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ONTOLOGY REPORT - ANNOTATIONS


Term:extracellular matrix
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Accession:GO:0031012 term browser browse the term
Definition:A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
Synonyms:exact_synonym: proteinaceous extracellular matrix
 narrow_synonym: matrisome
 alt_id: GO:0005578
 xref: NIF_Subcellular:nlx_subcell_20090513;   Wikipedia:Extracellular_matrix


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extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr33:7,265,804...7,498,973
Ensembl chr33:7,266,685...7,418,106
JBrowse link
G ACAN aggrecan IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544
JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945
JBrowse link
G ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:53,090,819...53,110,533
Ensembl chr20:53,090,800...53,108,493
JBrowse link
G ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:49,839,252...49,867,295
Ensembl chr 9:49,839,252...49,867,295
JBrowse link
G ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:21,534,309...21,612,528
Ensembl chr 4:21,534,006...21,611,987
JBrowse link
G ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:4,457,879...4,480,210
Ensembl chr 5:4,457,959...4,479,875
JBrowse link
G ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:8,196,733...8,346,215
Ensembl chr34:8,196,716...8,346,309
JBrowse link
G ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:40,613,902...40,939,616
Ensembl chr 3:40,613,759...40,939,615
JBrowse link
G ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:73,769,462...73,907,024
Ensembl chr 5:73,772,114...73,905,264
JBrowse link
G ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:18,272,602...18,500,581
Ensembl chr11:18,272,412...18,499,496
JBrowse link
G ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:2,279,983...2,504,630
Ensembl chr11:2,280,108...2,502,635
JBrowse link
G ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:10,492,587...10,655,681
Ensembl chr27:10,492,301...10,675,655
JBrowse link
G ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:21,283,555...21,292,432
Ensembl chr38:21,284,330...21,292,437
JBrowse link
G ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:50,955,180...51,249,075
Ensembl chr 2:50,955,481...51,236,421
JBrowse link
G ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:58,182,316...58,223,194
Ensembl chr 3:58,188,004...58,226,185
JBrowse link
G ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:4,479,874...4,517,211
Ensembl chr 5:4,496,791...4,516,594
JBrowse link
G ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:26,589,529...26,749,422
Ensembl chr20:26,588,654...26,748,604
JBrowse link
G ADAMTSL1 ADAMTS like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:37,880,723...38,754,287
Ensembl chr11:38,372,186...38,751,972
JBrowse link
G ADAMTSL2 ADAMTS like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:49,925,738...49,958,870
Ensembl chr 9:49,925,755...49,958,300
JBrowse link
G ADAMTSL3 ADAMTS like 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:55,358,869...55,695,198
Ensembl chr 3:55,357,888...55,693,167
JBrowse link
G ADAMTSL4 ADAMTS like 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,736,628...59,747,689
Ensembl chr17:59,736,534...59,746,980
JBrowse link
G ADAMTSL5 ADAMTS like 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:57,351,242...57,357,934
Ensembl chr20:57,351,575...57,357,520
JBrowse link
G AHSG alpha 2-HS glycoprotein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:19,221,034...19,228,866
Ensembl chr34:19,221,107...19,228,716
JBrowse link
G ALPL alkaline phosphatase, biomineralization associated IEA Ensembl GO_REF:0000107 NCBI chr 2:77,559,791...77,614,102
Ensembl chr 2:77,559,791...77,614,820
JBrowse link
G AMELX amelogenin X-linked ISO RGD PMID:12667550 RGD:1599089 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351
JBrowse link
G AMTN amelotin ISO PMID:16787391
(MGI:MGI:3617591|PMID:16304441)
HGNC PMID:16304441, PMID:16787391 MGI:MGI:3617591, RGD:2304068 NCBI chr13:59,855,278...59,867,133
Ensembl chr13:59,852,490...59,867,516
JBrowse link
G APOE apolipoprotein E ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:110,525,717...110,528,534
Ensembl chr 1:110,525,722...110,528,440
JBrowse link
G ASPN asporin IEA Ensembl GO_REF:0000107 NCBI chr 1:98,881,610...98,905,641
Ensembl chr 1:98,881,690...98,904,945
JBrowse link
G B9D2 B9 domain containing 2 ISO (MGI:MGI:2386340|PMID:12208849), (MGI:MGI:3828240|PMID:18835815), (MGI:MGI:80427|PMID:2209468), (MGI:MGI:85085|PMID:9008713) MGI PMID:2209468, PMID:9008713, PMID:12208849, PMID:18835815 MGI:MGI:2386340, MGI:MGI:3828240, MGI:MGI:80427, MGI:MGI:85085 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BCAN brevican IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178
JBrowse link
G BGN biglycan IEA Ensembl GO_REF:0000107 NCBI chr  X:121,330,371...121,334,634
Ensembl chr  X:121,330,259...121,334,634
JBrowse link
G BMPER BMP binding endothelial regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:45,910,634...46,154,922
Ensembl chr14:45,910,739...46,153,501
JBrowse link
G C12H6orf15 chromosome 12 C6orf15 homolog ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr12:815,319...817,444
Ensembl chr12:815,483...816,767
JBrowse link
G CCBE1 collagen and calcium binding EGF domains 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:16,597,389...16,819,888
Ensembl chr 1:16,597,334...16,819,894
JBrowse link
G CCDC80 coiled-coil domain containing 80 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr33:17,105,086...17,141,380
Ensembl chr33:17,105,086...17,139,896
JBrowse link
G CCN1 cellular communication network factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:62,443,285...62,446,246
Ensembl chr 6:62,443,675...62,445,994
JBrowse link
G CCN2 cellular communication network factor 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:25,508,082...25,511,058
Ensembl chr 1:25,507,662...25,510,145
JBrowse link
G CCN3 cellular communication network factor 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:18,507,586...18,515,755
Ensembl chr13:18,507,580...18,514,619
JBrowse link
G CCN4 cellular communication network factor 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:29,648,720...29,683,822
Ensembl chr13:29,648,639...29,679,732
JBrowse link
G CCN5 cellular communication network factor 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:32,161,703...32,174,573
Ensembl chr24:32,161,216...32,173,866
JBrowse link
G CCN6 cellular communication network factor 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:68,488,846...68,499,104
Ensembl chr12:68,478,905...68,498,049
JBrowse link
G CD180 CD180 molecule IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:52,644,357...52,660,830
Ensembl chr 2:52,645,766...52,660,790
JBrowse link
G CHAD chondroadherin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,397,902...26,401,824
Ensembl chr 9:26,398,595...26,402,204
JBrowse link
G CHADL chondroadherin like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:23,992,848...24,006,492
Ensembl chr10:23,953,912...24,003,162
JBrowse link
G COCH cochlin ISO (MGI:MGI:5525040|PMID:23684986), (MGI:MGI:5526989|PMID:11709536) MGI PMID:11709536, PMID:23684986 MGI:MGI:5525040, MGI:MGI:5526989 NCBI chr 8:10,215,101...10,230,017
Ensembl chr 8:10,214,536...10,233,550
JBrowse link
G COL10A1 collagen type X alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:71,803,372...71,810,049
Ensembl chr12:71,798,692...71,809,399
JBrowse link
G COL11A1 collagen type XI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
JBrowse link
G COL11A2 collagen type XI alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:2,626,829...2,656,680
Ensembl chr12:2,627,828...2,655,814
JBrowse link
G COL13A1 collagen type XIII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:20,838,163...20,987,412
Ensembl chr 4:20,837,650...20,986,962
JBrowse link
G COL15A1 collagen type XV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:56,026,209...56,131,698
Ensembl chr11:56,025,269...56,130,861
JBrowse link
G COL16A1 collagen type XVI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:69,410,283...69,459,382
Ensembl chr 2:69,410,155...69,459,335
JBrowse link
G COL17A1 collagen type XVII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:16,349,926...16,402,213
Ensembl chr28:16,350,564...16,402,056
JBrowse link
G COL19A1 collagen type XIX alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:32,452,653...32,760,310
Ensembl chr12:32,449,744...32,755,226
JBrowse link
G COL1A1 collagen type I alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927
JBrowse link
G COL1A2 collagen type I alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:19,883,731...19,919,527
Ensembl chr14:19,883,868...19,919,527
JBrowse link
G COL22A1 collagen type XXII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:33,735,490...33,996,229
Ensembl chr13:33,735,656...33,996,401
JBrowse link
G COL23A1 collagen type XXIII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:2,997,504...3,319,948
Ensembl chr11:2,997,021...3,318,867
JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:61,931,272...62,318,091
Ensembl chr 6:61,931,900...62,316,899
JBrowse link
G COL25A1 collagen type XXV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:29,119,875...29,567,994
Ensembl chr32:29,124,996...29,567,481
JBrowse link
G COL26A1 collagen type XXVI alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr 6:8,348,223...8,502,309
Ensembl chr 6:8,380,486...8,502,083
JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947
JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:22,991,469...23,153,333
Ensembl chr14:22,993,286...23,153,305
JBrowse link
G COL2A1 collagen type II alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G COL3A1 collagen type III alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
JBrowse link
G COL4A1 collagen type IV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666
JBrowse link
G COL4A2 collagen type IV alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297
JBrowse link
G COL4A3 collagen type IV alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782
JBrowse link
G COL4A4 collagen type IV alpha 4 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189
JBrowse link
G COL4A5 collagen type IV alpha 5 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679
JBrowse link
G COL4A6 collagen type IV alpha 6 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703
JBrowse link
G COL5A1 collagen type V alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
JBrowse link
G COL5A2 collagen type V alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564
JBrowse link
G COL5A3 collagen type V alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:51,037,604...51,075,220
Ensembl chr20:51,037,621...51,074,993
JBrowse link
G COL6A1 collagen type VI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062
JBrowse link
G COL6A2 collagen type VI alpha 2 chain ISO (MGI:MGI:3665360|PMID:16810681), (MGI:MGI:82649|PMID:8806434) MGI PMID:8806434, PMID:16810681 MGI:MGI:3665360, MGI:MGI:82649 NCBI chr31:39,433,174...39,448,051 JBrowse link
G COL6A3 collagen type VI alpha 3 chain IEA Ensembl GO_REF:0000107 NCBI chr25:47,971,439...48,052,673
Ensembl chr25:47,971,315...48,052,402
JBrowse link
G COL6A5 collagen type VI alpha 5 chain ISO (MGI:MGI:5565207|PMID:24563484) MGI PMID:24563484 MGI:MGI:5565207 NCBI chr23:27,596,450...27,726,246
