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ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
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Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068


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chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AIFM1 apoptosis inducing factor mitochondria associated 1 TAS (PMID:18309324) UniProtKB PMID:18309324 NCBI chr  X:130,129,362...130,165,841
Ensembl chr  X:130,124,666...130,165,879
Ensembl chr  X:130,124,666...130,165,879
JBrowse link
G BANF1 BAF nuclear assembly factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:66,002,079...66,004,149
Ensembl chr11:66,002,228...66,004,149
JBrowse link
G BANF2 BANF family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:17,693,672...17,735,872
Ensembl chr20:17,693,672...17,735,871
JBrowse link
G CDK1 cyclin dependent kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:60,778,331...60,794,852
Ensembl chr10:60,778,331...60,794,852
JBrowse link
G H1-0 H1.0 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:37,805,229...37,807,432
Ensembl chr22:37,805,093...37,807,436
JBrowse link
G H1-1 H1.1 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,017,032...26,017,787
Ensembl chr 6:26,017,085...26,017,732
Ensembl chr 6:26,017,085...26,017,732
JBrowse link
G H1-10 H1.10 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:129,314,771...129,316,286
Ensembl chr 3:129,314,771...129,316,286
JBrowse link
G H1-2 H1.2 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,055,740...26,056,470
Ensembl chr 6:26,055,787...26,056,428
Ensembl chr 6:26,055,787...26,056,428
JBrowse link
G H1-3 H1.3 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,234,212...26,234,987
Ensembl chr 6:26,234,268...26,234,933
Ensembl chr 6:26,234,268...26,234,933
JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,156,329...26,157,115
Ensembl chr 6:26,156,354...26,157,107
Ensembl chr 6:26,156,354...26,157,107
JBrowse link
G H1-5 H1.5 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:27,866,792...27,867,588
Ensembl chr 6:27,866,849...27,867,529
Ensembl chr 6:27,866,849...27,867,529
JBrowse link
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:26,107,412...26,108,135
Ensembl chr 6:26,107,419...26,108,136
Ensembl chr 6:26,107,419...26,108,136
JBrowse link
G H1-7 H1.7 linker histone IEA UniProt GO_REF:0000043 NCBI chr12:48,328,980...48,330,279
Ensembl chr12:48,328,980...48,330,279
JBrowse link
G H1-8 H1.8 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:129,543,175...129,555,185
Ensembl chr 3:129,543,214...129,551,467
JBrowse link
G H1-9P H1.9 linker histone, pseudogene IDA
IBA
(PMID:12920187)
(PMID:21873635)
UniProtKB
GO_Central
PMID:12920187, PMID:21873635 NCBI chr17:50,171,428...50,172,476
Ensembl chr17:50,171,428...50,181,178
JBrowse link
G HMGA2 high mobility group AT-hook 2 IEA UniProt GO_REF:0000043 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G NCAPG2 non-SMC condensin II complex subunit G2 IEA UniProt GO_REF:0000043 NCBI chr 7:158,631,169...158,704,816
Ensembl chr 7:158,631,169...158,704,804
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IEA UniProt GO_REF:0000043 NCBI chr22:50,508,218...50,524,780
Ensembl chr22:50,508,224...50,524,780
JBrowse link
G PRM1 protamine 1 IEA UniProt GO_REF:0000043 NCBI chr16:11,280,841...11,281,330
Ensembl chr16:11,280,841...11,281,330
JBrowse link
G PRM2 protamine 2 IEA UniProt GO_REF:0000043 NCBI chr16:11,275,639...11,276,480
Ensembl chr16:11,275,639...11,276,480
JBrowse link
G PRM3 protamine 3 IEA UniProt GO_REF:0000043 NCBI chr16:11,273,199...11,273,629
Ensembl chr16:11,273,199...11,273,629
JBrowse link
G SMC5 structural maintenance of chromosomes 5 IEA Ensembl GO_REF:0000107 NCBI chr 9:70,258,962...70,354,873
