Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:bone mineralization
go back to main search page
Accession:GO:0030282 term browser browse the term
Definition:The deposition of hydroxyapatite, a form of calcium phosphate with the formula Ca10(PO4)6(OH)2, in bone tissue.
Synonyms:narrow_synonym: bone calcification


show annotations for term's descendants           Sort by:
 
bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase ISO
ISS
MGI:MGI:1857428 (MGI:MGI:2686849|PMID:14716014)
GO_REF:0000024
RGD
UniProt
PMID:14716014 GO_REF:0000024, MGI:MGI:2686849 NCBI chr10:56,953,692...56,962,145
Ensembl chr10:56,953,691...56,962,161
JBrowse link
G Asgr2 asialoglycoprotein receptor 2 IEP RGD PMID:19841953 RGD:2316850 NCBI chr10:56,710,446...56,723,608
Ensembl chr10:56,710,464...56,723,611
JBrowse link
G Aspn asporin ISO (PMID:19589127) RGD PMID:19589127 NCBI chr17:14,655,958...14,681,355
Ensembl chr17:14,656,009...14,679,409
JBrowse link
G Atf4 activating transcription factor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:3040115|PMID:15109498)
UniProt
RGD
PMID:15109498 GO_REF:0000024, MGI:MGI:3040115 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Axin2 axin 2 ISO
IEA
MGI:MGI:3579503 (MGI:MGI:4818263|PMID:19623616)
GO_REF:0000107
RGD
Ensembl
PMID:19623616 GO_REF:0000107, MGI:MGI:4818263 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO MGI:MGI:101948|MGI:MGI:1922667 (MGI:MGI:3528531|PMID:15657444), (MGI:MGI:3850932|PMID:19213727) RGD PMID:15657444, PMID:19213727 MGI:MGI:3528531, MGI:MGI:3850932 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:19113921) RGD PMID:19113921 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Clec3b C-type lectin domain family 3, member B ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:7589422), (PMID:7798325)
UniProt
RGD
PMID:7589422, PMID:7798325, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:132,241,016...132,248,066
Ensembl chr 8:132,241,134...132,246,694
JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO MGI:MGI:1856327 (MGI:MGI:5468210|PMID:22910579) RGD PMID:22910579 MGI:MGI:5468210 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
(MGI:MGI:6100855|PMID:27151399)
GO_REF:0000107
RGD
Ensembl
PMID:27151399 GO_REF:0000107, MGI:MGI:6100855 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO MGI:MGI:3526402 (MGI:MGI:5780798|PMID:21308776) RGD PMID:21308776 MGI:MGI:5780798 NCBI chr 6:133,576,513...133,583,751
Ensembl chr 6:133,552,821...133,583,751
JBrowse link
G Duox2 dual oxidase 2 ISO
IEA
MGI:MGI:3712359 (MGI:MGI:3712355|PMID:17440044)
GO_REF:0000107
RGD
Ensembl
PMID:17440044 GO_REF:0000107, MGI:MGI:3712355 NCBI chr 3:114,218,187...114,237,808
Ensembl chr 3:114,218,193...114,235,933
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO MGI:MGI:2183829 (MGI:MGI:2179907|PMID:11997520) RGD PMID:11997520 MGI:MGI:2179907 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:MGI:2183949 (MGI:MGI:3692802|PMID:17020410) RGD PMID:17020410 MGI:MGI:3692802 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 IMP PMID:21572392 UniProt PMID:21572392 RGD:8554771 NCBI chr 1:266,075,782...266,078,023
Ensembl chr 1:266,075,782...266,078,023
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:3044427 (MGI:MGI:3043470|PMID:12756187) RGD PMID:12756187 MGI:MGI:3043470 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:MGI:4457789|PMID:20582225) RGD PMID:20582225 MGI:MGI:4457789 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase ISO MGI:MGI:3665439 (MGI:MGI:3663851|PMID:16964445) RGD PMID:16964445 MGI:MGI:3663851 NCBI chr 5:151,172,189...151,199,746
Ensembl chr 5:151,172,206...151,199,745
JBrowse link
G Gla galactosidase, alpha NOT ISO MGI:MGI:1861794 (MGI:MGI:3692334|PMID:16697974) RGD PMID:16697974 MGI:MGI:3692334 NCBI chr  X:105,405,915...105,417,331
Ensembl chr  X:105,406,792...105,417,323
JBrowse link
G Gpc3 glypican 3 ISO
IEA
MGI:MGI:2159355 (MGI:MGI:3612305|PMID:15936336)
GO_REF:0000107
RGD
Ensembl
PMID:15936336 GO_REF:0000107, MGI:MGI:3612305 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Gpnmb glycoprotein nmb IEP RGD PMID:11746512 RGD:632991 NCBI chr 4:78,694,447...78,715,685