Ensembl chr23:27,596,395...27,721,265
JBrowse link
G COL6A6 collagen type VI alpha 6 chain IEA Ensembl GO_REF:0000107 NCBI chr23:27,759,707...27,900,971
Ensembl chr23:27,759,103...27,900,154
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:6,285,742...6,428,172
Ensembl chr33:6,285,415...6,425,414
JBrowse link
G COL8A2 collagen type VIII alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:6,095,872...6,115,538
Ensembl chr15:6,095,728...6,115,538
JBrowse link
G COL9A1 collagen type IX alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574
JBrowse link
G COL9A3 collagen type IX alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:46,653,400...46,669,183
Ensembl chr24:46,662,376...46,667,884
JBrowse link
G CPN2 carboxypeptidase N subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:31,352,776...31,361,795
Ensembl chr33:31,358,687...31,360,330
JBrowse link
G CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:67,643,225...67,707,438
Ensembl chr 5:67,645,179...67,692,122
JBrowse link
G CTHRC1 collagen triple helix repeat containing 1 ISO PMID:15618538 MGI PMID:15618538 RGD:1547887 NCBI chr13:4,801,049...4,811,565
Ensembl chr13:4,805,577...4,811,282
JBrowse link
G DCN decorin ISO RGD PMID:10190750, PMID:12840020 RGD:11556225, RGD:728372 NCBI chr15:31,833,492...31,887,699
Ensembl chr15:31,833,746...31,877,417
JBrowse link
G DMBT1 deleted in malignant brain tumors 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:32,198,250...32,286,517
Ensembl chr28:32,219,448...32,286,532
JBrowse link
G DMP1 dentin matrix acidic phosphoprotein 1 IEA Ensembl GO_REF:0000107 NCBI chr32:11,022,900...11,053,900
Ensembl chr32:11,045,508...11,053,252
JBrowse link
G DSPP dentin sialophosphoprotein ISO (MGI:MGI:3839047|PMID:19001636), (MGI:MGI:5448800|PMID:22798071) MGI PMID:19001636, PMID:22798071 MGI:MGI:3839047, MGI:MGI:5448800 NCBI chr32:11,017,440...11,022,780 JBrowse link
G ECM2 extracellular matrix protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:98,832,107...98,865,084
Ensembl chr 1:98,832,677...98,864,700
JBrowse link
G EGFL6 EGF like domain multiple 6 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr  X:9,944,648...10,062,699
Ensembl chr  X:9,995,846...10,062,266
JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 4:70,391,657...70,574,629
Ensembl chr 4:70,392,330...70,575,225
JBrowse link
G ELN elastin ISO RGD PMID:18847363 RGD:9585685 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
JBrowse link
G EMID1 EMI domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr26:22,520,921...22,572,250
Ensembl chr26:22,520,915...22,572,262
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 ISO (MGI:MGI:3027195|PMID:14701737) MGI PMID:14701737 MGI:MGI:3027195 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889
JBrowse link
G ENAM enamelin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:59,934,299...59,948,279
Ensembl chr13:59,934,299...59,947,949
JBrowse link
G EPYC epiphycan ISO (MGI:MGI:5644410|PMID:19932218) MGI PMID:19932218 MGI:MGI:5644410 NCBI chr15:31,670,926...31,708,667
Ensembl chr15:31,671,182...31,708,674
JBrowse link
G FBLN1 fibulin 1 ISO (PMID:2269669) UniProtKB PMID:2269669 NCBI chr10:20,498,097...20,564,776
Ensembl chr10:20,498,567...20,627,836
JBrowse link
G FBLN7 fibulin 7 ISO (MGI:MGI:6279558|PMID:29730503) MGI PMID:29730503 MGI:MGI:6279558 NCBI chr17:36,525,866...36,574,671
Ensembl chr17:36,525,756...36,571,523
JBrowse link
G FBN1 fibrillin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FBN2 fibrillin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G FBN3 fibrillin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:52,723,995...52,777,319
Ensembl chr20:52,724,651...52,776,884
JBrowse link
G FCGBP Fc fragment of IgG binding protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:113,586,795...113,625,932 JBrowse link
G FGF1 fibroblast growth factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:37,467,431...37,554,770
Ensembl chr 2:37,470,985...37,554,619
JBrowse link
G FN1 fibronectin 1 ISO (MGI:MGI:1101335|PMID:9421166), (MGI:MGI:2149189|PMID:11511678), (MGI:MGI:3577694|PMID:15728191), (MGI:MGI:3628676|PMID:15065125), (MGI:MGI:3806197|PMID:18559979), (MGI:MGI:5440773|PMID:22821713), (MGI:MGI:5462513|PMID:22984613), (MGI:MGI:80427|PMID:2209468)
(PMID:26571399)
MGI
RGD
PMID:2209468, PMID:9421166, PMID:10685571, PMID:11511678, PMID:15065125, PMID:15728191, PMID:18559979, PMID:22821713, PMID:22984613, PMID:26571399 MGI:MGI:1101335, MGI:MGI:2149189, MGI:MGI:3577694, MGI:MGI:3628676, MGI:MGI:3806197, MGI:MGI:5440773, MGI:MGI:5462513, MGI:MGI:80427, RGD:11556221 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123
JBrowse link
G GFOD2 glucose-fructose oxidoreductase domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:81,738,653...81,776,853
Ensembl chr 5:81,766,864...81,776,206
JBrowse link
G GLG1 golgi glycoprotein 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:76,020,743...76,171,477
Ensembl chr 5:76,020,084...76,167,007
JBrowse link
G GPC1 glypican 1 ISO (MGI:MGI:4461098|PMID:20100867) UniProtKB PMID:20100867 MGI:MGI:4461098 NCBI chr25:50,484,554...50,492,940
Ensembl chr25:50,482,071...50,515,877
JBrowse link
G GPLD1 glycosylphosphatidylinositol specific phospholipase D1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:22,495,001...22,556,264
Ensembl chr35:22,495,073...22,554,105
JBrowse link
G HAPLN1 hyaluronan and proteoglycan link protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:23,999,148...24,077,935
Ensembl chr 3:23,998,545...24,074,580
JBrowse link
G HAPLN2 hyaluronan and proteoglycan link protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:41,340,493...41,346,607
Ensembl chr 7:41,341,883...41,344,117
JBrowse link
G HAPLN3 hyaluronan and proteoglycan link protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:52,033,985...52,052,572
Ensembl chr 3:52,033,991...52,051,617
JBrowse link
G HAPLN4 hyaluronan and proteoglycan link protein 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:43,932,364...43,940,438
Ensembl chr20:43,933,769...43,938,262
JBrowse link
G HPSE heparanase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr32:7,166,437...7,199,659
Ensembl chr32:7,167,856...7,199,665
JBrowse link
G HPSE2 heparanase 2 (inactive) IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr28:11,584,440...12,215,732
Ensembl chr28:11,585,807...12,215,614
JBrowse link
G HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 IEA Ensembl GO_REF:0000107 NCBI chr18:25,907,366...26,061,643
Ensembl chr18:25,908,555...26,061,616
JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 ISO (MGI:MGI:1349497|PMID:10579729), (MGI:MGI:3525426|PMID:15381701), (MGI:MGI:3640625|PMID:16407285), (MGI:MGI:5470500|PMID:23217742) MGI PMID:10579729, PMID:15381701, PMID:16407285, PMID:23217742 MGI:MGI:1349497, MGI:MGI:3525426, MGI:MGI:3640625, MGI:MGI:5470500 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724
JBrowse link
G IHH Indian hedgehog signaling molecule ISO (MGI:MGI:2149274|PMID:11476578) MGI PMID:11476578 MGI:MGI:2149274 NCBI chr37:25,616,942...25,622,989 JBrowse link
G IL1RL1 interleukin 1 receptor like 1 ISO (MGI:MGI:71218|PMID:7883081) MGI PMID:7883081 MGI:MGI:71218 NCBI chr10:40,658,191...40,732,097
Ensembl chr10:40,659,041...40,677,357
JBrowse link
G ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 ISO (MGI:MGI:3761906|PMID:17675295) MGI PMID:17675295 MGI:MGI:3761906 NCBI chr20:37,038,070...37,051,866
Ensembl chr20:37,038,070...37,052,675
JBrowse link
G KAZALD1 Kazal type serine peptidase inhibitor domain 1 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr28:13,741,085...13,745,426
Ensembl chr28:13,742,322...13,745,119
JBrowse link
G LAMA1 laminin subunit alpha 1 ISO (MGI:MGI:2179164|PMID:11984530), (MGI:MGI:3028398|PMID:14697343), (MGI:MGI:3624056|PMID:16554364), (MGI:MGI:3628676|PMID:15065125), (MGI:MGI:75907|PMID:7589890), (MGI:MGI:80991|PMID:1907584) MGI PMID:1907584, PMID:7589890, PMID:11984530, PMID:14697343, PMID:15065125, PMID:16554364 MGI:MGI:2179164, MGI:MGI:3028398, MGI:MGI:3624056, MGI:MGI:3628676, MGI:MGI:75907, MGI:MGI:80991 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151
JBrowse link
G LAMA5 laminin subunit alpha 5 ISO (MGI:MGI:3624056|PMID:16554364) MGI PMID:16554364 MGI:MGI:3624056 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB1 laminin subunit beta 1 ISO (MGI:MGI:3624056|PMID:16554364) MGI PMID:16554364 MGI:MGI:3624056 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMC1 laminin subunit gamma 1 ISO RGD PMID:8648916 RGD:633159 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000
JBrowse link
G LAMC2 laminin subunit gamma 2 ISO RGD PMID:9417868 RGD:633095 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085
JBrowse link
G LGALS3 galectin 3 ISO (MGI:MGI:3589495|PMID:15800063) MGI PMID:15800063 MGI:MGI:3589495 NCBI chr 8:30,977,438...30,994,711
Ensembl chr 8:30,983,633...30,994,705
JBrowse link
G LINGO1 leucine rich repeat and Ig domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:38,668,199...38,738,178
Ensembl chr30:38,721,394...38,737,464
JBrowse link
G LINGO2 leucine rich repeat and Ig domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:45,997,900...47,115,857
Ensembl chr11:45,998,249...46,000,069
JBrowse link
G LINGO3 leucine rich repeat and Ig domain containing 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:56,755,986...56,757,919 JBrowse link
G LINGO4 leucine rich repeat and Ig domain containing 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:60,814,948...60,820,517
Ensembl chr17:60,815,499...60,817,448
JBrowse link
G LOC100856444 mucin-6-like IBA (PMID:21873635) GO_Central PMID:21873635
G LOC102151306 mucin-2-like IBA (PMID:21873635) GO_Central PMID:21873635
G LOC487628 thrombospondin type-1 domain-containing protein 4 ISO (MGI:MGI:4453293|PMID:19940141) MGI PMID:19940141 MGI:MGI:4453293 NCBI chr30:35,156,926...35,358,673
Ensembl chr30:35,156,981...35,353,767
JBrowse link
G LOC609026 C1q and TNF related 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:14,735,370...14,748,054 JBrowse link
G LOX lysyl oxidase IEA Ensembl GO_REF:0000107 NCBI chr11:12,023,645...12,040,015
Ensembl chr11:12,027,250...12,039,819
JBrowse link
G LOXL1 lysyl oxidase like 1 ISO (MGI:MGI:1328524|PMID:10022501)
PMID:16251195
MGI PMID:10022501, PMID:16251195 MGI:MGI:1328524, RGD:8553592 NCBI chr30:37,191,201...37,204,163
Ensembl chr30:37,183,128...37,204,058
JBrowse link
G LRIG1 leucine rich repeats and immunoglobulin like domains 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:24,907,904...25,033,841
Ensembl chr20:24,890,191...25,032,647
JBrowse link
G LRIG2 leucine rich repeats and immunoglobulin like domains 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:62,487,802...62,548,883
Ensembl chr17:62,489,462...62,548,666
JBrowse link
G LRIG3 leucine rich repeats and immunoglobulin like domains 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:2,723,836...2,772,630
Ensembl chr10:2,724,951...2,772,636
JBrowse link
G LRRC15 leucine rich repeat containing 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:31,332,502...31,345,895
Ensembl chr33:31,332,496...31,342,583
JBrowse link
G LRRC17 leucine rich repeat containing 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:17,103,834...17,132,653
Ensembl chr18:17,104,184...17,118,012
JBrowse link
G LRRC24 leucine rich repeat containing 24 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:37,941,483...37,943,866