Ensembl chr 9:70,258,978...70,354,873
JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr17:40,388,525...40,417,902
Ensembl chr17:40,388,525...40,417,896
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 IDA (PMID:10490026) UniProtKB PMID:10490026 NCBI chr14:23,058,564...23,095,614
Ensembl chr14:23,058,564...23,095,614
JBrowse link
G DFFB DNA fragmentation factor subunit beta IDA (PMID:10959840) UniProtKB PMID:10959840 NCBI chr 1:3,857,286...3,885,429
Ensembl chr 1:3,857,267...3,885,429
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 IMP (PMID:11175748) UniProtKB PMID:11175748 NCBI chr16:23,690,310...23,713,248
Ensembl chr16:23,690,310...23,713,226
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 ISS UniProtKB GO_REF:0000024 NCBI chr 7:1,087,118...1,093,810
Ensembl chr 7:1,082,208...1,093,815
JBrowse link
G TOP2A DNA topoisomerase II alpha IDA
IBA
(PMID:10959840)
(PMID:21873635)
UniProtKB
GO_Central
PMID:10959840, PMID:21873635 NCBI chr17:40,388,525...40,417,902
Ensembl chr17:40,388,525...40,417,896
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 IEA Ensembl GO_REF:0000107 NCBI chr 5:69,167,150...69,178,245
Ensembl chr 5:69,167,135...69,178,245
JBrowse link
G MIR744 microRNA 744 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr17:12,081,899...12,081,996
Ensembl chr17:12,081,899...12,081,996
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INCENP inner centromere protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:62,123,998...62,155,474
Ensembl chr11:62,123,998...62,153,169
JBrowse link
G MASTL microtubule associated serine/threonine kinase like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr10:27,154,479...27,187,953
Ensembl chr10:27,154,824...27,186,924
Ensembl chr10:27,154,824...27,186,924
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:6,494,102...6,531,955
Ensembl chr12:6,493,356...6,531,955
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr11:134,150,113...134,225,461
Ensembl chr11:134,150,119...134,225,454
Ensembl chr11:134,150,119...134,225,454
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IEA Ensembl GO_REF:0000107 NCBI chr 2:96,335,766...96,377,091
Ensembl chr 2:96,335,766...96,377,091
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:50,508,218...50,524,780
Ensembl chr22:50,508,224...50,524,780
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:104,093,760...104,141,419
Ensembl chr 9:104,094,260...104,141,419
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:160,399,638...160,434,953
Ensembl chr 3:160,399,274...160,434,954
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 IEA Ensembl GO_REF:0000107 NCBI chr19:15,353,385...15,379,787
Ensembl chr19:15,353,385...15,379,798
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like IMP (PMID:11034899) UniProtKB PMID:11034899 NCBI chr19:15,380,050...15,418,988
Ensembl chr19:15,380,050...15,419,141
JBrowse link
G CDCA5 cell division cycle associated 5 IMP (PMID:15837422) UniProtKB PMID:15837422 NCBI chr11:65,061,009...65,084,129
Ensembl chr11:65,066,300...65,084,164
JBrowse link
G CHMP1A charged multivesicular body protein 1A IEA
IDA
(PMID:11559747) InterPro
UniProtKB
PMID:11559747 GO_REF:0000002 NCBI chr16:89,644,435...89,657,708
Ensembl chr16:89,640,816...89,657,738
Ensembl chr16:89,640,816...89,657,738
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IEA
IMP
IBA
IDA
NAS
(PMID:27737959)
(PMID:21873635)
(PMID:11136719)
(PMID:10958694)
InterPro
UniProt
GO_Central
UniProtKB
PMID:10958694, PMID:11136719, PMID:21873635, PMID:27737959 GO_REF:0000002 NCBI chr12:6,494,102...6,531,955
Ensembl chr12:6,493,356...6,531,955
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IMP
IBA
IDA
(PMID:27737959)
(PMID:21873635)
(PMID:14532007)
InterPro
UniProt
GO_Central
UniProtKB