Ensembl chr 4:78,694,447...78,715,683
JBrowse link
G Ibsp integrin-binding sialoprotein ISO
IBA
IEA
MGI:MGI:3796255 (MGI:MGI:5614132|PMID:25464126)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:25464126, PMID:21873635 GO_REF:0000107, MGI:MGI:5614132, RGD:13792537 NCBI chr14:6,801,200...6,813,987
Ensembl chr14:6,801,204...6,813,945
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase ISO MGI:MGI:1890508 (MGI:MGI:5500993|PMID:23686339) RGD PMID:23686339 MGI:MGI:5500993 NCBI chr 5:169,475,270...169,482,031
Ensembl chr 5:169,475,270...169,482,030
JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 ISO
IBA
(PMID:24519609)
PMID:21873635
(MGI:MGI:4359156|PMID:18442316), (MGI:MGI:5607401|PMID:20838829)
RGD PMID:18442316, PMID:20838829, PMID:24519609, PMID:21873635 MGI:MGI:4359156, MGI:MGI:5607401, RGD:13792537 NCBI chr 1:213,743,331...213,749,879
Ensembl chr 1:213,744,796...213,745,748
JBrowse link
G Klf10 Kruppel-like factor 10 ISO MGI:MGI:3530069 (MGI:MGI:3528531|PMID:15657444) RGD PMID:15657444 MGI:MGI:3528531 NCBI chr 7:77,156,010...77,162,096
Ensembl chr 7:77,156,006...77,162,148
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO
ISS
(MGI:MGI:4360132|PMID:19605502)
GO_REF:0000024
RGD
UniProt
PMID:19605502 GO_REF:0000024, MGI:MGI:4360132 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119
JBrowse link
G Lox lysyl oxidase ISO MGI:MGI:3610732 (MGI:MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:MGI:5603515 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEA
ISO
GO_REF:0000107
MGI:MGI:3521852 (MGI:MGI:3513736|PMID:15563592), (MGI:MGI:3771509|PMID:17987127)
Ensembl
RGD
PMID:15563592, PMID:17987127 GO_REF:0000107, MGI:MGI:3513736, MGI:MGI:3771509 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 ISO MGI:MGI:5319219 (MGI:MGI:5317250|PMID:21406566) RGD PMID:21406566 MGI:MGI:5317250 NCBI chr 7:98,820,799...98,960,878
Ensembl chr 7:98,820,812...98,960,837
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked ISO MGI:MGI:1857312 (MGI:MGI:3851320|PMID:15843468) RGD PMID:15843468 MGI:MGI:3851320 NCBI chr  X:40,460,047...40,717,982
Ensembl chr  X:40,460,047...40,717,982
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO MGI:MGI:5014347 (MGI:MGI:5013998|PMID:21553379) RGD PMID:21553379 MGI:MGI:5013998 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP PMID:18519738 MGI PMID:18519738 RGD:8554572 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Pth1r parathyroid hormone 1 receptor ISO MGI:MGI:2154519 (MGI:MGI:2153596|PMID:11606467), (MGI:MGI:3624906|PMID:9832460) RGD PMID:9832460, PMID:11606467 MGI:MGI:2153596, MGI:MGI:3624906 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Pthlh parathyroid hormone-like hormone NOT ISO MGI:MGI:2154515 (MGI:MGI:2153596|PMID:11606467) RGD PMID:11606467 MGI:MGI:2153596 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Ptn pleiotrophin ISO (MGI:MGI:2429445|PMID:12413943) RGD PMID:12413943 MGI:MGI:2429445 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 IEP RGD PMID:23337931 RGD:11537369 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Rspo2 R-spondin 2 ISO MGI:MGI:101948|MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 7:81,919,911...82,059,659
Ensembl chr 7:81,924,050...82,059,789
JBrowse link
G Sbds SBDS, ribosome maturation factor ISO (PMID:17920346) RGD PMID:17920346 NCBI chr12:29,921,443...29,930,602
Ensembl chr12:29,921,443...29,930,600
JBrowse link
G Sbno2 strawberry notch homolog 2 ISO MGI:MGI:5551983 (MGI:MGI:5522615|PMID:23980096) RGD PMID:23980096 MGI:MGI:5522615 NCBI chr 7:12,471,805...12,515,700
Ensembl chr 7:12,471,824...12,518,654
JBrowse link
G Slc24a3 solute carrier family 24 member 3 ISO (MGI:MGI:6104227|PMID:28602864) RGD PMID:28602864 MGI:MGI:6104227 NCBI chr 3:139,333,942...139,835,728
Ensembl chr 3:139,695,028...139,833,967
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 IEA
ISO
GO_REF:0000107
MGI:MGI:1856877 (MGI:MGI:5293259|PMID:21788370), (MGI:MGI:5584216|PMID:24585429)
Ensembl
RGD