Ensembl chr13:37,940,594...37,947,991
JBrowse link
G LRRC3B leucine rich repeat containing 3B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr23:17,300,448...17,386,203
Ensembl chr23:17,300,769...17,301,548
JBrowse link
G LRRC3C leucine rich repeat containing 3C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:22,581,358...22,596,646
Ensembl chr 9:22,581,615...22,582,436
JBrowse link
G LRRN1 leucine rich repeat neuronal 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:13,612,829...13,651,983
Ensembl chr20:13,617,196...13,619,346
JBrowse link
G LRRN2 leucine rich repeat neuronal 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:1,163,974...1,218,069
Ensembl chr38:1,164,664...1,166,802
JBrowse link
G LRRN3 leucine rich repeat neuronal 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:50,893,254...50,928,475
Ensembl chr14:50,925,878...50,928,004
JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:43,833,906...43,842,911
Ensembl chr17:43,834,562...43,836,130
JBrowse link
G LRRTM3 leucine rich repeat transmembrane neuronal 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:18,320,720...18,485,863
Ensembl chr 4:18,321,084...18,481,131
JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 ISO (MGI:MGI:85085|PMID:9008713)
(PMID:8617200)
MGI
UniProt
PMID:8617200, PMID:9008713 MGI:MGI:85085 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 ISO (MGI:MGI:2386340|PMID:12208849)
(PMID:9660815)
MGI
UniProt
PMID:9660815, PMID:12208849 MGI:MGI:2386340 NCBI chr 1:113,124,109...113,152,283
Ensembl chr 1:113,124,109...113,150,442
JBrowse link
G LUM lumican ISO (MGI:MGI:2446994|PMID:12128073) MGI
RGD
PMID:11348051, PMID:12128073 MGI:MGI:2446994, RGD:1582122 NCBI chr15:31,792,872...31,800,444
Ensembl chr15:31,793,233...31,800,912
JBrowse link
G MAMDC2 MAM domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 1:87,303,230...87,451,197
Ensembl chr 1:87,304,216...87,451,037
JBrowse link
G MATN1 matrilin 1 ISO (MGI:MGI:2157579|PMID:11102754) MGI PMID:11102754 MGI:MGI:2157579 NCBI chr 2:70,225,642...70,234,972 JBrowse link
G MATN2 matrilin 2 ISO (MGI:MGI:2157579|PMID:11102754) MGI PMID:11102754 MGI:MGI:2157579 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994
JBrowse link
G MATN3 matrilin 3 ISO (MGI:MGI:2157579|PMID:11102754) MGI PMID:11102754 MGI:MGI:2157579 NCBI chr17:15,037,175...15,054,451
Ensembl chr17:15,037,995...15,054,436
JBrowse link
G MFAP5 microfibril associated protein 5 ISO (MGI:MGI:3698678|PMID:17099216) MGI PMID:17099216 MGI:MGI:3698678 NCBI chr27:37,028,518...37,042,657
Ensembl chr27:37,028,037...37,040,592
JBrowse link
G MMP1 matrix metallopeptidase 1 IEA InterPro GO_REF:0000002 NCBI chr 5:28,978,385...28,986,644
Ensembl chr 5:28,978,473...28,986,648
JBrowse link
G MMP11 matrix metallopeptidase 11 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr26:28,730,173...28,741,506
Ensembl chr26:28,727,332...28,741,415
JBrowse link
G MMP12 matrix metallopeptidase 12 IEA InterPro GO_REF:0000002 NCBI chr 5:28,918,626...28,933,404
Ensembl chr 5:28,918,594...28,933,309
JBrowse link
G MMP13 matrix metallopeptidase 13 IEA InterPro GO_REF:0000002 NCBI chr 5:28,793,568...28,864,832
Ensembl chr 5:28,850,522...28,864,121
JBrowse link
G MMP14 matrix metallopeptidase 14 IEA InterPro GO_REF:0000002 NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122
JBrowse link
G MMP15 matrix metallopeptidase 15 IEA InterPro GO_REF:0000002 NCBI chr 2:58,501,783...58,512,507
Ensembl chr 2:58,504,848...58,512,371
JBrowse link
G MMP16 matrix metallopeptidase 16 IEA InterPro GO_REF:0000002 NCBI chr29:33,896,133...34,207,560
Ensembl chr29:33,917,907...34,207,466
JBrowse link
G MMP17 matrix metallopeptidase 17 IEA InterPro GO_REF:0000002 NCBI chr26:1,008,651...1,019,131
Ensembl chr26:1,009,109...1,018,662
JBrowse link
G MMP19 matrix metallopeptidase 19 IEA InterPro GO_REF:0000002 NCBI chr10:219,193...224,873
Ensembl chr10:219,618...224,778
JBrowse link
G MMP2 matrix metallopeptidase 2 IEA InterPro GO_REF:0000002 NCBI chr 2:60,471,092...60,492,991
Ensembl chr 2:60,471,257...60,494,113
JBrowse link
G MMP20 matrix metallopeptidase 20 IEA InterPro GO_REF:0000002 NCBI chr 5:29,106,717...29,154,628
Ensembl chr 5:29,106,717...29,155,071
JBrowse link
G MMP21 matrix metallopeptidase 21 IEA InterPro GO_REF:0000002 NCBI chr28:34,936,976...34,944,110
Ensembl chr28:34,935,186...34,944,316
JBrowse link
G MMP23 matrix metallopeptidase 23 IEA InterPro GO_REF:0000002 NCBI chr 5:56,693,751...56,697,284
Ensembl chr 5:56,694,966...56,697,284
JBrowse link
G MMP24 matrix metallopeptidase 24 IEA InterPro GO_REF:0000002 NCBI chr24:24,223,049...24,258,082
Ensembl chr24:24,232,833...24,255,725
JBrowse link
G MMP25 matrix metallopeptidase 25 IEA InterPro GO_REF:0000002 NCBI chr 6:38,128,585...38,139,882
Ensembl chr 6:38,130,092...38,140,007
JBrowse link
G MMP26 matrix metallopeptidase 26 IEA InterPro GO_REF:0000002 NCBI chr21:27,416,768...27,429,374
Ensembl chr21:27,423,965...27,428,624
JBrowse link
G MMP27 matrix metallopeptidase 27 IEA InterPro GO_REF:0000002 NCBI chr 5:29,051,205...29,064,364
Ensembl chr 5:29,051,000...29,064,702
JBrowse link
G MMP28 matrix metallopeptidase 28 IEA InterPro GO_REF:0000002 NCBI chr 9:37,873,364...37,907,724
Ensembl chr 9:37,884,430...37,907,719
JBrowse link
G MMP3 matrix metallopeptidase 3 (stromelysin 1, progelatinase) IEA InterPro GO_REF:0000002 NCBI chr 5:28,949,631...28,957,915
Ensembl chr 5:28,949,631...28,958,222
JBrowse link
G MMP7 matrix metallopeptidase 7 IEA InterPro GO_REF:0000002 NCBI chr 5:29,187,902...29,196,157
Ensembl chr 5:29,187,851...29,196,153
JBrowse link
G MMP8 matrix metallopeptidase 8 IEA InterPro GO_REF:0000002 NCBI chr 5:29,036,381...29,047,180
Ensembl chr 5:29,035,820...29,046,808
JBrowse link
G MMP9 matrix metallopeptidase 9 IEA InterPro GO_REF:0000002 NCBI chr24:33,274,260...33,281,116
Ensembl chr24:33,274,268...33,281,293
JBrowse link
G MUC2 mucin 2, oligomeric mucus/gel-forming ISO (MGI:MGI:3052756|PMID:11352827), (MGI:MGI:3851673|PMID:19411636) MGI PMID:11352827, PMID:19411636 MGI:MGI:3052756, MGI:MGI:3851673 NCBI chr18:45,416,347...45,438,226 JBrowse link
G MUC6 mucin 6, oligomeric mucus/gel-forming IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:45,359,412...45,376,678 JBrowse link
G NAV2 neuron navigator 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr21:41,458,280...42,181,227
Ensembl chr21:41,458,984...42,177,813
JBrowse link
G NCAN neurocan IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:43,944,257...43,970,864
Ensembl chr20:43,945,143...43,970,886
JBrowse link
G NDNF neuron derived neurotrophic factor IEA Ensembl GO_REF:0000107 NCBI chr19:19,009,966...19,053,047
Ensembl chr19:19,036,372...19,049,937
JBrowse link
G NDP norrin cystine knot growth factor NDP IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:37,949,560...37,975,573
Ensembl chr  X:37,950,489...37,975,346
JBrowse link
G NID1 nidogen 1 ISO (MGI:MGI:3624079|PMID:16618944) MGI PMID:16618944 MGI:MGI:3624079 NCBI chr 4:3,935,218...4,018,133
Ensembl chr 4:3,935,223...4,017,300
JBrowse link
G NID2 nidogen 2 ISO (MGI:MGI:3624079|PMID:16618944) MGI PMID:16618944 MGI:MGI:3624079 NCBI chr 8:28,240,427...28,300,729
Ensembl chr 8:28,102,780...28,300,507
JBrowse link
G NOTCH2 notch receptor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:56,854,825...57,020,157
Ensembl chr17:56,860,429...57,020,857
JBrowse link
G NPNT nephronectin ISO (MGI:MGI:2137765|PMID:11470831), (MGI:MGI:2153230|PMID:11546798) MGI PMID:11470831, PMID:11546798 MGI:MGI:2137765, MGI:MGI:2153230 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275
JBrowse link
G NRROS negative regulator of reactive oxygen species IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:29,682,182...29,699,469
Ensembl chr33:29,692,371...29,767,771
JBrowse link
G NTN1 netrin 1 ISO RGD PMID:11356879 RGD:633501 NCBI chr 5:33,654,723...33,825,832
Ensembl chr 5:33,637,142...33,825,899
JBrowse link
G OC90 otoconin 90 ISO (MGI:MGI:1328623|PMID:9892667) MGI PMID:9892667 MGI:MGI:1328623 NCBI chr13:28,680,910...28,700,816 JBrowse link
G OIT3 oncoprotein induced transcript 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:23,513,591...23,539,610
Ensembl chr 4:23,513,680...23,538,923
JBrowse link
G OLFML2A olfactomedin like 2A IEA Ensembl GO_REF:0000107 NCBI chr 9:58,190,984...58,221,623
Ensembl chr 9:58,193,765...58,221,546
JBrowse link
G OLFML2B olfactomedin like 2B IEA Ensembl GO_REF:0000107 NCBI chr38:20,651,107...20,693,625
Ensembl chr38:20,658,158...20,693,250
JBrowse link
G OMD osteomodulin ISO (MGI:MGI:3608028|PMID:14673660) MGI PMID:14673660 MGI:MGI:3608028 NCBI chr 1:98,923,507...98,933,751
Ensembl chr 1:98,929,274...98,931,219
JBrowse link
G OPTC opticin IEA
ISS
Ensembl
UniProt
GO_REF:0000024, GO_REF:0000107 NCBI chr38:215,404...223,247
Ensembl chr38:215,404...223,247
JBrowse link
G OTOG otogelin IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr21:40,103,163...40,193,680
Ensembl chr21:40,106,826...40,192,475
JBrowse link
G OTOL1 otolin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:27,405,456...27,454,726
Ensembl chr34:27,413,694...27,455,023
JBrowse link
G PAPLN papilin, proteoglycan like sulfated glycoprotein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:46,587,197...46,620,381
Ensembl chr 8:46,592,854...46,618,612
JBrowse link
G PHOSPHO1 phosphoethanolamine/phosphocholine phosphatase 1 ISO (MGI:MGI:5304258|PMID:19874193) MGI PMID:19874193 MGI:MGI:5304258 NCBI chr 9:25,385,313...25,392,278
Ensembl chr 9:25,385,396...25,392,242
JBrowse link
G POSTN periostin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:3,167,319...3,208,970
Ensembl chr25:3,167,359...3,208,411
JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 ISO (MGI:MGI:2665215|PMID:12700241), (MGI:MGI:3836851|PMID:19141078) MGI PMID:12700241, PMID:19141078 MGI:MGI:2665215, MGI:MGI:3836851 NCBI chr14:59,769,553...59,944,111
Ensembl chr14:59,827,650...59,943,315
JBrowse link
G PTX3 pentraxin 3 IEA Ensembl GO_REF:0000107 NCBI chr23:50,952,835...50,958,607
Ensembl chr23:50,952,885...50,958,167
JBrowse link
G RARRES2 retinoic acid receptor responder 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926
JBrowse link
G RELL2 RELT like 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 2:36,598,175...36,602,607
Ensembl chr 2:36,599,149...36,602,020
JBrowse link
G RELN reelin IEA Ensembl GO_REF:0000107 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875
JBrowse link
G RTN4RL1 reticulon 4 receptor like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:46,061,619...46,133,970
Ensembl chr 9:46,063,391...46,133,445
JBrowse link
G RTN4RL2 reticulon 4 receptor like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:38,681,742...38,696,661
Ensembl chr18:38,689,025...38,690,234
JBrowse link
G SCARA3 scavenger receptor class A member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:29,891,099...29,966,846
Ensembl chr25:29,917,335...29,968,076
JBrowse link
G SERAC1 serine active site containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:47,599,802...47,651,034
Ensembl chr 1:47,578,472...47,669,494
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMOC2 SPARC related modular calcium binding 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G SPARC secreted protein acidic and cysteine rich ISO (MGI:MGI:83649|PMID:8906420) MGI PMID:8906420 MGI:MGI:83649 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711
