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ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
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Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068


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chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:5,364,633...5,366,876
Ensembl chr19:5,364,638...5,367,168
JBrowse link
G Banf2 BANF family member 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:144,033,102...144,073,979
Ensembl chr 2:144,033,059...144,073,979
JBrowse link
G Cdk1 cyclin-dependent kinase 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr10:69,335,146...69,352,912
Ensembl chr10:69,335,146...69,352,938
JBrowse link
G H1f0 H1.0 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:79,028,212...79,030,504
Ensembl chr15:79,028,450...79,030,504
JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,763,668...23,764,412
Ensembl chr13:23,763,666...23,764,406
JBrowse link
G H1f10 H1.10 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:87,980,421...87,981,482
Ensembl chr 6:87,980,421...87,981,637
JBrowse link
G H1f2 H1.2 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,738,807...23,739,531
Ensembl chr13:23,738,808...23,740,367
JBrowse link
G H1f3 H1.3 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,555,032...23,555,807
Ensembl chr13:23,553,262...23,560,686
JBrowse link
G H1f4 H1.4 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,621,777...23,622,558
Ensembl chr13:23,620,629...23,622,558
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:21,779,832...21,780,625
Ensembl chr13:21,779,883...21,780,625
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,695,811...23,696,545
Ensembl chr13:23,695,814...23,696,725
JBrowse link
G H1f7 H1.7 linker histone TAS (MGI:MGI:3808932|PMID:18689890) MGI PMID:18689890 MGI:MGI:3808932 NCBI chr15:98,255,982...98,257,307
Ensembl chr15:98,255,986...98,257,293
JBrowse link
G H1f8 H1.8 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:115,944,931...115,950,242
Ensembl chr 6:115,944,938...115,950,236
JBrowse link
G H1f9 H1.9 linker histone TAS
IBA
(MGI:MGI:3808932|PMID:18689890)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18689890, PMID:21873635 MGI:MGI:3808932, MGI:MGI:6201960 NCBI chr11:94,967,593...94,968,456
Ensembl chr11:94,967,593...94,968,456
JBrowse link
G Hmga2 high mobility group AT-hook 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr12:116,405,351...116,463,532
Ensembl chr12:116,405,402...116,463,731
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Phf13 PHD finger protein 13 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:151,989,631...151,996,179
Ensembl chr 4:151,989,633...151,996,258
JBrowse link
G Prm1 protamine 1 TAS (MGI:MGI:57381|PMID:3676400) MGI PMID:3676400 MGI:MGI:57381 NCBI chr16:10,796,332...10,796,823
Ensembl chr16:10,796,326...10,805,839
JBrowse link
G Prm2 protamine 2 TAS (MGI:MGI:57381|PMID:3676400) MGI PMID:3676400 MGI:MGI:57381 NCBI chr16:10,791,377...10,792,105
Ensembl chr16:10,791,380...10,796,134
JBrowse link
G Prm3 protamine 3 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr16:10,790,508...10,790,914
Ensembl chr16:10,790,505...10,790,914
JBrowse link
G Smc2 structural maintenance of chromosomes 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
G Smc5 structural maintenance of chromosomes 5 IMP (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr19:23,206,441...23,273,922
Ensembl chr19:23,206,451...23,273,897
JBrowse link
G Top2a topoisomerase (DNA) II alpha IMP (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:54,642,161...54,686,965
Ensembl chr14:54,642,161...54,686,931
JBrowse link
G Dffb DNA fragmentation factor, beta subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:153,964,447...153,975,121
Ensembl chr 4:153,964,449...153,975,126
JBrowse link
G Ern2 endoplasmic reticulum (ER) to nucleus signalling 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:122,169,893...122,186,239
Ensembl chr 7:122,169,893...122,186,207
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 5:139,423,150...139,427,800
Ensembl chr 5:139,423,151...139,427,800
JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IDA (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Mir744 microRNA 744 IDA (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr11:65,734,733...65,734,832
Ensembl chr11:65,734,733...65,734,832
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:9,872,295...9,899,489
Ensembl chr19:9,872,296...9,899,551
JBrowse link
G Mastl microtubule associated serine/threonine kinase-like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr 2:23,116,539...23,156,024
Ensembl chr 2:23,115,606...23,156,024
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IMP
IGI
(MGI:MGI:5317363|PMID:21795393)
(MGI:MGI:5784807|PMID:25961503)
MGI PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IMP
IBA
(MGI:MGI:5784807|PMID:25961503)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:25961503 MGI:MGI:5784807, MGI:MGI:6201960 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Smc2 structural maintenance of chromosomes 2 IMP (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 IMP (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A kinase (PRKA) anchor protein 8 IDA
ISO
(MGI:MGI:3512088|PMID:12082153) MGI PMID:12082153 GO_REF:0000008, MGI:MGI:2154458, MGI:MGI:3512088 NCBI chr17:32,303,672...32,321,238
Ensembl chr17:32,303,672...32,321,238
JBrowse link
G Akap8l A kinase (PRKA) anchor protein 8-like ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:32,321,424...32,350,616
Ensembl chr17:32,321,424...32,350,607
JBrowse link
G Cdca5 cell division cycle associated 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:6,085,097...6,091,773
Ensembl chr19:6,084,983...6,091,777
JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:123,204,261...123,212,788
Ensembl chr 8:123,204,264...123,212,763
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 5:45,669,891...45,700,547
Ensembl chr 5:45,669,919...45,700,546
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IMP (MGI:MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:MGI:5905517 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Nipbl NIPBL cohesin loading factor IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO
IBA
(MGI:MGI:2675533|PMID:12963707)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12963707, PMID:21873635 MGI:MGI:2675533, MGI:MGI:6201960 NCBI chr 2:119,618,298...119,650,165
Ensembl chr 2:119,618,298...119,651,244
JBrowse link
G Phf13 PHD finger protein 13 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:151,989,631...151,996,179
Ensembl chr 4:151,989,633...151,996,258
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
G Ttn titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr 2:76,703,980...76,982,557
Ensembl chr 2:76,703,980...76,982,547
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3.3 histone A IGI (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B IGI (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
rDNA condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL cohesin loading factor IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Mcph1 microcephaly, primary autosomal recessive 1 IMP (MGI:MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:MGI:4437500 NCBI chr 8:18,595,116...18,808,089
Ensembl chr 8:18,595,131...18,803,189
JBrowse link
G Wapl WAPL cohesin release factor IMP
IBA
(MGI:MGI:5544860|PMID:23975099)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:23975099 MGI:MGI:5544860, MGI:MGI:6201960 NCBI chr14:34,672,379...34,747,983
Ensembl chr14:34,673,928...34,747,983
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    cellular process 17359
      cellular component organization or biogenesis 6385
        cellular component organization 6197
          organelle organization 3829
            chromosome organization 1172
              DNA conformation change 251
                DNA packaging 206
                  chromosome condensation 48
                    apoptotic chromosome condensation 5
                    histone H3-S10 phosphorylation involved in chromosome condensation 2
                    meiotic chromosome condensation 8
                    mitotic chromosome condensation + 15
                    negative regulation of chromosome condensation + 2
                    nonrepetitive DNA condensation 0
                    positive regulation of chromosome condensation + 0
                    rDNA condensation 1
                    regulation of chromosome condensation + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.