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ONTOLOGY REPORT - ANNOTATIONS


Term:cortical cytoskeleton organization
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Accession:GO:0030865 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures in the cell cortex, i.e. just beneath the plasma membrane.
Synonyms:exact_synonym: cortical cytoskeleton organisation
 related_synonym: cortical cytoskeleton organization and biogenesis


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cortical cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:76,056,585...76,079,755
Ensembl chr 6:76,056,499...76,079,664
JBrowse link
G Rac1 Rac family small GTPase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
G Rac2 Rac family small GTPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:119,769,708...119,797,111
Ensembl chr 7:119,783,849...119,797,098
JBrowse link
G Rac3 Rac family small GTPase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,903,920...109,906,596
Ensembl chr10:109,904,259...109,906,232
JBrowse link
G Rhoa ras homolog family member A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G Rhob ras homolog family member B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:33,689,127...33,691,301
Ensembl chr 6:33,689,127...33,691,301
JBrowse link
G Rhobtb1 Rho-related BTB domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:20,638,579...20,715,437
Ensembl chr20:20,638,579...20,713,128
JBrowse link
G Rhobtb2 Rho-related BTB domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:51,465,148...51,485,562
Ensembl chr15:51,465,148...51,485,692
JBrowse link
G Rhobtb3 Rho-related BTB domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:2,627,655...2,683,305
Ensembl chr 2:2,627,393...2,683,116
JBrowse link
G Rhoc ras homolog family member C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:207,271,692...207,278,010
Ensembl chr 2:207,271,853...207,279,314
JBrowse link
G Rhod ras homolog family member D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:219,668,352...219,682,287
Ensembl chr 1:219,668,352...219,682,287
JBrowse link
G Rhof ras homolog family member F, filopodia associated IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:38,879,763...38,894,095
Ensembl chr12:38,880,377...38,894,582
JBrowse link
G Rhog ras homolog family member G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:167,336,147...167,347,720
Ensembl chr 1:167,335,248...167,347,671
JBrowse link
G Rhoh ras homolog family member H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:43,961,756...43,992,587
Ensembl chr14:43,961,756...43,992,587
JBrowse link
G Rnd1 Rho family GTPase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,349,138...140,356,209
Ensembl chr 7:140,349,138...140,356,209
JBrowse link
G Rnd2 Rho family GTPase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,376,530...89,380,101
Ensembl chr10:89,376,530...89,380,101
JBrowse link
G Rnd3 Rho family GTPase 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:36,643,374...36,660,727
Ensembl chr 3:36,642,587...36,660,758
JBrowse link
G RSA-14-44 RSA-14-44 protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:96,831,880...96,833,252
Ensembl chr 4:96,831,880...96,833,251
JBrowse link
G Septin7 septin 7 ISO (MGI:5306816|PMID:22232702) RGD PMID:22232702 MGI:5306816 NCBI chr 8:26,412,910...26,476,615
Ensembl chr 8:26,413,233...26,476,611
JBrowse link
G Wdr1 WD repeat domain 1 ISO (MGI:3784948|PMID:17515402) RGD PMID:17515402 MGI:3784948 NCBI chr14:76,990,014...77,023,739
Ensembl chr14:76,989,919...77,023,726
JBrowse link
actomyosin contractile ring assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anln anillin, actin binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:23,336,455...23,397,122
Ensembl chr 8:23,337,621...23,390,773
JBrowse link
G Anlnl1 anillin, actin binding protein-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:66,542,420...66,553,118
Ensembl chr17:66,548,818...66,551,947
JBrowse link
G Kif23 kinesin family member 23 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:66,866,043...66,893,241
Ensembl chr 8:66,866,082...66,893,196
JBrowse link