JBrowse link
G SPOCK3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 ISO (PMID:11751414) UniProtKB PMID:11751414 NCBI chr15:62,395,713...62,661,308
Ensembl chr15:62,395,707...62,661,312
JBrowse link
G SPON1 spondin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:36,778,435...37,030,042
Ensembl chr21:36,778,458...37,028,636
JBrowse link
G SPON2 spondin 2 ISO (MGI:MGI:2686801|PMID:14691481) MGI PMID:14691481 MGI:MGI:2686801 NCBI chr 3:91,411,245...91,421,245 JBrowse link
G SSC5D scavenger receptor cysteine rich family member with 5 domains IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:102,195,426...102,222,352
Ensembl chr 1:102,196,890...102,221,444
JBrowse link
G TECTA tectorin alpha ISO (MGI:MGI:86678|PMID:9079715) MGI PMID:9079715 MGI:MGI:86678 NCBI chr 5:12,879,963...12,949,211
Ensembl chr 5:12,879,951...12,949,147
JBrowse link
G TECTB tectorin beta IEA Ensembl GO_REF:0000107 NCBI chr28:23,359,019...23,378,150
Ensembl chr28:23,359,162...23,376,760
JBrowse link
G TFIP11 tuftelin interacting protein 11 IEA Ensembl GO_REF:0000107 NCBI chr26:20,177,896...20,192,466
Ensembl chr26:20,177,904...20,192,469
JBrowse link
G TGFB1 transforming growth factor beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:112,629,476...112,643,885
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G TGFB2 transforming growth factor beta 2 ISS AgBase GO_REF:0000024 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFB3 transforming growth factor beta 3 ISS AgBase GO_REF:0000024 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816
JBrowse link
G TGFBI transforming growth factor beta induced IEA Ensembl GO_REF:0000107 NCBI chr11:23,932,038...23,971,983
Ensembl chr11:23,938,453...23,971,607
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 ISO RGD PMID:10207840 RGD:1579948 NCBI chr 6:57,025,096...57,220,240
Ensembl chr 6:57,025,112...57,217,121
JBrowse link
G THBS1 thrombospondin 1 ISO (PMID:6341993) UniProtKB PMID:6341993 NCBI chr30:6,770,212...6,786,875
Ensembl chr30:6,769,470...6,784,915
JBrowse link
G THBS2 thrombospondin 2 ISO (MGI:MGI:1860780|PMID:10669089) MGI PMID:10669089 MGI:MGI:1860780 NCBI chr 1:56,402,519...56,429,975
Ensembl chr 1:56,402,524...56,451,892
JBrowse link
G THBS4 thrombospondin 4 ISO RGD PMID:7490284 RGD:61768 NCBI chr 3:26,945,001...26,982,224
Ensembl chr 3:26,945,081...26,988,597
JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:41,201,623...41,205,314
Ensembl chr  X:41,201,638...41,205,310
JBrowse link
G TIMP2 TIMP metallopeptidase inhibitor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:2,521,882...2,533,883
Ensembl chr 9:2,521,882...2,533,989
JBrowse link
G TIMP4 TIMP metallopeptidase inhibitor 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:6,399,522...6,405,089
Ensembl chr20:6,399,522...6,405,089
JBrowse link
G TLR3 toll like receptor 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:44,617,012...44,633,591
Ensembl chr16:44,550,846...44,653,247
JBrowse link
G TNC tenascin C ISO RGD PMID:7519614, PMID:10190750, PMID:10320102 RGD:11553836, RGD:11556225, RGD:634489 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G TNFRSF11B TNF receptor superfamily member 11b IEA Ensembl GO_REF:0000107 NCBI chr13:18,155,765...18,183,263
Ensembl chr13:18,156,367...18,183,444
JBrowse link
G TNN tenascin N IEA Ensembl GO_REF:0000107 NCBI chr 7:24,246,481...24,342,686
Ensembl chr 7:24,230,930...24,308,520
JBrowse link
G TNR tenascin R ISO (MGI:MGI:3836851|PMID:19141078), (MGI:MGI:67553|PMID:7530142) RGD
MGI
PMID:7530142, PMID:9925948, PMID:19141078 MGI:MGI:3836851, MGI:MGI:67553, RGD:634496 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530
JBrowse link
G TNXB tenascin XB ISO (MGI:MGI:5565207|PMID:24563484), (MGI:MGI:70320|PMID:7512972) MGI PMID:7512972, PMID:24563484 MGI:MGI:5565207, MGI:MGI:70320 NCBI chr12:1,453,227...1,510,171
Ensembl chr12:1,453,260...1,509,749
JBrowse link
G TRIL TLR4 interactor with leucine rich repeats IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:41,999,558...42,004,418
Ensembl chr14:42,001,920...42,004,397
JBrowse link
G UCMA upper zone of growth plate and cartilage matrix associated IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:23,287,410...23,307,116
Ensembl chr 2:23,287,551...23,298,035
JBrowse link
G VASN vasorin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:37,014,704...37,025,734
Ensembl chr 6:37,015,333...37,017,351
JBrowse link
G VCAN versican IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192
JBrowse link
G VIT vitrin ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr17:29,142,924...29,259,800
Ensembl chr17:29,143,069...29,243,406
JBrowse link
G VTN vitronectin ISO (MGI:MGI:3577694|PMID:15728191) MGI PMID:15728191 MGI:MGI:3577694 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864
JBrowse link
G VWA1 von Willebrand factor A domain containing 1 ISO (MGI:MGI:3640625|PMID:16407285), (MGI:MGI:3807344|PMID:18757743) MGI PMID:16407285, PMID:18757743 MGI:MGI:3640625, MGI:MGI:3807344 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502
JBrowse link
G VWC2 von Willebrand factor C domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr18:1,248,612...1,350,965
Ensembl chr18:1,257,357...1,350,856
JBrowse link
G VWF von Willebrand factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:38,834,812...38,972,614
Ensembl chr27:38,833,837...39,320,142
JBrowse link
G WNT11 Wnt family member 11 IEA Ensembl GO_REF:0000107 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173
JBrowse link
G WNT3 Wnt family member 3 IEA Ensembl GO_REF:0000107 NCBI chr 9:10,073,019...10,124,454
Ensembl chr 9:10,077,567...10,124,508
JBrowse link
G WNT4 Wnt family member 4 IEA Ensembl GO_REF:0000107 NCBI chr 2:77,112,045...77,129,702
Ensembl chr 2:77,101,300...77,127,111
JBrowse link
G WNT5A Wnt family member 5A IEA Ensembl GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G WNT5B Wnt family member 5B IEA Ensembl GO_REF:0000107 NCBI chr27:43,662,482...43,679,713
Ensembl chr27:43,620,284...43,677,078
JBrowse link
G WNT6 Wnt family member 6 IEA Ensembl GO_REF:0000107 NCBI chr37:25,452,875...25,457,437
Ensembl chr37:25,453,905...25,456,654
JBrowse link
G WNT7A Wnt family member 7A IEA Ensembl GO_REF:0000107 NCBI chr20:4,072,010...4,139,521
Ensembl chr20:4,073,929...4,139,436
JBrowse link
G ZP3 zona pellucida glycoprotein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:7,586,212...7,594,610
Ensembl chr 6:7,585,970...7,594,610
JBrowse link
basement membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan IEA Ensembl GO_REF:0000107 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544
JBrowse link
G ACHE acetylcholinesterase IEA Ensembl GO_REF:0000107 NCBI chr 6:8,874,747...8,879,926
Ensembl chr 6:8,873,584...8,879,702
JBrowse link
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 IEA Ensembl GO_REF:0000107 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945
JBrowse link
G AGRN agrin IEA Ensembl GO_REF:0000107 NCBI chr 5:56,239,621...56,273,679
Ensembl chr 5:56,239,701...56,272,745
JBrowse link
G ALB albumin ISO RGD PMID:1723977 RGD:1625719 NCBI chr13:62,133,747...62,169,349
Ensembl chr13:62,053,814...62,294,709
JBrowse link
G AMELX amelogenin X-linked ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351
JBrowse link
G AMTN amelotin IEA Ensembl GO_REF:0000107 NCBI chr13:59,855,278...59,867,133
Ensembl chr13:59,852,490...59,867,516
JBrowse link
G ANXA2 annexin A2 IEA UniProt GO_REF:0000044 NCBI chr30:25,176,845...25,210,244
Ensembl chr30:25,115,842...25,218,281
JBrowse link
G ATRN attractin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:17,698,238...17,859,810
Ensembl chr24:17,702,282...17,859,737
JBrowse link
G ATRNL1 attractin like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:25,816,404...26,603,302
Ensembl chr28:25,768,697...26,601,819
JBrowse link
G CASK calcium/calmodulin dependent serine protein kinase colocalizes_with ISO
IEA
(PMID:18664494)
(MGI:MGI:3810856|PMID:18664494)
BHF-UCL
Ensembl
PMID:18664494 GO_REF:0000107, MGI:MGI:3810856 NCBI chr  X:35,939,117...36,296,438
Ensembl chr  X:35,940,647...36,297,014
JBrowse link
G CCDC80 coiled-coil domain containing 80 IEA Ensembl GO_REF:0000107 NCBI chr33:17,105,086...17,141,380
Ensembl chr33:17,105,086...17,139,896
JBrowse link
G CD151 CD151 molecule IEA Ensembl GO_REF:0000107 NCBI chr18:45,195,875...45,200,066
Ensembl chr18:45,196,237...45,200,081
JBrowse link
G COL15A1 collagen type XV alpha 1 chain IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr11:56,026,209...56,131,698
Ensembl chr11:56,025,269...56,130,861
JBrowse link
G COL17A1 collagen type XVII alpha 1 chain IEA UniProt GO_REF:0000044 NCBI chr28:16,349,926...16,402,213
Ensembl chr28:16,350,564...16,402,056
JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain ISO (MGI:MGI:2450496|PMID:12588956), (MGI:MGI:3054601|PMID:15254016), (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:4397493|PMID:19651211), (MGI:MGI:76276|PMID:7568013) MGI PMID:7568013, PMID:12588956, PMID:15254016, PMID:18757743, PMID:19651211 MGI:MGI:2450496, MGI:MGI:3054601, MGI:MGI:3807344, MGI:MGI:4397493, MGI:MGI:76276 NCBI chr31:38,915,872...38,957,484 JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr14:22,991,469...23,153,333
Ensembl chr14:22,993,286...23,153,305
JBrowse link
G COL2A1 collagen type II alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G COL4A1 collagen type IV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666
JBrowse link
G COL4A2 collagen type IV alpha 2 chain ISO (MGI:MGI:2157737|PMID:11732842), (MGI:MGI:3776221|PMID:16041630), (MGI:MGI:3807344|PMID:18757743) RGD
UniProtKB
PMID:11470186, PMID:11732842, PMID:16041630, PMID:18757743 MGI:MGI:2157737, MGI:MGI:3776221, MGI:MGI:3807344, RGD:11556219 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297
JBrowse link
G COL4A3 collagen type IV alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782
JBrowse link
G COL4A4 collagen type IV alpha 4 chain ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000044 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189
JBrowse link
G COL4A5 collagen type IV alpha 5 chain IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000044 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679
JBrowse link
G COL4A6 collagen type IV alpha 6 chain IEA UniProt GO_REF:0000044 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703
JBrowse link
G COL5A1 collagen type V alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
JBrowse link
G COL7A1 collagen type VII alpha 1 chain ISO (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:4397493|PMID:19651211) MGI PMID:18757743, PMID:19651211 MGI:MGI:3807344, MGI:MGI:4397493 NCBI chr20:40,519,121...40,550,305
Ensembl chr20:40,519,378...40,552,935
JBrowse link
G COL9A1 collagen type IX alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:32,763,782...32,847,456
Ensembl chr12:32,764,496...32,847,574
JBrowse link
G COL9A3 collagen type IX alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:46,653,400...46,669,183
Ensembl chr24:46,662,376...46,667,884
JBrowse link
G DAG1 dystroglycan 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:39,707,672...39,779,094
Ensembl chr20:39,708,053...39,778,550
JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 IEA Ensembl GO_REF:0000107 NCBI chr33:30,016,323...30,253,180
Ensembl chr33:30,016,600...30,253,547
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 ISO RGD PMID:18803302 RGD:10401659 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187