PMID:21788370, PMID:24585429 GO_REF:0000107, MGI:MGI:5293259, MGI:MGI:5584216 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:MGI:101948 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tmem38b transmembrane protein 38B ISO MGI:MGI:1921416 (MGI:MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:MGI:6141091 NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:1888594 (MGI:MGI:5500993|PMID:23686339) RGD PMID:23686339 MGI:MGI:5500993 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 ISO MGI:MGI:4127698 (MGI:MGI:5486117|PMID:22936354) RGD PMID:22936354 MGI:MGI:5486117 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO
ISS
(PMID:16433617)
GO_REF:0000024
RGD
UniProt
PMID:16433617 GO_REF:0000024 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Ccdc154 coiled-coil domain containing 154 ISO MGI:MGI:5702426 (MGI:MGI:5697796|PMID:20121924) RGD PMID:20121924 MGI:MGI:5697796 NCBI chr10:14,518,240...14,529,920
Ensembl chr10:14,519,164...14,528,277
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:MGI:3689350|MGI:MGI:5818514 (MGI:MGI:5807019|PMID:26996322) RGD PMID:26996322 MGI:MGI:5807019 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:16433617)
GO_REF:0000107
RGD
Ensembl
PMID:16433617 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Lep leptin IDA RGD PMID:21353474 RGD:5128507 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 ISO
IBA
MGI:MGI:5049904 (MGI:MGI:5008224|PMID:21272676)
PMID:21873635
RGD PMID:21272676, PMID:21873635 MGI:MGI:5008224, RGD:13792537 NCBI chr10:83,635,557...83,643,862
Ensembl chr10:83,636,518...83,643,859
JBrowse link
G Snx10 sorting nexin 10 ISO MGI:MGI:5690193 (MGI:MGI:5688814|PMID:25811986) RGD PMID:25811986 MGI:MGI:5688814 NCBI chr 4:81,311,490...81,375,248
Ensembl chr 4:81,311,490...81,374,158
JBrowse link
negative regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahsg alpha-2-HS-glycoprotein IMP
ISS
ISO
GO_REF:0000024
(MGI:MGI:3687916|PMID:12556469)
UniProt
RGD
PMID:12556469, PMID:8702833 GO_REF:0000024, MGI:MGI:3687916, RGD:1626074 NCBI chr11:81,711,269...81,717,594 JBrowse link
G Bcor BCL6 co-repressor ISO (PMID:19578371) RGD PMID:19578371 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO (PMID:21403648) RGD PMID:21403648 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccr1 C-C motif chemokine receptor 1 ISO (PMID:21403648) RGD PMID:21403648 NCBI chr 8:132,996,646...133,002,201
Ensembl chr 8:132,996,649...133,002,201
JBrowse link
G Ecm1 extracellular matrix protein 1 ISO
ISS
(PMID:11165938)
GO_REF:0000024
RGD
UniProt
PMID:11165938 GO_REF:0000024 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:5607146|PMID:25479107), (MGI:MGI:6220772|PMID:30111653), (MGI:MGI:6294341|PMID:22510396)
UniProt
RGD
PMID:22510396, PMID:25479107, PMID:30111653 GO_REF:0000024, MGI:MGI:5607146, MGI:MGI:6220772, MGI:MGI:6294341 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO (PMID:18282132) RGD PMID:18282132 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Gata1 GATA binding protein 1 ISO MGI:MGI:2177586 (MGI:MGI:3653541|PMID:15005853) RGD PMID:15005853 MGI:MGI:3653541 NCBI chr  X:15,273,937...15,281,759
Ensembl chr  X:15,378,789...15,382,066
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:1857719 (MGI:MGI:3777866|PMID:17181398)
GO_REF:0000107
RGD
Ensembl
PMID:17181398 GO_REF:0000107, MGI:MGI:3777866 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 ISO MGI:MGI:2180017 (MGI:MGI:2178869|PMID:11790802) RGD PMID:11790802 MGI:MGI:2178869 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Mepe matrix extracellular phosphoglycoprotein ISO MGI:MGI:2448895 (MGI:MGI:2448336|PMID:12421822), (MGI:MGI:3851320|PMID:15843468), (MGI:MGI:5431257|PMID:22766095) RGD PMID:12421822, PMID:15843468, PMID:22766095 MGI:MGI:2448336, MGI:MGI:3851320, MGI:MGI:5431257 NCBI chr14:6,782,011...6,793,561
Ensembl chr14:6,782,012...6,793,558
JBrowse link
G Nfe2 nuclear factor, erythroid 2 ISO MGI:MGI:1857224 (MGI:MGI:3653541|PMID:15005853) RGD PMID:15005853 MGI:MGI:3653541 NCBI chr 7:144,872,739...144,880,092
Ensembl chr 7:144,872,747...144,880,092
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO
ISS
(MGI:MGI:3713957|PMID:17537919)
GO_REF:0000024
RGD
UniProt
