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ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
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Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068


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chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BANF1 BAF nuclear assembly factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:6,333,451...6,335,326 JBrowse link
G BANF2 BANF family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:26,138,520...26,175,665
Ensembl chr17:26,131,001...26,175,669
JBrowse link
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr14:64,233,945...64,255,290
Ensembl chr14:64,233,988...64,395,453
JBrowse link
G H1-3 H1.3 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G PRM1 protamine 1 IEA UniProt GO_REF:0000043 NCBI chr 3:31,861,087...31,861,529
Ensembl chr 3:31,861,128...31,861,385
JBrowse link
G PRM2 protamine 2 IEA UniProt GO_REF:0000043 NCBI chr 3:31,864,350...31,864,959
Ensembl chr 3:31,864,323...31,865,023
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA UniProt GO_REF:0000043 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr 1:223,560,271...223,653,370 JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,951,203...75,989,234
Ensembl chr 7:75,951,203...75,989,231
JBrowse link
G DFFB DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chr 6:65,310,868...65,323,816
Ensembl chr 6:65,310,863...65,323,816
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:22,510,067...22,537,872
Ensembl chr 3:22,509,773...22,537,868
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 3:711,427...715,982
Ensembl chr 3:712,160...715,982
JBrowse link
G TOP2A DNA topoisomerase II alpha IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 IEA Ensembl GO_REF:0000107 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MIR744 microRNA mir-744 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr12:56,464,848...56,464,927
Ensembl chr12:56,464,848...56,464,927
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INCENP inner centromere protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G MASTL microtubule associated serine/threonine kinase like IMP (PMID:23843240) AgBase PMID:23843240 NCBI chr10:48,855,895...48,877,504
Ensembl chr10:48,856,072...48,880,475
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IEA Ensembl GO_REF:0000107 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA Ensembl GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 IEA Ensembl GO_REF:0000107 NCBI chr 2:62,222,060...62,241,631
Ensembl chr 2:62,222,249...62,241,611
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like IEA Ensembl GO_REF:0000107 NCBI chr 2:62,184,735...62,241,631
Ensembl chr 2:62,155,437...62,221,936
JBrowse link
G CDCA5 cell division cycle associated 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:7,103,648...7,112,772
Ensembl chr 2:7,102,982...7,113,202
JBrowse link
G CHMP1A charged multivesicular body protein 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,922...358,655
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPG non-SMC condensin I complex subunit G IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 8:12,759,225...12,807,164
Ensembl chr 8:12,759,639...12,810,050
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IEA Ensembl GO_REF:0000107 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:129,992,797...130,065,641 JBrowse link
G PHF13 PHD finger protein 13 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:67,445,960...67,452,144
Ensembl chr 6:67,445,977...67,454,191
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
G TTN titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr15:84,226,953...84,501,320 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
rDNA condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MCPH1 microcephalin 1 IEA Ensembl GO_REF:0000107 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,526...37,673,663
JBrowse link
G WAPL WAPL cohesin release factor IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr14:87,492,452...87,588,678
Ensembl chr14:87,492,453...87,588,570
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    cellular process 15759
      cellular component organization or biogenesis 5963
        cellular component organization 5794
          organelle organization 3643
            chromosome organization 1086
              DNA conformation change 254
                DNA packaging 174
                  chromosome condensation 39
                    apoptotic chromosome condensation 5
                    histone H3-S10 phosphorylation involved in chromosome condensation 2
                    meiotic chromosome condensation 8
                    mitotic chromosome condensation + 15
                    negative regulation of chromosome condensation + 2
                    nonrepetitive DNA condensation 0
                    positive regulation of chromosome condensation + 0
                    rDNA condensation 1
                    regulation of chromosome condensation + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.