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ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
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Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068


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chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Banf1 BAF nuclear assembly factor 1 JBrowse link 1 220,744,195 220,746,224 RGD:13792537
G Banf2 BANF family member 2 JBrowse link 3 138,128,123 138,183,750 RGD:13792537
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:2301352
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:13792537
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:1300396
RGD:13792537
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:13792537
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1624291
RGD:13792537
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1600115
G Prm3 protamine 3 JBrowse link 10 4,951,557 4,952,071 RGD:1600115
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:633802
G Smc5 structural maintenance of chromosomes 5 JBrowse link 1 240,977,898 241,046,273 RGD:1624291
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1624291
apoptotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link 15 33,288,369 33,333,256 RGD:1624291
G Dffb DNA fragmentation factor subunit beta JBrowse link 5 171,250,559 171,261,875 RGD:1624291
G Ern2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 1 192,126,023 192,142,865 RGD:1624291
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:8553942
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:13792537
RGD:1624291
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1624291
meiotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Incenp inner centromere protein JBrowse link 1 225,923,448 225,953,384 RGD:13792537
G Mastl microtubule associated serine/threonine kinase-like JBrowse link 17 89,839,562 89,875,855 RGD:1624291
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:13792537
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:1624291
G Ncaph2 non-SMC condensin II complex, subunit H2 JBrowse link 7 130,326,597 130,343,655 RGD:1600115
RGD:13792537
RGD:1624291
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1624291
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1624291
mitotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8 A-kinase anchoring protein 8 JBrowse link 7 14,323,298 14,339,953 RGD:1624291
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
G Cdca5 cell division cycle associated 5 JBrowse link 1 221,448,661 221,462,235 RGD:1624291
G Chmp1a charged multivesicular body protein 1A JBrowse link 19 56,001,724 56,010,004 RGD:1624291
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
RGD:1624291
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:13792537
RGD:1624291
G Ncapg non-SMC condensin I complex, subunit G JBrowse link 14 69,898,268 69,927,885 RGD:1624291
RGD:13792537
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:13792537
RGD:1624291
G Ncaph2 non-SMC condensin II complex, subunit H2 JBrowse link 7 130,326,597 130,343,655 RGD:1600115
RGD:1624291
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:13792537
G Nusap1 nucleolar and spindle associated protein 1 JBrowse link 3 111,422,267 111,452,600 RGD:1624291
RGD:13792537
G Phf13 PHD finger protein 13 JBrowse link 5 169,161,412 169,167,831 RGD:1624291
RGD:13792537
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1624291
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1624291
RGD:13792537
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
negative regulation of chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
rDNA condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:13792537
regulation of chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1578405
G Mcph1 microcephalin 1 JBrowse link 16 75,904,087 76,110,624 RGD:1624291
G Wapl WAPL cohesin release factor JBrowse link 16 11,029,325 11,108,867 RGD:1624291
RGD:13792537

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Term Annotations click to browse term
  biological_process 19858
    cellular process 18617
      cellular component organization or biogenesis 6706
        cellular component organization 6456
          organelle organization 4029
            chromosome organization 1235
              DNA conformation change 305
                DNA packaging 215
                  chromosome condensation 46
                    apoptotic chromosome condensation 5
                    histone H3-S10 phosphorylation involved in chromosome condensation 1
                    meiotic chromosome condensation 8
                    mitotic chromosome condensation + 15
                    negative regulation of chromosome condensation + 2
                    nonrepetitive DNA condensation 0
                    positive regulation of chromosome condensation + 0
                    rDNA condensation 1
                    regulation of chromosome condensation + 5
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.