G LOC103692165 rhotekin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:113,967,384...113,984,636
Ensembl chr 4:114,835,064...114,850,701
Ensembl chr 4:114,835,064...114,850,701
JBrowse link
G Pdcd6ip programmed cell death 6 interacting protein ISS
ISO
IEA
GO_REF:0000024
(MGI:5819325|PMID:27336173)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27336173 GO_REF:0000024, GO_REF:0000107, MGI:5819325 NCBI chr 8:121,916,233...121,973,145
Ensembl chr 8:121,916,185...121,973,125
JBrowse link
G Racgap1 Rac GTPase-activating protein 1 ISO (PMID:16129829) RGD PMID:16129829 NCBI chr 7:141,277,303...141,308,849
Ensembl chr 7:141,277,312...141,307,233
JBrowse link
G Rtkn rhotekin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:114,833,453...114,850,705
Ensembl chr 4:114,835,064...114,850,701
JBrowse link
cortical actin cytoskeleton organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap11 A-kinase anchoring protein 11 ISO MGI:5751858 (MGI:5792167|PMID:27402760) RGD PMID:27402760 MGI:5792167 NCBI chr15:60,722,138...60,766,673
Ensembl chr15:60,722,160...60,766,579
JBrowse link
G Arf6 ADP-ribosylation factor 6 ISO (PMID:10036235), (PMID:10913182) RGD PMID:10036235, PMID:10913182 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Calr calreticulin ISO (MGI:3051936|PMID:15136153) RGD PMID:15136153 MGI:3051936 NCBI chr19:25,956,771...25,961,666
Ensembl chr19:25,956,771...25,961,666
JBrowse link
G Cavin3 caveolae associated protein 3 ISO MGI:5518819 (MGI:5518817|PMID:24069528) RGD PMID:24069528 MGI:5518817 NCBI chr 1:170,317,099...170,318,688
Ensembl chr 1:170,317,113...170,318,935
JBrowse link
G Cdk5 cyclin-dependent kinase 5 IMP RGD PMID:15331630 RGD:1598417 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:14699157)
Ensembl
UniProt
RGD
PMID:14699157 GO_REF:0000024, GO_REF:0000107 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Ehd2 EH-domain containing 2 ISO (MGI:3056883|PMID:15247266) RGD PMID:15247266 MGI:3056883 NCBI chr 1:77,847,599...77,865,870
Ensembl chr 1:77,847,600...77,865,870
JBrowse link
G Epb41 erythrocyte membrane protein band 4.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:150,081,727...150,243,186
Ensembl chr 5:150,084,611...150,167,077
JBrowse link
G Epb41l1 erythrocyte membrane protein band 4.1-like 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:152,492,725...152,622,047
Ensembl chr 3:152,552,822...152,619,722
JBrowse link
G Epb41l2 erythrocyte membrane protein band 4.1-like 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:20,881,820...21,067,713
Ensembl chr 1:20,893,995...20,962,526
JBrowse link
G Epb41l3 erythrocyte membrane protein band 4.1-like 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:117,314,935...117,666,408
Ensembl chr 9:117,538,009...117,666,410
JBrowse link
G Fhod1 formin homology 2 domain containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,284,923...37,303,855
Ensembl chr19:37,284,923...37,303,788
JBrowse link
G Fhod3 formin homology 2 domain containing 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:16,650,786...17,332,209
Ensembl chr18:16,650,806...17,332,210
JBrowse link
G Fmnl1 formin-like 1 ISO
IBA
(PMID:21834987)
PMID:21873635
RGD PMID:21834987, PMID:21873635 RGD:13792537 NCBI chr10:91,253,757...91,281,422
Ensembl chr10:91,254,058...91,281,418
JBrowse link
G Fmnl2 formin-like 2 ISO
IBA
(PMID:21834987)
PMID:21873635
RGD PMID:21834987, PMID:21873635 RGD:13792537 NCBI chr 3:38,400,409...38,677,637
Ensembl chr 3:38,559,914...38,675,878
JBrowse link
G Fmnl3 formin-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,981,801...141,033,318
Ensembl chr 7:140,983,342...141,001,993
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta IEA
ISO
GO_REF:0000107
(PMID:25816133)
Ensembl
RGD
PMID:25816133 GO_REF:0000107 NCBI chr16:74,177,233...74,230,809
Ensembl chr16:74,177,215...74,230,815
JBrowse link
G Llgl1 LLGL scribble cell polarity complex component 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:7542763)
Ensembl
RGD
PMID:7542763, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:46,940,873...46,955,524
Ensembl chr10:46,940,965...46,954,674
JBrowse link
G Llgl2 LLGL scribble cell polarity complex component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,367,826...104,403,726
