMID:10995453, PMID:22492985, PMID:21873635 GO_REF:0000107, MGI:MGI:1890100, MGI:MGI:5494537, RGD:13792537 NCBI chr 1:164,301,010...164,308,306
Ensembl chr 1:164,301,010...164,308,317
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:3664776 (MGI:MGI:3839034|PMID:19079247) RGD PMID:19079247 MGI:MGI:3839034 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
ISS
(PMID:16891397)
GO_REF:0000024
RGD
UniProt
PMID:16891397 GO_REF:0000024 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:MGI:2388050 (MGI:MGI:3588906|PMID:15993878) RGD PMID:15993878 MGI:MGI:3588906 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tnxb tenascin XB ISO MGI:MGI:2181283|MGI:MGI:3053791 (MGI:MGI:2177884|PMID:11925569), (MGI:MGI:3052887|PMID:15194424) RGD PMID:11925569, PMID:15194424 MGI:MGI:2177884, MGI:MGI:3052887
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog ISO
IEA
MGI:MGI:3699244|MGI:MGI:5816979 (MGI:MGI:5804716|PMID:27435297)
GO_REF:0000107
RGD
Ensembl
PMID:27435297 GO_REF:0000107, MGI:MGI:5804716 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO MGI:MGI:3699244|MGI:MGI:5770088 (MGI:MGI:5804716|PMID:27435297) RGD PMID:27435297 MGI:MGI:5804716 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
negative regulation of collagen fibril organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chadl chondroadherin-like ISO (PMID:25451920) RGD PMID:25451920 NCBI chr 7:122,915,847...122,929,127
Ensembl chr 7:122,922,022...122,926,336
JBrowse link
G Emilin1 elastin microfibril interfacer 1 ISO (MGI:MGI:5605894|PMID:25056700) RGD PMID:25056700 MGI:MGI:5605894 NCBI chr 6:26,821,249...26,829,013
Ensembl chr 6:26,821,255...26,828,972
JBrowse link
positive regulation of collagen fibril organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 ISO (PMID:27402836) RGD PMID:27402836 NCBI chr16:20,039,969...20,052,277
Ensembl chr16:20,039,969...20,052,276
JBrowse link
G Rb1 RB transcriptional corepressor 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:6112863|PMID:29304157)
Ensembl
RGD
PMID:29304157 GO_REF:0000107, MGI:MGI:6112863 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
regulation of collagen fibril organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aebp1 AE binding protein 1 ISS
ISO
IEA
GO_REF:0000024
(PMID:29606302)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29606302 GO_REF:0000024, GO_REF:0000107 NCBI chr14:86,101,253...86,111,323
Ensembl chr14:86,101,277...86,111,306
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          supramolecular fiber organization 768
            collagen fibril organization 57
              negative regulation of collagen fibril organization 2
              positive regulation of collagen fibril organization 2
              regulation of collagen fibril organization + 5
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          extracellular structure organization 316
            extracellular matrix organization 315
              collagen fibril organization 57
                negative regulation of collagen fibril organization 2
                positive regulation of collagen fibril organization 2
                regulation of collagen fibril organization + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.