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ONTOLOGY REPORT - ANNOTATIONS


Term:apoptotic nuclear changes
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Accession:GO:0030262 term browser browse the term
Definition:Alterations undergone by nuclei at the molecular and morphological level as part of the execution phase of apoptosis.
Synonyms:narrow_synonym: apoptotic nuclear change


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apoptotic nuclear changes term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C IEA
ISO
GO_REF:0000107
(PMID:15531507)
Ensembl
RGD
PMID:15531507 GO_REF:0000107 NCBI chr 3:44,272,859...44,342,501
Ensembl chr 3:44,270,653...44,342,355
JBrowse link
G Blcap BLCAP, apoptosis inducing factor ISO (PMID:17031575) RGD PMID:17031575 NCBI chr 3:154,040,165...154,042,096
Ensembl chr 3:154,040,166...154,042,099
JBrowse link
G Cd24 CD24 molecule ISO (MGI:2686748|PMID:14707049) RGD PMID:14707049 MGI:2686748 NCBI chr20:48,335,540...48,340,847
Ensembl chr20:48,335,540...48,340,846
JBrowse link
G Cdk5rap3 CDK5 regulatory subunit associated protein 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23478299)
Ensembl
UniProt
RGD
PMID:23478299 GO_REF:0000024, GO_REF:0000107 NCBI chr10:84,780,644...84,789,800
Ensembl chr10:84,780,608...84,789,832
JBrowse link
G Dedd2 death effector domain containing 2 ISO (PMID:11741985) RGD PMID:11741985 NCBI chr 1:82,073,024...82,089,028
Ensembl chr 1:82,072,544...82,088,275
JBrowse link
G Sharpin SHANK-associated RH domain interactor ISO MGI:1856699 (MGI:75289|PMID:7792947) RGD PMID:7792947 MGI:75289 NCBI chr 7:117,413,151...117,417,455
Ensembl chr 7:117,413,152...117,417,363
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:33,288,369...33,333,256
Ensembl chr15:33,288,374...33,333,417
JBrowse link
G Dffb DNA fragmentation factor subunit beta ISO (PMID:10959840) RGD PMID:10959840 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10959840)
Ensembl
RGD
PMID:10959840, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Dffb DNA fragmentation factor subunit beta IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:15572351), (PMID:22253444)
InterPro
RGD
PMID:15572351, PMID:22253444, PMID:11425895, PMID:21873635 GO_REF:0000002, RGD:628524, RGD:13792537 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnase1l3 deoxyribonuclease 1-like 3 TAS
ISO
IBA
(MGI:2385551|PMID:12050166)
PMID:21873635
(PMID:23229555)
RGD PMID:12050166, PMID:23229555, PMID:9665719, PMID:21873635 MGI:2385551, RGD:728743, RGD:13792537 NCBI chr15:18,710,492...18,736,476
Ensembl chr15:18,710,492...18,736,473
JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:26,022,855...26,025,523
Ensembl chr19:26,022,849...26,025,532
JBrowse link
G Dnase2b deoxyribonuclease 2 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:252,436,363...252,475,506
Ensembl chr 2:252,436,332...252,451,999
JBrowse link
G Endog endonuclease G IBA
ISO
PMID:21873635
MGI:3034030|MGI:3514265 (MGI:3029597|PMID:14663139)
RGD PMID:14663139, PMID:21873635 MGI:3029597, RGD:13792537 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Exog exo/endonuclease G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Foxl2 forkhead box L2 ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675
JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha ISO (PMID:15572351)
MGI:2179456 (MGI:2182584|PMID:10601318), (MGI:3029597|PMID:14663139)
RGD PMID:10601318, PMID:14663139, PMID:15572351 MGI:2182584, MGI:3029597 NCBI chr 5:165,922,893...165,935,822
Ensembl chr 5:165,922,915...165,935,821
JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IMP RGD PMID:27184051 RGD:13781945 NCBI chr 5:166,409,460...166,430,291
Ensembl chr 5:166,409,461...166,430,254
JBrowse link
G Pam16 presequence translocase associated motor 16 IDA RGD PMID:24069394 RGD:13462066 NCBI chr10:11,146,359...11,153,936
Ensembl chr10:11,146,359...11,153,936
JBrowse link
nuclear fragmentation involved in apoptotic nuclear change term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gper1 G protein-coupled estrogen receptor 1 IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator ISO
IEA
(PMID:11350920)
GO_REF:0000107
RGD
Ensembl
PMID:11350920 GO_REF:0000107 NCBI chr 1:101,451,801...101,457,207
Ensembl chr 1:101,451,802...101,457,207
JBrowse link
G Endog endonuclease G IMP RGD PMID:16407272 RGD:9685355 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:21192280 RGD:10403035 NCBI chr 7:117,538,523...117,565,478
Ensembl chr 7:117,538,523...117,565,478
JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 IMP RGD PMID:15125883 RGD:10402776 NCBI chr14:87,457,647...87,465,374
Ensembl chr14:87,457,647...87,465,374
JBrowse link
G Il6 interleukin 6 ISO (PMID:28433754) RGD PMID:28433754 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 ISO MGI:1306796 (MGI:3577148|PMID:15703386) RGD PMID:15703386 MGI:3577148 NCBI chr  X:135,304,063...135,343,062
Ensembl chr  X:135,304,066...135,343,087
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 ISO MGI:1349414 (MGI:3577148|PMID:15703386) RGD PMID:15703386 MGI:3577148 NCBI chr 7:31,699,309...31,784,192
Ensembl chr 7:31,699,885...31,784,192
JBrowse link
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (PMID:12082630) RGD PMID:12082630 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Cidea cell death-inducing DFFA-like effector a ISO (MGI:1203887|PMID:9564035) RGD PMID:9564035 MGI:1203887 NCBI chr18:63,082,861...63,108,450
Ensembl chr18:63,098,144...63,108,051
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      execution phase of apoptosis 74
        cellular component disassembly involved in execution phase of apoptosis 30
          apoptotic nuclear changes 29
            apoptotic DNA fragmentation + 19
            apoptotic chromosome condensation 5
            nuclear fragmentation involved in apoptotic nuclear change 1
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cell death 2144
        programmed cell death 1955
          apoptotic process 1898
            execution phase of apoptosis 74
              cellular component disassembly involved in execution phase of apoptosis 30
                apoptotic nuclear changes 29
                  apoptotic DNA fragmentation + 19
                  apoptotic chromosome condensation 5
                  nuclear fragmentation involved in apoptotic nuclear change 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.