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ONTOLOGY REPORT - ANNOTATIONS


Term:rough endoplasmic reticulum membrane
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Accession:GO:0030867 term browser browse the term
Definition:The lipid bilayer surrounding the rough endoplasmic reticulum.
Synonyms:exact_synonym: RER membrane;   rough ER membrane
 xref: NIF_Subcellular:sao3089754107


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rough endoplasmic reticulum membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldob aldolase, fructose-bisphosphate B JBrowse link 5 64,805,772 64,818,813 RGD:2313431
G Ccdc47 coiled-coil domain containing 47 JBrowse link 10 94,388,425 94,406,949 RGD:1600115
G Maco1 macoilin 1 JBrowse link 5 153,122,780 153,184,940 RGD:1624291
RGD:13792537
RGD:1600115
G Nat8l N-acetyltransferase 8-like JBrowse link 14 82,041,616 82,048,251 RGD:1600115
G Pi4kb phosphatidylinositol 4-kinase beta JBrowse link 2 196,139,724 196,172,055 RGD:1600115
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 JBrowse link 5 164,720,629 164,747,071 RGD:1600115
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 JBrowse link 8 99,977,334 100,059,736 RGD:1600115
G Rho rhodopsin JBrowse link 4 147,832,136 147,837,298 RGD:6893558
G Suco SUN domain containing ossification factor JBrowse link 13 79,736,485 79,801,133 RGD:1600115
G Tmem97 transmembrane protein 97 JBrowse link 10 65,811,455 65,820,538 RGD:1600115
G Uba1 ubiquitin-like modifier activating enzyme 1 JBrowse link X 1,723,135 1,745,147 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1600115
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
RGD:1600115
G Gnrh1 gonadotropin releasing hormone 1 JBrowse link 15 44,441,856 44,446,064 RGD:9685146
G LOC100360508 ribosomal protein S26-like JBrowse link 13 45,079,857 45,080,277 RGD:1600115
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase JBrowse link 6 91,476,698 91,479,187 RGD:1624291
G Rpl10 ribosomal protein L10 JBrowse link X 156,438,251 156,440,461 RGD:1624291
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
G Rpl22 ribosomal protein L22 JBrowse link 5 169,506,150 169,512,875 RGD:1624291
G Rpl23 ribosomal protein L23 JBrowse link 10 85,721,398 85,725,359 RGD:1624291
G Rpl27 ribosomal protein L27 JBrowse link 10 89,352,864 89,356,563 RGD:1600115
RGD:1624291
G Rpl29 ribosomal protein L29 JBrowse link 8 115,131,228 115,133,401 RGD:1624291
G Rpl31 ribosomal protein L31 JBrowse link 9 46,086,959 46,090,444 RGD:1624291
G Rpl32 ribosomal protein L32 JBrowse link 4 147,715,480 147,719,044 RGD:1624291
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps18 ribosomal protein S18 JBrowse link 20 5,441,875 5,445,553 RGD:1624291
G Rps20 ribosomal protein S20 JBrowse link 5 16,706,052 16,707,214 RGD:1624291
G Rps21-ps1 ribosomal protein S21, pseudogene 1 JBrowse link 5 159,606,647 159,606,990 RGD:1624291
G Rps23 ribosomal protein S23 JBrowse link 2 19,823,234 19,824,804 RGD:1624291
G Rps26 ribosomal protein S26 JBrowse link 7 3,052,112 3,053,662 RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1600115
RGD:1624291
G Rps29 ribosomal protein S29 JBrowse link 6 91,455,333 91,456,709 RGD:1624291
G Rps3 ribosomal protein S3 JBrowse link 1 164,435,868 164,441,167 RGD:1624291
G Rpsa ribosomal protein SA JBrowse link 8 128,806,053 128,809,987 RGD:1624291
endoplasmic reticulum Sec complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sec61b SEC61 translocon subunit beta JBrowse link 5 63,192,322 63,200,532 RGD:13792537
Sec61 translocon complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 JBrowse link 1 187,770,160 187,779,675 RGD:1624291
RGD:13792537
G Sec61a1 SEC61 translocon subunit alpha 1 JBrowse link 4 120,453,577 120,467,932 RGD:13792537
G Sec61a2 SEC61 translocon subunit alpha 2 JBrowse link 17 76,358,947 76,385,860 RGD:13792537
G Sec61b SEC61 translocon subunit beta JBrowse link 5 63,192,322 63,200,532 RGD:1600115
G Ssr3 signal sequence receptor subunit 3 JBrowse link 2 156,010,997 156,023,853 RGD:61758
G Ssr4 signal sequence receptor subunit 4 JBrowse link X 156,995,763 156,999,702 RGD:61758
Sec62/Sec63 complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sec63 SEC63 homolog, protein translocation regulator JBrowse link 20 47,494,270 47,563,222 RGD:13792537
signal recognition particle receptor complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Derl1 derlin 1 JBrowse link 7 97,737,176 97,759,852 RGD:1624291
G Derl2 derlin 2 JBrowse link 10 57,641,682 57,653,554 RGD:1624291
G Derl3 derlin 3 JBrowse link 20 13,692,102 13,707,645 RGD:1624291
G Rp9 RP9, pre-mRNA splicing factor JBrowse link 8 23,450,111 23,482,939 RGD:1624291
G Srpra SRP receptor subunit alpha JBrowse link 8 36,410,683 36,416,766 RGD:1600115
Ssh1 translocon complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028668.1 RGD:13792537
G AABR07041141.1 RGD:13792537
G AABR07048012.1 RGD:13792537
G AABR07048013.1 RGD:13792537
G LOC100362376 LRRGT00025-like JBrowse link X 120,521,595 120,521,921 RGD:13792537
G LOC108348617 protein transport protein Sec61 subunit gamma pseudogene JBrowse link 17 79,829,305 79,829,511 RGD:13792537
G LOC499136 LRRGT00021 JBrowse link 1 97,783,806 97,785,490 RGD:13792537
G Sec61g SEC61 translocon subunit gamma JBrowse link 14 99,774,589 99,780,964 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20300
    cellular anatomical entity 19956
      membrane 10079
        organelle membrane 2755
          endoplasmic reticulum membrane 887
            rough endoplasmic reticulum membrane 55
              cytoplasmic side of rough endoplasmic reticulum membrane 23
              endoplasmic reticulum Sec complex + 2
              lumenal side of rough endoplasmic reticulum membrane 0
              signal recognition particle receptor complex 5
              translocon complex + 14
Path 2
Term Annotations click to browse term
  cellular_component 20300
    cellular anatomical entity 19956
      organelle 12977
        intracellular organelle 12441
          intracellular membrane-bounded organelle 10250
            endoplasmic reticulum 1308
              rough endoplasmic reticulum 140
                rough endoplasmic reticulum membrane 55
                  cytoplasmic side of rough endoplasmic reticulum membrane 23
                  endoplasmic reticulum Sec complex + 2
                  lumenal side of rough endoplasmic reticulum membrane 0
                  signal recognition particle receptor complex 5
                  translocon complex + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.