JBrowse link
G EFNA5 ephrin A5 IEA Ensembl GO_REF:0000107 NCBI chr 3:4,272,138...4,546,527
Ensembl chr 3:4,272,518...4,542,049
JBrowse link
G EGFL6 EGF like domain multiple 6 IEA Ensembl GO_REF:0000107 NCBI chr  X:9,944,648...10,062,699
Ensembl chr  X:9,995,846...10,062,266
JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 4:70,391,657...70,574,629
Ensembl chr 4:70,392,330...70,575,225
JBrowse link
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 ISO (MGI:MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:MGI:2178511 NCBI chr28:9,181,851...9,311,835
Ensembl chr28:9,211,050...9,323,939
JBrowse link
G ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:48,589,408...48,594,852
Ensembl chr 9:48,570,891...48,594,452
JBrowse link
G FBLN1 fibulin 1 IEA Ensembl GO_REF:0000107 NCBI chr10:20,498,097...20,564,776
Ensembl chr10:20,498,567...20,627,836
JBrowse link
G FBN1 fibrillin 1 IEA Ensembl GO_REF:0000107 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FGF9 fibroblast growth factor 9 ISO ovarian granulosa cells and follicles; seminiferous tubules RGD PMID:17494997 RGD:2289861 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FN1 fibronectin 1 IEA Ensembl GO_REF:0000107 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123
JBrowse link
G FRAS1 Fraser extracellular matrix complex subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr32:2,558,442...2,993,199
Ensembl chr32:2,558,354...2,991,063
JBrowse link
G FREM1 FRAS1 related extracellular matrix 1 IEA Ensembl GO_REF:0000107 NCBI chr11:35,174,390...35,338,983
Ensembl chr11:35,176,934...35,310,335
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 IEA Ensembl GO_REF:0000107 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456
JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:11311527 RGD:5490519 NCBI chr28:16,569,421...16,579,239
Ensembl chr28:16,569,066...16,619,880
JBrowse link
G HMCN1 hemicentin 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:18,798,802...19,254,847
Ensembl chr 7:18,798,796...19,253,786
JBrowse link
G HMCN2 hemicentin 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:53,486,151...53,633,340
Ensembl chr 9:53,485,760...53,633,808
JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724
JBrowse link
G ITGA6 integrin subunit alpha 6 IEA Ensembl GO_REF:0000107 NCBI chr36:16,777,363...16,858,725
Ensembl chr36:16,776,863...16,855,449
JBrowse link
G ITGB1 integrin subunit beta 1 ISO RGD PMID:9202984, PMID:18596883 RGD:1581320, RGD:2325689 NCBI chr 2:3,728,472...3,757,696
Ensembl chr 2:3,670,596...3,756,961
JBrowse link
G ITGB4 integrin subunit beta 4 ISO (MGI:MGI:3692798|PMID:17011173) MGI PMID:17011173 MGI:MGI:3692798 NCBI chr 9:4,825,148...4,855,266
Ensembl chr 9:4,825,292...4,855,820
JBrowse link
G LAMA1 laminin subunit alpha 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151
JBrowse link
G LAMA2 laminin subunit alpha 2 IEA UniProt GO_REF:0000044 NCBI chr 1:67,645,461...68,096,506
Ensembl chr 1:67,611,122...68,095,914
JBrowse link
G LAMA3 laminin subunit alpha 3 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268
JBrowse link
G LAMA4 laminin subunit alpha 4 IEA Ensembl GO_REF:0000107 NCBI chr12:68,535,614...68,639,115
Ensembl chr12:68,535,860...68,678,762
JBrowse link
G LAMA5 laminin subunit alpha 5 ISO (PMID:14557481)
(MGI:MGI:1097278|PMID:9299121), (MGI:MGI:1101275|PMID:9396756), (MGI:MGI:1278097|PMID:9735344), (MGI:MGI:2150219|PMID:11507772), (MGI:MGI:2181263|PMID:12051813), (MGI:MGI:2182206|PMID:8707838), (MGI:MGI:2662649|PMID:12743034), (MGI:MGI:2670559|PMID:12921739), (MGI:MGI:2678847|PMID:14568553), (MGI:MGI:3579951|PMID:15895400), (MGI:MGI:3664526|PMID:16886065), (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:4397493|PMID:19651211), (MGI:MGI:5427748|PMID:22665518)
UniProtKB
MGI
PMID:8707838, PMID:9299121, PMID:9396756, PMID:9735344, PMID:11507772, PMID:12051813, PMID:12743034, PMID:12921739, PMID:14557481, PMID:14568553, PMID:15895400, PMID:16886065, PMID:18757743, PMID:19651211, PMID:22665518 MGI:MGI:1097278, MGI:MGI:1101275, MGI:MGI:1278097, MGI:MGI:2150219, MGI:MGI:2181263, MGI:MGI:2182206, MGI:MGI:2662649, MGI:MGI:2670559, MGI:MGI:2678847, MGI:MGI:3579951, MGI:MGI:3664526, MGI:MGI:3807344, MGI:MGI:4397493, MGI:MGI:5427748 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB1 laminin subunit beta 1 ISO (PMID:14557481), (PMID:2099832)
(MGI:MGI:1095193|PMID:9264260), (MGI:MGI:1101275|PMID:9396756), (MGI:MGI:2662649|PMID:12743034), (MGI:MGI:3045829|PMID:15102706), (MGI:MGI:3579951|PMID:15895400), (MGI:MGI:3610934|PMID:12631063), (MGI:MGI:3776221|PMID:16041630), (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:4441265|PMID:16631359), (MGI:MGI:52425|PMID:1292752)
UniProtKB
UniProt
PMID:1292752, PMID:2099832, PMID:9264260, PMID:9396756, PMID:12631063, PMID:12743034, PMID:14557481, PMID:15102706, PMID:15895400, PMID:16041630, PMID:16631359, PMID:18757743 MGI:MGI:1095193, MGI:MGI:1101275, MGI:MGI:2662649, MGI:MGI:3045829, MGI:MGI:3579951, MGI:MGI:3610934, MGI:MGI:3776221, MGI:MGI:3807344, MGI:MGI:4441265, MGI:MGI:52425 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMB2 laminin subunit beta 2 ISO (PMID:10964500), (PMID:14557481), (PMID:2099832)
(MGI:MGI:3776221|PMID:16041630), (MGI:MGI:75217|PMID:7670489)
UniProtKB
MGI
PMID:2099832, PMID:7670489, PMID:10964500, PMID:14557481, PMID:16041630 MGI:MGI:3776221, MGI:MGI:75217 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523
JBrowse link
G LAMB3 laminin subunit beta 3 ISO (MGI:MGI:1095193|PMID:9264260), (MGI:MGI:3807344|PMID:18757743), (MGI:MGI:65651|PMID:8012114) MGI PMID:8012114, PMID:9264260, PMID:18757743 MGI:MGI:1095193, MGI:MGI:3807344, MGI:MGI:65651 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
JBrowse link
G LAMB4 laminin subunit beta 4 IEA UniProt GO_REF:0000044 NCBI chr18:12,517,124...12,609,253
Ensembl chr18:12,509,774...12,608,862
JBrowse link
G LAMC1 laminin subunit gamma 1 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000044 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000
JBrowse link
G LAMC2 laminin subunit gamma 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085
JBrowse link
G LAMC3 laminin subunit gamma 3 IEA UniProt GO_REF:0000044 NCBI chr 9:52,970,313...53,028,817
Ensembl chr 9:52,970,306...53,028,821
JBrowse link
G LOC477072 serotransferrin ISO RGD PMID:1723977 RGD:1625719 NCBI chr23:30,658,250...30,683,816
Ensembl chr23:30,595,704...30,683,845
JBrowse link
G LOC607874 cystatin-C-like ISO RGD PMID:15872057 RGD:2306505 NCBI chr23:49,562...53,618 JBrowse link
G LOC612942 myb/SANT-like DNA-binding domain-containing protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:57,331,085...57,453,023
Ensembl chr11:57,331,079...57,452,399
JBrowse link
G LOXL1 lysyl oxidase like 1 ISO RGD PMID:22382377 RGD:7394733 NCBI chr30:37,191,201...37,204,163
Ensembl chr30:37,183,128...37,204,058
JBrowse link
G LOXL2 lysyl oxidase like 2 ISO PMID:21835952 UniProt PMID:21835952 RGD:8553848 NCBI chr25:34,095,858...34,186,775
Ensembl chr25:34,126,335...34,185,969
JBrowse link
G MATN2 matrilin 2 IEA Ensembl GO_REF:0000107 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994
JBrowse link
G MEGF9 multiple EGF like domains 9 ISO (MGI:MGI:3699792|PMID:16981854) MGI PMID:16981854 MGI:MGI:3699792 NCBI chr11:73,716,395...73,793,072 JBrowse link
G MMRN2 multimerin 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 4:34,577,072...34,604,521
Ensembl chr 4:34,589,597...34,605,576
JBrowse link
G NID1 nidogen 1 IEA UniProt GO_REF:0000044 NCBI chr 4:3,935,218...4,018,133
Ensembl chr 4:3,935,223...4,017,300
JBrowse link
G NID2 nidogen 2 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000044 NCBI chr 8:28,240,427...28,300,729
Ensembl chr 8:28,102,780...28,300,507
JBrowse link
G NPNT nephronectin IEA Ensembl GO_REF:0000107 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275
JBrowse link
G NTN1 netrin 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 5:33,654,723...33,825,832
Ensembl chr 5:33,637,142...33,825,899
JBrowse link
G NTN3 netrin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:38,558,942...38,561,437
Ensembl chr 6:38,558,150...38,561,323
JBrowse link
G NTN4 netrin 4 IEA Ensembl GO_REF:0000107 NCBI chr15:35,527,491...35,650,170
Ensembl chr15:35,528,133...35,649,566
JBrowse link
G NTN5 netrin 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:107,651,495...107,653,904
Ensembl chr 1:107,647,674...107,655,020
JBrowse link
G P3H1 prolyl 3-hydroxylase 1 ISO PMID:10455179 MGI PMID:10455179 RGD:633221 NCBI chr15:603,436...621,839
Ensembl chr15:603,329...621,568
JBrowse link
G P3H2 prolyl 3-hydroxylase 2 IEA Ensembl GO_REF:0000107 NCBI chr34:22,035,124...22,185,146
Ensembl chr34:22,023,068...22,185,026
JBrowse link
G PAPLN papilin, proteoglycan like sulfated glycoprotein ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 8:46,587,197...46,620,381
Ensembl chr 8:46,592,854...46,618,612
JBrowse link
G PTN pleiotrophin ISO RGD PMID:9990431 RGD:10044215 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814
JBrowse link
G RELL2 RELT like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:36,598,175...36,602,607
Ensembl chr 2:36,599,149...36,602,020
JBrowse link
G RPSA ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chr23:9,070,953...9,077,058
Ensembl chr23:9,070,953...9,077,057
JBrowse link
G RUNX1 RUNX family transcription factor 1 ISO (MGI:MGI:3692798|PMID:17011173) MGI PMID:17011173 MGI:MGI:3692798 NCBI chr31:30,170,859...30,420,344
Ensembl chr31:30,170,605...30,420,839
JBrowse link
G SERPINF1 serpin family F member 1 ISO RGD PMID:15616035 RGD:1359799 NCBI chr 9:45,891,368...45,902,768
Ensembl chr 9:45,891,410...45,902,765
JBrowse link
G SMC3 structural maintenance of chromosomes 3 ISO RGD PMID:9015313 RGD:61563 NCBI chr28:21,889,690...21,928,367
Ensembl chr28:21,889,662...21,928,034
JBrowse link
G SMOC1 SPARC related modular calcium binding 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:43,608,511...43,763,262
Ensembl chr 8:43,607,634...43,763,274
JBrowse link
G SMOC2 SPARC related modular calcium binding 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G SPARC secreted protein acidic and cysteine rich IEA UniProt GO_REF:0000044 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711
JBrowse link
G SPN sialophorin ISO (MGI:MGI:66056|PMID:7514104) MGI PMID:7514104 MGI:MGI:66056 NCBI chr 6:17,770,303...17,774,946 JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:16479080 RGD:2302094 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFBI transforming growth factor beta induced ISO RGD PMID:12911551 RGD:1304421 NCBI chr11:23,932,038...23,971,983
Ensembl chr11:23,938,453...23,971,607
JBrowse link
G THBS2 thrombospondin 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:56,402,519...56,429,975
Ensembl chr 1:56,402,524...56,451,892
JBrowse link
G THBS4 thrombospondin 4 IEA Ensembl GO_REF:0000107 NCBI chr 3:26,945,001...26,982,224
Ensembl chr 3:26,945,081...26,988,597
JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 ISO (MGI:MGI:2675517|PMID:12950084) RGD
MGI
PMID:9579471, PMID:12950084 MGI:MGI:2675517, RGD:2290365 NCBI chr  X:41,201,623...41,205,314
Ensembl chr  X:41,201,638...41,205,310
JBrowse link
G TIMP2 TIMP metallopeptidase inhibitor 2 ISO (MGI:MGI:2675517|PMID:12950084) MGI PMID:12950084 MGI:MGI:2675517 NCBI chr 9:2,521,882...2,533,883
Ensembl chr 9:2,521,882...2,533,989
JBrowse link