PMID:17537919 GO_REF:0000024, MGI:MGI:3713957 NCBI chr15:42,827,306...42,947,796
Ensembl chr15:42,827,310...42,947,656
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2158693 (MGI:MGI:2135696|PMID:11371614) RGD PMID:11371614 MGI:MGI:2135696 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Srgn serglycin ISO
IBA
ISS
(PMID:16870619)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16870619, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:32,120,317...32,158,071
Ensembl chr20:32,120,320...32,139,789
JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:101,293,300...101,323,484
Ensembl chr 1:101,293,409...101,323,960
JBrowse link
negative regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Pth parathyroid hormone IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Rflna refilin A ISO
IBA
MGI:MGI:1923816 (MGI:MGI:5570967|PMID:24436304)
PMID:21873635
RGD PMID:24436304, PMID:21873635 MGI:MGI:5570967, RGD:13792537 NCBI chr12:37,038,732...37,047,628
Ensembl chr12:37,038,733...37,047,628
JBrowse link
G Rflnb refilin B ISO
IBA
MGI:MGI:1920371 (MGI:MGI:5570967|PMID:24436304)
PMID:21873635
RGD PMID:24436304, PMID:21873635 MGI:MGI:5570967, RGD:13792537 NCBI chr10:64,196,103...64,202,380
Ensembl chr10:64,196,127...64,202,380
JBrowse link
positive regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:MGI:6211994|PMID:22419726) RGD PMID:22419726 MGI:MGI:6211994 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Adrb2 adrenoceptor beta 2 ISO
IEA
MGI:MGI:1859675 (MGI:MGI:3575849|PMID:15724149)
GO_REF:0000107
RGD
Ensembl
PMID:15724149 GO_REF:0000107, MGI:MGI:3575849 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6393219|PMID:24906289)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24906289 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6393219 NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
JBrowse link
G Ano6 anoctamin 6 ISO (PMID:25589784)
(MGI:MGI:5634871|PMID:25589784)
RGD PMID:25589784 MGI:MGI:5634871 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:5780494|PMID:26392310)
UniProt
RGD
PMID:26392310 GO_REF:0000024, MGI:MGI:5780494 NCBI chr 7:41,114,606...41,223,138
Ensembl chr 7:41,114,697...41,220,579
JBrowse link
G Atraid all-trans retinoic acid-induced differentiation factor ISO (PMID:21723284) RGD PMID:21723284 NCBI chr 6:26,680,628...26,685,185
Ensembl chr 6:26,680,598...26,685,235
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:5009350|PMID:20675382)
(PMID:18436533), (PMID:20576608)
UniProt
RGD
PMID:18436533, PMID:20576608, PMID:20675382 GO_REF:0000024, MGI:MGI:5009350 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 IDA
ISO
ISS
IEA
(PMID:14749725), (PMID:18436533)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14749725, PMID:18436533, PMID:15352071 GO_REF:0000024, GO_REF:0000107, RGD:9068399 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (PMID:18436533) RGD PMID:18436533 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Ccn1 cellular communication network factor 1 IEA
ISO
GO_REF:0000107
(PMID:20675382)
Ensembl
RGD
PMID:20675382 GO_REF:0000107 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Cd276 Cd276 molecule ISO MGI:MGI:3033707 (MGI:MGI:3052626|PMID:15317945) RGD PMID:15317945 MGI:MGI:3052626 NCBI chr 8:63,312,060...63,350,411
Ensembl chr 8:63,318,019...63,350,269
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO (MGI:MGI:3715055|PMID:17369251), (MGI:MGI:5427766|PMID:22615579) RGD PMID:17369251, PMID:22615579 MGI:MGI:3715055, MGI:MGI:5427766 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Fbn2 fibrillin 2 ISO (MGI:MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:MGI:4836762 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:2135670 (MGI:MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:MGI:4437389 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Fzd9 frizzled class receptor 9 ISO
ISS
(MGI:MGI:4943600|PMID:21402791)
GO_REF:0000024
RGD
UniProt
PMID:21402791 GO_REF:0000024, MGI:MGI:4943600 NCBI chr12:24,473,981...24,476,295
Ensembl chr12:24,473,981...24,476,295
JBrowse link
G Gpm6b glycoprotein m6b IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21638316)