Ensembl chr10:104,368,247...104,403,724
JBrowse link
G LOC100911769 band 4.1-like protein 1-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:153,842,324...153,893,908
Ensembl chr 3:153,843,206...153,893,847
JBrowse link
G Nckap1 NCK-associated protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nckap1l NCK associated protein 1 like ISO
IBA
ISS
(PMID:16417406)
(MGI:5502518|PMID:23424621)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16417406, PMID:23424621, PMID:21873635 GO_REF:0000024, MGI:5502518, RGD:13792537 NCBI chr 7:145,068,239...145,113,507
Ensembl chr 7:145,068,286...145,113,507
JBrowse link
G Plek pleckstrin ISO (PMID:10497244) RGD PMID:10497244 NCBI chr14:100,151,518...100,184,192
Ensembl chr14:100,151,210...100,217,913
JBrowse link
G Rab13 RAB13, member RAS oncogene family IMP PMID:23419316 UniProt PMID:23419316 RGD:8554106 NCBI chr 2:189,581,209...189,586,358
Ensembl chr 2:189,581,644...189,586,338
JBrowse link
G Rhoq ras homolog family member Q ISO
IBA
(PMID:11821390)
(MGI:2178001|PMID:11821390)
PMID:21873635
RGD PMID:11821390, PMID:21873635 MGI:2178001, RGD:13792537 NCBI chr 6:10,533,151...10,568,582
Ensembl chr 6:10,533,151...10,568,581
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
UniProtKB:O75116 (PMID:25816133)
Ensembl
RGD
PMID:25816133, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
UniProtKB:Q13464 (PMID:25816133)
Ensembl
RGD
PMID:25816133, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Strip1 striatin interacting protein 1 ISO (PMID:21834987) RGD PMID:21834987 NCBI chr 2:210,393,708...210,413,757
Ensembl chr 2:210,393,689...210,413,985
JBrowse link
G Tln1 talin 1 ISO (MGI:2667760|PMID:12867986) RGD PMID:12867986 MGI:2667760 NCBI chr 5:59,033,635...59,063,592
Ensembl chr 5:59,033,636...59,063,592
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:25816133) RGD PMID:25816133 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
cortical microtubule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg1 discs large MAGUK scaffold protein 1 IEA
ISO
GO_REF:0000107
(PMID:20551903)
Ensembl
RGD
PMID:20551903 GO_REF:0000107 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Ezr ezrin ISO (PMID:20551903) RGD PMID:20551903 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 ISO (MGI:5293247|PMID:21844209) RGD PMID:21844209 MGI:5293247 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 IDA PMID:20657843 BHF-UCL PMID:20657843 RGD:8553293 NCBI chr12:47,698,915...47,737,902
Ensembl chr12:47,698,947...47,737,902
JBrowse link
cytoskeletal matrix organization at active zone term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 IMP
ISO
PMID:19628693
(MGI:4355770|PMID:19628693)
RGD PMID:19628693, PMID:19628693 MGI:4355770, RGD:8554760 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
regulation of cytokinesis, actomyosin contractile ring assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ect2 epithelial cell transforming 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:112,769,385...112,831,476
Ensembl chr 2:112,769,385...112,831,476
JBrowse link
terminal web assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ezr ezrin ISO UniProtKB:Q3V0K9|UniProtKB:Q62468 (MGI:5621262|PMID:22114352) RGD PMID:22114352 MGI:5621262 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Pls1 plastin 1 ISO MGI:5609592|UniProtKB:P26040|UniProtKB:Q62468 (MGI:5609425|PMID:19321664), (MGI:5621262|PMID:22114352) RGD PMID:19321664, PMID:22114352 MGI:5609425, MGI:5621262 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913
JBrowse link
G Vil1 villin 1 ISO UniProtKB:P26040|UniProtKB:Q3V0K9 (MGI:5621262|PMID:22114352) RGD PMID:22114352 MGI:5621262 NCBI chr 9:81,689,802...81,717,623
Ensembl chr 9:81,689,802...81,717,621
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          organelle organization 4101
            cytoskeleton organization 1459
              cortical cytoskeleton organization 64
                cortical actin cytoskeleton organization + 41
                cortical microtubule organization 4
                cytoskeletal matrix organization at active zone 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.