PMID:14532007, PMID:21873635, PMID:27737959 GO_REF:0000002 NCBI chr11:134,150,113...134,225,461
Ensembl chr11:134,150,119...134,225,454
Ensembl chr11:134,150,119...134,225,454
JBrowse link
G NCAPG non-SMC condensin I complex subunit G IEA
IBA
IDA
NAS
(PMID:21873635)
(PMID:11136719)
(PMID:10910072)
InterPro
GO_Central
UniProtKB
PMID:10910072, PMID:11136719, PMID:21873635 GO_REF:0000002 NCBI chr 4:17,810,942...17,844,865
Ensembl chr 4:17,810,979...17,844,865
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IEA
IMP
IBA
IDA
(PMID:27737959)
(PMID:21873635)
(PMID:11136719), (PMID:11694586)
InterPro
UniProt
GO_Central
UniProtKB
PMID:11136719, PMID:11694586, PMID:21873635, PMID:27737959 GO_REF:0000002 NCBI chr 2:96,335,766...96,377,091
Ensembl chr 2:96,335,766...96,377,091
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 ISS UniProt GO_REF:0000024 NCBI chr22:50,508,218...50,524,780
Ensembl chr22:50,508,224...50,524,780
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 IDA
IBA
(PMID:12963707)
(PMID:21873635)
MGI
GO_Central
PMID:12963707, PMID:21873635 NCBI chr15:41,332,841...41,381,050
Ensembl chr15:41,320,794...41,381,050
JBrowse link
G PHF13 PHD finger protein 13 IMP
IBA
(PMID:19638409)
(PMID:21873635)
UniProtKB
GO_Central
PMID:19638409, PMID:21873635 NCBI chr 1:6,613,731...6,624,030
Ensembl chr 1:6,613,731...6,624,030
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IDA (PMID:11136719) UniProtKB PMID:11136719 NCBI chr 9:104,093,760...104,141,419
Ensembl chr 9:104,094,260...104,141,419
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IDA
IBA
(PMID:11136719)
(PMID:21873635)
UniProtKB
GO_Central
PMID:11136719, PMID:21873635 NCBI chr 3:160,399,638...160,434,953
Ensembl chr 3:160,399,274...160,434,954
JBrowse link
G TENT4A terminal nucleotidyltransferase 4A NAS (PMID:10066793) UniProtKB PMID:10066793 NCBI chr 5:6,713,432...6,757,045
Ensembl chr 5:6,713,432...6,757,044
JBrowse link
G TTN titin IEP (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr 2:178,525,989...178,807,423
Ensembl chr 2:178,525,989...178,830,802
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 1:226,061,831...226,072,019
Ensembl chr 1:226,061,851...226,073,212
Ensembl chr 1:226,061,851...226,073,212
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr17:75,776,434...75,779,779
Ensembl chr17:75,776,434...75,785,893
JBrowse link
rDNA condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 IEA Ensembl GO_REF:0000107 NCBI chr 5:69,167,150...69,178,245
Ensembl chr 5:69,167,135...69,178,245
JBrowse link
G MCPH1 microcephalin 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:6,406,615...6,648,508
Ensembl chr 8:6,406,596...6,648,508
JBrowse link
G WAPL WAPL cohesin release factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:86,435,256...86,521,816
Ensembl chr10:86,435,256...86,521,792
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    cellular process 17648
      cellular component organization or biogenesis 7120
        cellular component organization 6929
          organelle organization 4320
            chromosome organization 1335
              DNA conformation change 375
                DNA packaging 256
                  chromosome condensation 50
                    apoptotic chromosome condensation 5
                    histone H3-S10 phosphorylation involved in chromosome condensation 2
                    meiotic chromosome condensation 8
                    mitotic chromosome condensation + 16
                    negative regulation of chromosome condensation + 2
                    nonrepetitive DNA condensation 0
                    positive regulation of chromosome condensation + 0
                    rDNA condensation 1
                    regulation of chromosome condensation + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.