G TIMP3 TIMP metallopeptidase inhibitor 3 ISO (MGI:MGI:2675517|PMID:12950084) MGI PMID:12950084 MGI:MGI:2675517 NCBI chr10:30,627,154...30,681,520
Ensembl chr10:30,627,154...30,694,288
JBrowse link
G TINAG tubulointerstitial nephritis antigen IEA Ensembl GO_REF:0000107 NCBI chr12:21,787,042...21,879,867
Ensembl chr12:21,786,669...21,879,091
JBrowse link
G TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:2,414,208...2,635,283
Ensembl chr37:2,414,440...2,635,431
JBrowse link
G TNC tenascin C IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G USH2A usherin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444
JBrowse link
G VEGFA vascular endothelial growth factor A ISO RGD PMID:11940521 RGD:628330 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
JBrowse link
G VTN vitronectin ISO RGD PMID:11728964 RGD:10003096 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864
JBrowse link
G VWA1 von Willebrand factor A domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502
JBrowse link
G VWA2 von Willebrand factor A domain containing 2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr28:25,089,499...25,136,879
Ensembl chr28:25,089,499...25,136,893
JBrowse link
G VWC2 von Willebrand factor C domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr18:1,248,612...1,350,965
Ensembl chr18:1,257,357...1,350,856
JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 9:26,183,852...26,199,927
Ensembl chr 9:26,183,852...26,199,927
JBrowse link
G COL1A2 collagen type I alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:19,883,731...19,919,527
Ensembl chr14:19,883,868...19,919,527
JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL4A1 collagen type IV alpha 1 chain IEA Ensembl GO_REF:0000107 NCBI chr22:58,511,210...58,651,949
Ensembl chr22:58,512,212...58,588,666
JBrowse link
G COL4A2 collagen type IV alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:58,656,579...58,820,560
Ensembl chr22:58,697,175...58,773,297
JBrowse link
G COL4A3 collagen type IV alpha 3 chain IEA Ensembl GO_REF:0000107 NCBI chr25:39,975,547...40,106,833
Ensembl chr25:39,975,586...40,104,782
JBrowse link
G COL4A4 collagen type IV alpha 4 chain ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr25:39,849,680...39,976,035
Ensembl chr25:39,854,388...39,976,189
JBrowse link
G COL4A5 collagen type IV alpha 5 chain IEA Ensembl GO_REF:0000107 NCBI chr  X:81,982,119...82,248,428
Ensembl chr  X:81,982,275...82,247,679
JBrowse link
G COL4A6 collagen type IV alpha 6 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:81,690,047...81,981,005
Ensembl chr  X:81,691,417...81,980,703
JBrowse link
G LOC609026 C1q and TNF related 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:14,735,370...14,748,054 JBrowse link
G OTOL1 otolin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr34:27,405,456...27,454,726
Ensembl chr34:27,413,694...27,455,023
JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL16A1 collagen type XVI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:69,410,283...69,459,382
Ensembl chr 2:69,410,155...69,459,335
JBrowse link
G COL5A1 collagen type V alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
JBrowse link
G COL5A2 collagen type V alpha 2 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:30,538,863...30,677,450
Ensembl chr36:30,540,229...30,691,564
JBrowse link
G COL5A3 collagen type V alpha 3 chain IEA Ensembl GO_REF:0000107 NCBI chr20:51,037,604...51,075,220
Ensembl chr20:51,037,621...51,074,993
JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL12A1 collagen type XII alpha 1 chain ISO RGD PMID:10419532 RGD:727275 NCBI chr12:36,720,686...36,838,321
Ensembl chr12:36,646,408...36,838,622
JBrowse link
collagen-containing extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 ISO RGD PMID:15777654 RGD:9681749 NCBI chr31:22,169,821...22,178,879
Ensembl chr31:22,170,381...22,178,945
JBrowse link
G ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 ISO (PMID:21402694) UniProt PMID:21402694 NCBI chr20:53,090,819...53,110,533
Ensembl chr20:53,090,800...53,108,493
JBrowse link
G ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 IEA InterPro GO_REF:0000002 NCBI chr11:2,279,983...2,504,630
Ensembl chr11:2,280,108...2,502,635
JBrowse link
G ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 IEA InterPro GO_REF:0000002 NCBI chr 5:4,479,874...4,517,211
Ensembl chr 5:4,496,791...4,516,594
JBrowse link
G AGRN agrin ISO (PMID:17628813) UniProt PMID:17628813 NCBI chr 5:56,239,621...56,273,679
Ensembl chr 5:56,239,701...56,272,745
JBrowse link
G AHSG alpha 2-HS glycoprotein ISO RGD PMID:7794128 RGD:1626075 NCBI chr34:19,221,034...19,228,866
Ensembl chr34:19,221,107...19,228,716
JBrowse link
G AMELX amelogenin X-linked IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr  X:7,822,513...7,828,692
Ensembl chr  X:7,822,859...7,830,351
JBrowse link
G ANGPT1 angiopoietin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:8,068,920...8,312,090
Ensembl chr13:8,048,205...8,311,618
JBrowse link
G ANGPT2 angiopoietin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:58,404,049...58,458,344
Ensembl chr16:58,405,259...58,457,701
JBrowse link
G ANGPT4 angiopoietin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:20,021,625...20,068,805
Ensembl chr24:20,022,322...20,064,023
JBrowse link
G ANGPTL1 angiopoietin like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,919,192...20,945,140
Ensembl chr 7:20,919,214...20,940,792
JBrowse link
G ANGPTL2 angiopoietin like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:56,184,298...56,220,309
Ensembl chr 9:56,198,423...56,218,751
JBrowse link
G ANGPTL3 angiopoietin like 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:47,524,390...47,532,931
Ensembl chr 5:47,525,365...47,532,899
JBrowse link
G ANGPTL4 angiopoietin like 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:52,942,090...52,948,126
Ensembl chr20:52,942,259...52,947,475
JBrowse link
G ANGPTL5 angiopoietin like 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:29,543,987...29,682,998
Ensembl chr 5:29,544,234...29,679,594
JBrowse link
G ANGPTL6 angiopoietin like 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:50,953,029...50,961,598
Ensembl chr20:50,953,498...50,961,576
JBrowse link
G ANGPTL7 angiopoietin like 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,876,881...84,883,582
Ensembl chr 2:84,877,682...84,883,160
JBrowse link
G ANO2 anoctamin 2 IEA Ensembl GO_REF:0000107 NCBI chr27:38,976,761...39,320,764
Ensembl chr27:38,833,837...39,320,142
JBrowse link
G B9D2 B9 domain containing 2 ISO RGD PMID:24224514 RGD:11073670 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BGLAP bone gamma-carboxyglutamate protein IDA (PMID:8101026), (PMID:8218200) CAFA PMID:8101026, PMID:8218200 NCBI chr 7:41,630,092...41,630,976
Ensembl chr 7:41,630,098...41,665,791
JBrowse link
G BMP7 bone morphogenetic protein 7 ISO RGD PMID:9626398 RGD:2289041 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CALR calreticulin ISO RGD PMID:12782144 RGD:2326184 NCBI chr20:49,251,390...49,255,291
Ensembl chr20:49,251,777...49,255,245
JBrowse link
G CCN3 cellular communication network factor 3 ISO RGD PMID:19286457 RGD:2306292 NCBI chr13:18,507,586...18,515,755
Ensembl chr13:18,507,580...18,514,619
JBrowse link
G CHADL chondroadherin like IEA Ensembl GO_REF:0000107 NCBI chr10:23,992,848...24,006,492
Ensembl chr10:23,953,912...24,003,162
JBrowse link
G CILP cartilage intermediate layer protein IEA Ensembl GO_REF:0000107 NCBI chr30:29,573,072...29,587,601
Ensembl chr30:29,573,184...29,650,883
JBrowse link
G CLU clusterin colocalizes_with ISS BHF-UCL GO_REF:0000024 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563
JBrowse link
G COCH cochlin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:10,215,101...10,230,017
Ensembl chr 8:10,214,536...10,233,550
JBrowse link
G COL10A1 collagen type X alpha 1 chain ISO RGD PMID:7649371 RGD:1298775 NCBI chr12:71,803,372...71,810,049
Ensembl chr12:71,798,692...71,809,399
JBrowse link
G COL11A1 collagen type XI alpha 1 chain ISO RGD PMID:17062562 RGD:1600882 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
JBrowse link
G COL12A1 collagen type XII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:36,720,686...36,838,321
Ensembl chr12:36,646,408...36,838,622
JBrowse link
G COL14A1 collagen type XIV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:19,033,423...19,249,189
Ensembl chr13:19,011,897...19,248,568
JBrowse link
G COL20A1 collagen type XX alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:46,998,645...47,018,410
Ensembl chr24:46,998,138...47,016,401
JBrowse link
G COL21A1 collagen type XXI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:23,359,350...23,587,689
Ensembl chr12:23,360,372...23,529,713
JBrowse link
G COL2A1 collagen type II alpha 1 chain ISO RGD PMID:7649371 RGD:1298775 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G COL3A1 collagen type III alpha 1 chain ISO (PMID:14970208), (PMID:7487954) RGD
UniProt
PMID:7487954, PMID:14970208, PMID:20610530 RGD:7257557 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
JBrowse link
G COL5A1 collagen type V alpha 1 chain ISO (PMID:14970208) UniProt PMID:14970208 NCBI chr 9:50,706,852...50,856,691
Ensembl chr 9:50,770,277...50,854,728
JBrowse link
G COL5A3 collagen type V alpha 3 chain ISO RGD PMID:15383532 RGD:5683638 NCBI chr20:51,037,604...51,075,220
Ensembl chr20:51,037,621...51,074,993
JBrowse link
G COL6A1 collagen type VI alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:39,301,718...39,319,895
Ensembl chr31:39,301,748...39,448,062
JBrowse link
G COL6A3 collagen type VI alpha 3 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:47,971,439...48,052,673
Ensembl chr25:47,971,315...48,052,402
JBrowse link
G COL7A1 collagen type VII alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:40,519,121...40,550,305
Ensembl chr20:40,519,378...40,552,935
JBrowse link
G COMP cartilage oligomeric matrix protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:44,306,813...44,314,575
Ensembl chr20:44,306,859...44,314,625
JBrowse link
G DMBT1 deleted in malignant brain tumors 1 ISO RGD PMID:11121438 RGD:1599784 NCBI chr28:32,198,250...32,286,517
Ensembl chr28:32,219,448...32,286,532
JBrowse link
G DSPP dentin sialophosphoprotein ISO RGD PMID:16776771 RGD:1599799 NCBI chr32:11,017,440...11,022,780 JBrowse link
G ECM1 extracellular matrix protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:59,696,125...59,701,990
Ensembl chr17:59,696,477...59,701,744
JBrowse link
G EFEMP1 EGF containing fibulin extracellular matrix protein 1 IEA InterPro GO_REF:0000002 NCBI chr10:56,632,801...56,694,872
Ensembl chr10:56,579,899...56,787,187
JBrowse link
G ELN elastin IEA InterPro GO_REF:0000002 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
JBrowse link
G EMILIN1 elastin microfibril interfacer 1 ISO (PMID:26462740) UniProt PMID:26462740 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889
JBrowse link
G F2 coagulation factor II, thrombin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:42,782,744...42,799,531
Ensembl chr18:42,782,751...42,799,459
JBrowse link
G F3 coagulation factor III, tissue factor IEA Ensembl GO_REF:0000107 NCBI chr 6:54,709,581...54,720,603
Ensembl chr 6:54,708,471...54,720,607
JBrowse link
G FBLN1 fibulin 1 IEA InterPro GO_REF:0000002 NCBI chr10:20,498,097...20,564,776
Ensembl chr10:20,498,567...20,627,836
JBrowse link
G FBLN2 fibulin 2 IEA InterPro GO_REF:0000002 NCBI chr20:3,874,896...3,935,059
