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ONTOLOGY REPORT - ANNOTATIONS


Term:chromosome condensation
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Accession:GO:0030261 term browser browse the term
Definition:The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
Synonyms:exact_synonym: eukaryotic chromosome condensation;   nuclear chromosome condensation
 broad_synonym: DNA condensation
 alt_id: GO:0000068


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chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,744,195...220,746,224
Ensembl chr 1:220,744,195...220,746,224
JBrowse link
G Banf2 BANF family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:138,128,123...138,183,750
Ensembl chr 3:138,174,054...138,183,696
JBrowse link
G Cdk1 cyclin-dependent kinase 1 IMP RGD PMID:15695611 RGD:2301352 NCBI chr20:20,576,341...20,591,510
Ensembl chr20:20,576,377...20,591,549
JBrowse link
G H1f0 H1 histone family, member 0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12211017, PMID:21873635 RGD:1300396, RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f7 H1.7 linker histone IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:139,871,491...139,872,858
Ensembl chr 7:139,871,479...139,872,900
JBrowse link
G H1f8 H1.8 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 ISO
IBA
(PMID:12920187)
PMID:21873635
RGD PMID:12920187, PMID:21873635 RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Prm1 protamine 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,945,995...4,946,241
Ensembl chr10:4,945,911...4,946,397
JBrowse link
G Prm2 protamine 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,950,484...4,950,920
Ensembl chr10:4,950,484...4,950,920
JBrowse link
G Prm3 protamine 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,951,557...4,952,071
Ensembl chr10:4,951,557...4,952,071
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 TAS RGD PMID:12126956 RGD:633802 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Smc5 structural maintenance of chromosomes 5 ISO MGI:MGI:5882566 (MGI:MGI:5882483|PMID:26919979) RGD PMID:26919979 MGI:MGI:5882483 NCBI chr 1:240,977,898...241,046,273
Ensembl chr 1:240,977,898...241,046,256
JBrowse link
G Top2a DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) RGD PMID:11835580 MGI:MGI:2158879 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:33,288,369...33,333,256
Ensembl chr15:33,288,374...33,333,417
JBrowse link
G Dffb DNA fragmentation factor subunit beta ISO (PMID:10959840) RGD PMID:10959840 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10959840)
Ensembl
RGD
PMID:10959840, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) RGD PMID:22053081 MGI:MGI:5494393 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
JBrowse link
G Mastl microtubule associated serine/threonine kinase-like ISO (PMID:23843240) RGD PMID:23843240 NCBI chr17:89,839,562...89,875,855
Ensembl chr17:89,742,140...89,876,825
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,682,855...157,705,903
Ensembl chr 4:157,683,077...157,704,596
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:28,075,629...28,145,024
Ensembl chr 8:28,075,551...28,144,741
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H ISO MGI:MGI:1289164 (MGI:MGI:5317363|PMID:21795393), (MGI:MGI:5784807|PMID:25961503) RGD PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chr 3:119,583,798...119,611,148
Ensembl chr 3:119,583,648...119,611,136
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5784807|PMID:25961503)
Ensembl
RGD
PMID:25961503, PMID:21873635 GO_REF:0000107, MGI:MGI:5784807, RGD:13792537 NCBI chr 7:130,326,597...130,343,655
Ensembl chr 7:130,326,600...130,342,493
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (MGI:MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:MGI:5317363 NCBI chr 5:68,717,509...68,764,080
Ensembl chr 5:68,717,519...68,763,850
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (MGI:MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:MGI:5317363 NCBI chr 2:165,600,934...165,629,415
Ensembl chr 2:165,601,007...165,629,415
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 ISO (MGI:MGI:3512088|PMID:12082153) RGD PMID:12082153 MGI:MGI:3512088 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918
JBrowse link
G Akap8l A-kinase anchoring protein 8 like ISO (PMID:11034899) RGD PMID:11034899 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Cdca5 cell division cycle associated 5 ISO (PMID:15837422) RGD PMID:15837422 NCBI chr 1:221,448,661...221,462,235
Ensembl chr 1:221,448,661...221,462,233
JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:27737959)
RGD PMID:11136719, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 4:157,682,855...157,705,903
Ensembl chr 4:157,683,077...157,704,596
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA
ISO
PMID:21873635
(PMID:14532007), (PMID:27737959)
RGD PMID:14532007, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 8:28,075,629...28,145,024
Ensembl chr 8:28,075,551...28,144,741
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719, PMID:21873635 RGD:13792537 NCBI chr14:69,898,268...69,927,885
Ensembl chr14:69,899,128...69,927,938
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:11694586), (PMID:27737959)
RGD PMID:11136719, PMID:11694586, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 3:119,583,798...119,611,148
Ensembl chr 3:119,583,648...119,611,136
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:5905517|PMID:27737959)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27737959 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5905517 NCBI chr 7:130,326,597...130,343,655
Ensembl chr 7:130,326,600...130,342,493
JBrowse link
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO
IBA
(PMID:12963707)
PMID:21873635
RGD PMID:12963707, PMID:21873635 RGD:13792537 NCBI chr 3:111,422,267...111,452,600
Ensembl chr 3:111,422,267...111,452,971
JBrowse link
G Phf13 PHD finger protein 13 ISO
IBA
(PMID:19638409)
PMID:21873635
RGD PMID:19638409, PMID:21873635 RGD:13792537 NCBI chr 5:169,161,412...169,167,831
Ensembl chr 5:169,161,412...169,167,831
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (PMID:11136719) RGD PMID:11136719 NCBI chr 5:68,717,509...68,764,080
Ensembl chr 5:68,717,519...68,763,850
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719, PMID:21873635 RGD:13792537 NCBI chr 2:165,600,934...165,629,415
Ensembl chr 2:165,601,007...165,629,415
JBrowse link
G Ttn titin ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:63,565,160...63,837,815 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:MGI:5502235 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:MGI:5502235 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
rDNA condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
G Mcph1 microcephalin 1 ISO MGI:MGI:4332146 (MGI:MGI:4437500|PMID:20169082) RGD PMID:20169082 MGI:MGI:4437500 NCBI chr16:75,904,087...76,110,624
Ensembl chr16:75,904,006...76,110,553
JBrowse link
G Wapl WAPL cohesin release factor ISO
IBA
MGI:MGI:5551791|MGI:MGI:5551807 (MGI:MGI:5544860|PMID:23975099)
PMID:21873635
RGD PMID:23975099, PMID:21873635 MGI:MGI:5544860, RGD:13792537 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          organelle organization 4072
            chromosome organization 1250
              DNA conformation change 312
                DNA packaging 215
                  chromosome condensation 46
                    apoptotic chromosome condensation 5
                    histone H3-S10 phosphorylation involved in chromosome condensation 1
                    meiotic chromosome condensation 8
                    mitotic chromosome condensation + 15
                    negative regulation of chromosome condensation + 2
                    nonrepetitive DNA condensation 0
                    positive regulation of chromosome condensation + 0
                    rDNA condensation 1
                    regulation of chromosome condensation + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.