Ensembl
UniProt
RGD
PMID:21638316 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:29,604,607...29,751,174
Ensembl chr  X:29,607,075...29,648,403
JBrowse link
G Isg15 ISG15 ubiquitin-like modifier ISO (MGI:MGI:4943600|PMID:21402791) RGD PMID:21402791 MGI:MGI:4943600 NCBI chr 5:173,624,862...173,629,124
Ensembl chr 5:173,624,310...173,626,248
JBrowse link
G Kl Klotho IEA
ISO
GO_REF:0000107
(PMID:12110410)
Ensembl
RGD
PMID:12110410 GO_REF:0000107 NCBI chr12:942,974...987,206
Ensembl chr12:943,006...987,551
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5285459|PMID:21652706)
Ensembl
UniProt
RGD
PMID:21652706 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5285459 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 ISO MGI:MGI:5007248 (MGI:MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:MGI:5008683 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Nell1 neural EGFL like 1 ISO
ISS
(PMID:21723284)
GO_REF:0000024
RGD
UniProt
PMID:21723284 GO_REF:0000024 NCBI chr 1:105,348,577...106,218,970
Ensembl chr 1:105,349,069...106,218,958
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO MGI:MGI:2386080 (MGI:MGI:2667237|PMID:12677010), (MGI:MGI:3797675|PMID:18519738) RGD PMID:12677010, PMID:18519738 MGI:MGI:2667237, MGI:MGI:3797675 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO (MGI:MGI:3813934|PMID:19097194) RGD PMID:19097194 MGI:MGI:3813934 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Pla2g4a phospholipase A2 group IVA IEP RGD PMID:10807497 RGD:1642474 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Pth parathyroid hormone IDA
ISO
(PMID:17696759) RGD PMID:17696759, PMID:15758479, PMID:22445539 RGD:7207452, RGD:7242906 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Ptn pleiotrophin ISS
ISO
GO_REF:0000024
(MGI:MGI:6294181|PMID:19442624)
UniProt
RGD
PMID:19442624 GO_REF:0000024, MGI:MGI:6294181 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Slc8a1 solute carrier family 8 member A1 ISO (PMID:25589784) RGD PMID:25589784 NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
JBrowse link
G Smad3 SMAD family member 3 IDA rat gene expressed in mouse osteoblastic cell line MC3T3-E1; TGF-beta down-regulates this activity RGD PMID:12096832 RGD:727387 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
ISS
(PMID:19578371)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19578371 GO_REF:0000024, GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:17401695)
GO_REF:0000024
RGD
AgBase
PMID:17401695 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO
ISS
(PMID:17401695)
GO_REF:0000024
RGD
AgBase
PMID:17401695 GO_REF:0000024 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tmem119 transmembrane protein 119 ISO
IBA
(PMID:20025746)
PMID:21873635
(MGI:MGI:4418582|PMID:20025746), (MGI:MGI:5700277|PMID:26207632)
RGD PMID:20025746, PMID:26207632, PMID:21873635 MGI:MGI:4418582, MGI:MGI:5700277, RGD:13792537 NCBI chr12:48,598,498...48,605,704
Ensembl chr12:48,598,647...48,605,704
JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:MGI:3574150 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
G Wnt4 Wnt family member 4 ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 ISO (MGI:MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:MGI:5291888 NCBI chr 1:220,120,532...220,136,460
Ensembl chr 1:220,120,533...220,136,470
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 ISO MGI:MGI:3840841 (MGI:MGI:5514358|PMID:21490954) RGD PMID:21490954 MGI:MGI:5514358 NCBI chr 6:27,835,346...27,919,285
Ensembl chr 6:27,887,797...27,915,563
JBrowse link
regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankh ANKH inorganic pyrophosphate transport regulator TAS
ISO
ISS
IEA
MGI:MGI:1856651 (MGI:MGI:1860991|PMID:10894769), (MGI:MGI:55055|PMID:7276519)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:7276519, PMID:10894769, PMID:12861042 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1860991, MGI:MGI:55055, RGD:634632 NCBI chr 2:80,131,563...80,256,948
Ensembl chr 2:80,131,563...80,256,954
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Bmp2k BMP-2 inducible kinase ISO
IBA