Ensembl chr20:3,874,896...3,934,717
JBrowse link
G FBLN5 fibulin 5 colocalizes_with IEA
ISO
(MGI:MGI:3610795|PMID:15528465) Ensembl
BHF-UCL
PMID:15528465 GO_REF:0000107, MGI:MGI:3610795 NCBI chr 8:1,162,203...1,231,809
Ensembl chr 8:1,162,923...1,231,719
JBrowse link
G FBN1 fibrillin 1 ISO (MGI:MGI:3698678|PMID:17099216), (MGI:MGI:5795811|PMID:24039232) RGD
MGI
PMID:15849235, PMID:17099216, PMID:24039232 MGI:MGI:3698678, MGI:MGI:5795811, RGD:1601147 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FCN2 ficolin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:50,868,942...50,876,001
Ensembl chr 9:50,868,973...50,875,792
JBrowse link
G FGF10 fibroblast growth factor 10 colocalizes_with IEA
ISO
(PMID:17959718) Ensembl
UniProt
PMID:17959718 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 colocalizes_with ISO
IEA
(PMID:17959718) UniProt
Ensembl
PMID:17959718 GO_REF:0000107 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FGL1 fibrinogen like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:41,161,314...41,191,282
Ensembl chr16:41,161,394...41,179,791
JBrowse link
G FGL2 fibrinogen like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:17,328,794...17,335,429
Ensembl chr18:17,331,780...17,335,401
JBrowse link
G FIBCD1 fibrinogen C domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:53,073,859...53,106,266
Ensembl chr 9:53,073,027...53,103,937
JBrowse link
G FMOD fibromodulin IEA InterPro GO_REF:0000002 NCBI chr38:102,106...112,267
Ensembl chr38:103,230...112,154
JBrowse link
G FN1 fibronectin 1 ISO (PMID:16157329), (PMID:1632457) UniProt PMID:1632457, PMID:16157329 NCBI chr37:22,456,854...22,522,410
Ensembl chr37:22,420,428...22,523,123
JBrowse link
G GPC1 glypican 1 IEA InterPro GO_REF:0000002 NCBI chr25:50,484,554...50,492,940
Ensembl chr25:50,482,071...50,515,877
JBrowse link
G GPC2 glypican 2 IEA InterPro GO_REF:0000002 NCBI chr 6:9,354,181...9,361,361
Ensembl chr 6:9,354,535...9,361,375
JBrowse link
G GPC3 glypican 3 IEA InterPro GO_REF:0000002 NCBI chr  X:104,313,426...104,751,215
Ensembl chr  X:104,313,591...104,751,756
JBrowse link
G GPC4 glypican 4 IEA InterPro GO_REF:0000002 NCBI chr  X:104,098,316...104,215,883
Ensembl chr  X:104,100,571...104,216,103
JBrowse link
G GPC5 glypican 5 IEA InterPro GO_REF:0000002 NCBI chr22:42,526,426...43,873,992
Ensembl chr22:42,526,054...43,870,405
JBrowse link
G GPC6 glypican 6 IEA InterPro GO_REF:0000002 NCBI chr22:44,154,690...45,237,398
Ensembl chr22:44,154,944...45,233,549
JBrowse link
G HSP90AA1 heat shock protein 90 alpha family class A member 1 ISO RGD PMID:15497505 RGD:2316936 NCBI chr 8:70,091,203...70,096,107
Ensembl chr 8:70,092,217...70,095,243
JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 ISO RGD PMID:15928048 RGD:1624263 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724
JBrowse link
G HTRA1 HtrA serine peptidase 1 ISO dentin matrix RGD PMID:22595117 RGD:7394756 NCBI chr28:32,133,779...32,157,835
Ensembl chr28:32,132,547...32,157,409
JBrowse link
G LAMB1 laminin subunit beta 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMC1 laminin subunit gamma 1 ISO RGD PMID:15928048 RGD:1624263 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000
JBrowse link
G LOC100688853 phospholipid scramblase 1-like IEA Ensembl GO_REF:0000107 NCBI chr23:41,591,425...41,625,918
Ensembl chr23:41,599,843...41,669,112
JBrowse link
G LOC607055 angiopoietin-related protein 5-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:17,040,257...17,042,108 JBrowse link
G LOC611500 phospholipid scramblase 1 IEA Ensembl GO_REF:0000107 NCBI chr23:41,639,938...41,668,972
Ensembl chr23:41,599,843...41,669,112
JBrowse link
G LRRC15 leucine rich repeat containing 15 colocalizes_with IEA
ISO
(PMID:16098915) Ensembl
UniProt
PMID:16098915 GO_REF:0000107 NCBI chr33:31,332,502...31,345,895
Ensembl chr33:31,332,496...31,342,583
JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779
JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 IEA Ensembl GO_REF:0000107 NCBI chr18:51,653,783...51,667,793
Ensembl chr18:51,659,098...51,667,433
JBrowse link
G LTBP4 latent transforming growth factor beta binding protein 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:113,124,109...113,152,283
Ensembl chr 1:113,124,109...113,150,442
JBrowse link
G MATN2 matrilin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:149,108...296,005
Ensembl chr13:149,095...295,994
JBrowse link
G MATN3 matrilin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:15,037,175...15,054,451
Ensembl chr17:15,037,995...15,054,436
JBrowse link
G MATN4 matrilin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:32,601,175...32,614,109
Ensembl chr24:32,599,508...32,613,872
JBrowse link
G MFAP4 microfibril associated protein 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:40,828,548...40,831,757
Ensembl chr 5:40,828,282...40,831,495
JBrowse link
G MGP matrix Gla protein IEA InterPro GO_REF:0000002 NCBI chr27:31,735,301...31,738,673
Ensembl chr27:31,734,660...31,738,673
JBrowse link
G MYOC myocilin ISS UniProt GO_REF:0000024 NCBI chr 7:27,335,314...27,346,821
Ensembl chr 7:27,335,314...27,346,820
JBrowse link
G NDP norrin cystine knot growth factor NDP IEA Ensembl GO_REF:0000107 NCBI chr  X:37,949,560...37,975,573
Ensembl chr  X:37,950,489...37,975,346
JBrowse link
G NPNT nephronectin ISO (MGI:MGI:4947862|PMID:21335239) BHF-UCL PMID:21335239 MGI:MGI:4947862 NCBI chr32:26,706,147...26,781,792
Ensembl chr32:26,705,476...26,781,275
JBrowse link
G OMD osteomodulin IEA InterPro GO_REF:0000002 NCBI chr 1:98,923,507...98,933,751
Ensembl chr 1:98,929,274...98,931,219
JBrowse link
G PARP16 poly(ADP-ribose) polymerase family member 16 IEA Ensembl GO_REF:0000107 NCBI chr30:29,626,675...29,649,992
Ensembl chr30:29,573,184...29,650,883
JBrowse link
G PCSK6 proprotein convertase subtilisin/kexin type 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:39,582,804...39,768,838
Ensembl chr 3:39,582,819...39,767,929
JBrowse link
G PLAT plasminogen activator, tissue type NOT ISO (PMID:1632457) BHF-UCL PMID:1632457 NCBI chr16:23,469,590...23,496,013 JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:8,664,135...8,671,637
Ensembl chr 6:8,664,358...8,671,620
JBrowse link
G PODNL1 podocan like 1 IEA Ensembl GO_REF:0000107 NCBI chr20:48,543,572...48,548,689
Ensembl chr20:48,526,786...48,548,689
JBrowse link
G POSTN periostin IEA Ensembl GO_REF:0000107 NCBI chr25:3,167,319...3,208,970
Ensembl chr25:3,167,359...3,208,411
JBrowse link
G PRELP proline and arginine rich end leucine rich repeat protein IEA InterPro GO_REF:0000002 NCBI chr38:198,681...212,320
Ensembl chr38:198,583...209,937
JBrowse link
G PXDN peroxidasin IEA Ensembl GO_REF:0000107 NCBI chr17:834,625...891,551
Ensembl chr17:836,434...875,117
JBrowse link
G RARRES2 retinoic acid receptor responder 2 IEA Ensembl GO_REF:0000107 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926
JBrowse link
G RPSA ribosomal protein SA ISO RGD PMID:11553521 RGD:2299067 NCBI chr23:9,070,953...9,077,058
Ensembl chr23:9,070,953...9,077,057
JBrowse link
G SERPINE1 serpin family E member 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:8,719,547...8,727,160
Ensembl chr 6:8,720,825...8,726,301
JBrowse link
G SERPINE2 serpin family E member 2 IEA Ensembl GO_REF:0000107 NCBI chr37:29,699,551...29,750,151
Ensembl chr37:29,700,024...29,724,228
JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (PMID:10347172), (PMID:9192640) BHF-UCL PMID:9192640, PMID:10347172 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G SFRP2 secreted frizzled related protein 2 IDA (PMID:14709558) BHF-UCL PMID:14709558 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
G SMOC2 SPARC related modular calcium binding 2 IEA InterPro GO_REF:0000002 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G SNORC secondary ossification center associated regulator of chondrocyte maturation ISO (MGI:MGI:6103145|PMID:28323137) UniProt PMID:28323137 MGI:MGI:6103145 NCBI chr25:44,453,804...44,472,159
Ensembl chr25:44,466,852...44,470,935
JBrowse link
G SOD3 superoxide dismutase 3 colocalizes_with ISO (MGI:MGI:3610795|PMID:15528465)
(PMID:9699963)
RGD
BHF-UCL
UniProt
PMID:9699963, PMID:15528465, PMID:16372329 MGI:MGI:3610795, RGD:1581086 NCBI chr 3:85,382,698...85,387,144
Ensembl chr 3:85,382,484...85,387,455
JBrowse link
G SPARCL1 SPARC like 1 IEA InterPro GO_REF:0000002 NCBI chr32:10,900,072...10,944,392
Ensembl chr32:10,900,283...10,944,449
JBrowse link
G SSC5D scavenger receptor cysteine rich family member with 5 domains IEA Ensembl GO_REF:0000107 NCBI chr 1:102,195,426...102,222,352
Ensembl chr 1:102,196,890...102,221,444
JBrowse link
G TECTA tectorin alpha IEA InterPro GO_REF:0000002 NCBI chr 5:12,879,963...12,949,211
Ensembl chr 5:12,879,951...12,949,147
JBrowse link
G TGFB2 transforming growth factor beta 2 IEA Ensembl GO_REF:0000107 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFB3 transforming growth factor beta 3 IEA Ensembl GO_REF:0000107 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816
JBrowse link
G THBS1 thrombospondin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:6,770,212...6,786,875
Ensembl chr30:6,769,470...6,784,915
JBrowse link
G THBS2 thrombospondin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:56,402,519...56,429,975
Ensembl chr 1:56,402,524...56,451,892
JBrowse link
G THBS3 thrombospondin 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:42,327,899...42,338,177
Ensembl chr 7:42,328,592...42,338,171
JBrowse link
G THBS4 thrombospondin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:26,945,001...26,982,224
Ensembl chr 3:26,945,081...26,988,597
JBrowse link
G TNC tenascin C IEA InterPro GO_REF:0000002 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G TNN tenascin N IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:24,246,481...24,342,686
Ensembl chr 7:24,230,930...24,308,520
JBrowse link
G TNR tenascin R IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530
JBrowse link
G TNXB tenascin XB IEA InterPro GO_REF:0000002 NCBI chr12:1,453,227...1,510,171
Ensembl chr12:1,453,260...1,509,749
JBrowse link
G VCAN versican ISO RGD PMID:12586779 RGD:1299255 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192
JBrowse link
G VIT vitrin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:29,142,924...29,259,800
Ensembl chr17:29,143,069...29,243,406
JBrowse link
G VTN vitronectin IEA Ensembl GO_REF:0000107 NCBI chr 9:42,617,860...42,620,825
Ensembl chr 9:42,614,941...42,630,864
JBrowse link
G VWA2 von Willebrand factor A domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:25,089,499...25,136,879
Ensembl chr28:25,089,499...25,136,893
JBrowse link
G VWF von Willebrand factor ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr27:38,834,812...38,972,614
Ensembl chr27:38,833,837...39,320,142
JBrowse link
G WNT2 Wnt family member 2 IEA Ensembl GO_REF:0000107 NCBI chr14:56,123,735...56,172,113
Ensembl chr14:56,129,248...56,172,069
JBrowse link
G ZG16 zymogen granule protein 16 IEA Ensembl GO_REF:0000107 NCBI chr 6:17,840,430...17,842,008
Ensembl chr 6:17,839,553...17,842,006
JBrowse link
G ZP1 zona pellucida glycoprotein 1 ISO (MGI:MGI:2177349|PMID:11906903) UniProt PMID:11906903 MGI:MGI:2177349 NCBI chr18:55,405,991...55,416,033 JBrowse link
G ZP2 zona pellucida glycoprotein 2 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:24,230,202...24,242,441
Ensembl chr 6:24,230,201...24,242,451
JBrowse link