(MGI:MGI:2153232|PMID:11500515)
PMID:21873635
RGD PMID:11500515, PMID:21873635 MGI:MGI:2153232, RGD:13792537 NCBI chr14:14,126,086...14,226,823
Ensembl chr14:14,129,725...14,192,048
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
(MGI:MGI:5318950|PMID:21350216)
GO_REF:0000107
RGD
Ensembl
PMID:21350216 GO_REF:0000107, MGI:MGI:5318950 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:9415400) RGD PMID:9415400 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (PMID:20564243) RGD PMID:20564243 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 TAS RGD PMID:8509401 RGD:728616 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link
G Ecm1 extracellular matrix protein 1 ISO
IBA
(MGI:MGI:4452294|PMID:20138147)
PMID:21873635
RGD PMID:20138147, PMID:21873635 MGI:MGI:4452294, RGD:13792537 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO MGI:MGI:3512143 (MGI:MGI:3510566|PMID:15579309) RGD PMID:15579309 MGI:MGI:3510566 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:MGI:2445468|MGI:MGI:3776013 (MGI:MGI:5317265|PMID:21346198) RGD PMID:21346198 MGI:MGI:5317265 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G LOC103690116 osteomodulin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:14,635,588...14,646,368
Ensembl chr17:14,635,184...14,637,832
Ensembl chr17:14,635,184...14,637,832
JBrowse link
G Matn1 matrilin 1 ISO MGI:MGI:2153042|MGI:MGI:3663272 (MGI:MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:MGI:3655339 NCBI chr 5:149,077,412...149,086,957
Ensembl chr 5:149,077,412...149,086,957
JBrowse link
G Mgp matrix Gla protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:170,856,783...170,860,105
Ensembl chr 4:170,856,751...170,860,225
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor ISO
IEA
(MGI:MGI:4818844|PMID:20616007)
GO_REF:0000107
RGD
Ensembl
PMID:20616007 GO_REF:0000107, MGI:MGI:4818844 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Omd osteomodulin NAS
IEA
GO_REF:0000002 InterPro PMID:10607915 GO_REF:0000002, RGD:633418 NCBI chr17:15,476,100...15,484,324
Ensembl chr17:15,475,710...15,484,269
JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 ISO
ISS
(MGI:MGI:3839226|PMID:19204730)
GO_REF:0000024
RGD
UniProt
PMID:19204730 GO_REF:0000024, MGI:MGI:3839226 NCBI chr 2:218,654,406...218,658,761
Ensembl chr 2:218,654,554...218,658,761
JBrowse link
G Sgms2 sphingomyelin synthase 2 ISS
ISO
IEA
GO_REF:0000024
(PMID:30779713)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30779713 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO MGI:MGI:1890508 (MGI:MGI:5913114|PMID:23695662) RGD PMID:23695662 MGI:MGI:5913114 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:19597909) RGD PMID:19597909 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Txlng taxilin gamma ISO (MGI:MGI:3587454|PMID:15911876), (MGI:MGI:5306578|PMID:19016261) RGD PMID:15911876, PMID:19016261 MGI:MGI:3587454, MGI:MGI:5306578 NCBI chr  X:33,599,643...33,648,525
Ensembl chr  X:33,599,671...33,646,444
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:1099440 (MGI:MGI:5913114|PMID:23695662) RGD PMID:23695662 MGI:MGI:5913114 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    multicellular organismal process 9068
      ossification 432
        bone mineralization 128
          bone mineralization involved in bone maturation + 14
          negative regulation of bone mineralization + 20
          phosphatidylserine exposure on osteoblast involved in bone mineralization 0
          positive regulation of bone mineralization + 45
          regulation of bone mineralization + 83
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              biomineral tissue development 171
                bone mineralization 128
                  bone mineralization involved in bone maturation + 14
                  negative regulation of bone mineralization + 20
                  phosphatidylserine exposure on osteoblast involved in bone mineralization 0
                  positive regulation of bone mineralization + 45
                  regulation of bone mineralization + 83
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.