G ZP3 zona pellucida glycoprotein 3 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:7,586,212...7,594,610
Ensembl chr 6:7,585,970...7,594,610
JBrowse link
cone matrix sheath term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBP3 retinol binding protein 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,974,559...34,983,460
Ensembl chr 4:34,974,638...34,982,907
JBrowse link
elastic fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELN elastin IEA Ensembl GO_REF:0000107 NCBI chr 6:6,299,524...6,331,425
Ensembl chr 6:6,300,727...6,331,325
JBrowse link
G FBLN1 fibulin 1 IEA Ensembl GO_REF:0000107 NCBI chr10:20,498,097...20,564,776
Ensembl chr10:20,498,567...20,627,836
JBrowse link
G FBLN5 fibulin 5 colocalizes_with IEA
ISO
(MGI:MGI:2681471|PMID:11805834) Ensembl
BHF-UCL
PMID:11805834 GO_REF:0000107, MGI:MGI:2681471 NCBI chr 8:1,162,203...1,231,809
Ensembl chr 8:1,162,923...1,231,719
JBrowse link
G MFAP4 microfibril associated protein 4 ISO (PMID:10424889) BHF-UCL PMID:10424889 NCBI chr 5:40,828,548...40,831,757
Ensembl chr 5:40,828,282...40,831,495
JBrowse link
EMILIN complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMILIN1 elastin microfibril interfacer 1 IEA Ensembl GO_REF:0000107 NCBI chr17:21,071,502...21,078,888
Ensembl chr17:21,071,580...21,078,889
JBrowse link
extracellular matrix of synaptic cleft term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSD17B11 hydroxysteroid 17-beta dehydrogenase 11 ISO PMID:17151913 SynGO PMID:17151913 RGD:13702411 NCBI chr32:10,821,332...10,854,541
Ensembl chr32:10,794,617...10,854,193
JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain ISO (MGI:MGI:3709703|PMID:17331945) MGI PMID:17331945 MGI:MGI:3709703 NCBI chr11:68,413,101...68,548,408
Ensembl chr11:68,420,263...68,546,947
JBrowse link
G LUM lumican IEA Ensembl GO_REF:0000107 NCBI chr15:31,792,872...31,800,444
Ensembl chr15:31,793,233...31,800,912
JBrowse link
interphotoreceptor matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IMPG1 interphotoreceptor matrix proteoglycan 1 IEA UniProt GO_REF:0000044 NCBI chr12:37,506,511...37,614,683
Ensembl chr12:37,507,525...37,638,250
JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 IEA UniProt GO_REF:0000044 NCBI chr33:7,706,069...7,785,817
Ensembl chr33:7,709,683...7,785,309
JBrowse link
G RBP3 retinol binding protein 3 ISO RGD PMID:8282025 RGD:6893658 NCBI chr 4:34,974,559...34,983,460
Ensembl chr 4:34,974,638...34,982,907
JBrowse link
G RTBDN retbindin IEA UniProt GO_REF:0000044 NCBI chr20:49,324,843...49,337,226
Ensembl chr20:49,334,127...49,337,223
JBrowse link
interstitial matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr33:7,265,804...7,498,973
Ensembl chr33:7,266,685...7,418,106
JBrowse link
G ADAMTSL4 ADAMTS like 4 IEA Ensembl GO_REF:0000107 NCBI chr17:59,736,628...59,747,689
Ensembl chr17:59,736,534...59,746,980
JBrowse link
G C12H6orf15 chromosome 12 C6orf15 homolog ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr12:815,319...817,444
Ensembl chr12:815,483...816,767
JBrowse link
G CCDC80 coiled-coil domain containing 80 IEA Ensembl GO_REF:0000107 NCBI chr33:17,105,086...17,141,380
Ensembl chr33:17,105,086...17,139,896
JBrowse link
G COL14A1 collagen type XIV alpha 1 chain IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:19,033,423...19,249,189
Ensembl chr13:19,011,897...19,248,568
JBrowse link
G ECM2 extracellular matrix protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:98,832,107...98,865,084
Ensembl chr 1:98,832,677...98,864,700
JBrowse link
G EGFLAM EGF like, fibronectin type III and laminin G domains IEA Ensembl GO_REF:0000107 NCBI chr 4:70,391,657...70,574,629
Ensembl chr 4:70,392,330...70,575,225
JBrowse link
G IGF1 insulin like growth factor 1 ISO RGD PMID:15544842 RGD:1580475 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794
JBrowse link
G KAZALD1 Kazal type serine peptidase inhibitor domain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:13,741,085...13,745,426
Ensembl chr28:13,742,322...13,745,119
JBrowse link
G MAMDC2 MAM domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr 1:87,303,230...87,451,197
Ensembl chr 1:87,304,216...87,451,037
JBrowse link
G NAV2 neuron navigator 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr21:41,458,280...42,181,227
Ensembl chr21:41,458,984...42,177,813
JBrowse link
G NEPN nephrocan IEA Ensembl GO_REF:0000107 NCBI chr 1:57,837,927...57,859,346 JBrowse link
G SMOC2 SPARC related modular calcium binding 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:55,826,354...55,986,053
Ensembl chr 1:55,825,666...55,986,052
JBrowse link
G TNC tenascin C IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G VIT vitrin IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:29,142,924...29,259,800
Ensembl chr17:29,143,069...29,243,406
JBrowse link
G VWA1 von Willebrand factor A domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:56,578,256...56,583,552
Ensembl chr 5:56,578,297...56,582,502
JBrowse link
G VWC2 von Willebrand factor C domain containing 2 ISO (MGI:MGI:3807344|PMID:18757743) MGI PMID:18757743 MGI:MGI:3807344 NCBI chr18:1,248,612...1,350,965
Ensembl chr18:1,257,357...1,350,856
JBrowse link
laminin complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 ISO (MGI:MGI:67497|PMID:8034675) MGI PMID:8034675 MGI:MGI:67497 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151
JBrowse link
G LAMB1 laminin subunit beta 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMB2 laminin subunit beta 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523
JBrowse link
G LAMB3 laminin subunit beta 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
JBrowse link
G LAMB4 laminin subunit beta 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:12,517,124...12,609,253
Ensembl chr18:12,509,774...12,608,862
JBrowse link
G NTN4 netrin 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:35,527,491...35,650,170
Ensembl chr15:35,528,133...35,649,566
JBrowse link
G NTNG1 netrin G1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:44,091,368...44,407,118
Ensembl chr 6:44,092,043...44,403,799
JBrowse link
G NTNG2 netrin G2 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 9:51,992,599...52,059,902 JBrowse link
G PMP22 peripheral myelin protein 22 ISO (MGI:MGI:3613258|PMID:16436605) MGI PMID:16436605 MGI:MGI:3613258 NCBI chr 5:38,806,731...38,839,002
Ensembl chr 5:38,807,826...38,838,971
JBrowse link
laminin-1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151
JBrowse link
G LAMB1 laminin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMC1 laminin subunit gamma 1 ISO RGD PMID:8648916 RGD:633159 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000
JBrowse link
laminin-10 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA5 laminin subunit alpha 5 ISO (PMID:10964500)
(MGI:MGI:1097278|PMID:9299121)
UniProtKB
MGI
PMID:9299121, PMID:10964500 MGI:MGI:1097278 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB1 laminin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMC1 laminin subunit gamma 1 ISO (MGI:MGI:1097278|PMID:9299121) MGI PMID:9299121 MGI:MGI:1097278 NCBI chr 7:16,406,421...16,528,372
Ensembl chr 7:16,404,495...16,526,000
JBrowse link
laminin-2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
G LAMC2 laminin subunit gamma 2 ISO RGD PMID:9417868 RGD:633095 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085
JBrowse link
laminin-3 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA1 laminin subunit alpha 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:73,309,383...73,438,543
Ensembl chr 7:73,309,388...73,448,151
JBrowse link
G LAMA3 laminin subunit alpha 3 ISO RGD PMID:8923212 RGD:633107 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268
JBrowse link
G LAMB2 laminin subunit beta 2 IEA Ensembl GO_REF:0000107 NCBI chr20:40,036,967...40,062,628
Ensembl chr20:40,050,157...40,062,523
JBrowse link
laminin-5 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMA3 laminin subunit alpha 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:64,405,719...64,654,910
Ensembl chr 7:64,406,082...64,655,268
JBrowse link
G LAMA5 laminin subunit alpha 5 ISO RGD PMID:9417868 RGD:633095 NCBI chr24:46,315,008...46,351,279 JBrowse link
G LAMB3 laminin subunit beta 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:8,272,326...8,313,322
Ensembl chr 7:8,272,736...8,310,474
JBrowse link
G LAMC2 laminin subunit gamma 2 ISO (MGI:MGI:1095193|PMID:9264260) MGI PMID:9264260 MGI:MGI:1095193 NCBI chr 7:16,543,541...16,625,304
Ensembl chr 7:16,569,086...16,624,085
JBrowse link
laminin-8 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
microfibril term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 ISO (PMID:21402694) UniProtKB PMID:21402694 NCBI chr20:53,090,819...53,110,533
Ensembl chr20:53,090,800...53,108,493
JBrowse link
G ADAMTSL5 ADAMTS like 5 colocalizes_with ISO (PMID:23010571) UniProtKB
MGI
PMID:23010571 NCBI chr20:57,351,242...57,357,934
Ensembl chr20:57,351,575...57,357,520
JBrowse link
G FBN1 fibrillin 1 IEA Ensembl GO_REF:0000107 NCBI chr30:14,640,973...14,864,151
Ensembl chr30:14,640,973...14,864,151
JBrowse link
G FBN2 fibrillin 2 IEA Ensembl GO_REF:0000107 NCBI chr11:17,311,238...17,551,536
Ensembl chr11:17,311,226...17,551,536
JBrowse link
G LOC487628 thrombospondin type-1 domain-containing protein 4 IEA Ensembl GO_REF:0000107 NCBI chr30:35,156,926...35,358,673
Ensembl chr30:35,156,981...35,353,767
JBrowse link
G LTBP1 latent transforming growth factor beta binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:26,129,528...26,521,782
Ensembl chr17:26,130,781...26,521,779
JBrowse link
G MFAP1 microfibril associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr30:10,545,987...10,559,507
Ensembl chr30:10,546,369...10,559,414
JBrowse link
G MFAP2 microfibril associated protein 2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:81,217,197...81,223,726
Ensembl chr 2:81,220,431...81,224,243
JBrowse link
G MFAP4 microfibril associated protein 4 ISO (PMID:22355679) BHF-UCL PMID:22355679 NCBI chr 5:40,828,548...40,831,757
Ensembl chr 5:40,828,282...40,831,495
JBrowse link
G MFAP5 microfibril associated protein 5 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr27:37,028,518...37,042,657
Ensembl chr27:37,028,037...37,040,592
JBrowse link
perineuronal net term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO RGD PMID:18364019 RGD:2315810 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544
JBrowse link
G BCAN brevican ISO MMO:0000669 RGD PMID:16644727 RGD:9589827 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178
JBrowse link
G NCAN neurocan ISO MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr20:43,944,257...43,970,864
Ensembl chr20:43,945,143...43,970,886
JBrowse link
G PTPRZ1 protein tyrosine phosphatase receptor type Z1 IEA Ensembl GO_REF:0000107 NCBI chr14:59,769,553...59,944,111
Ensembl chr14:59,827,650...59,943,315
JBrowse link
G TNR tenascin R IEA Ensembl GO_REF:0000107 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530
JBrowse link
G VCAN versican ISO MMO:0000669,MMO:0000662 RGD PMID:16644727 RGD:9589827 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192
JBrowse link
perisynaptic extracellular matrix term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan ISO (MGI:MGI:6189263|PMID:27615741) SynGO PMID:27615741 MGI:MGI:6189263 NCBI chr 3:51,995,100...52,031,812
Ensembl chr 3:51,969,779...52,031,544
JBrowse link
G BCAN brevican ISO PMID:10414531
PMID:16503162
SynGO PMID:10414531, PMID:16503162 RGD:13702202, RGD:13702210 NCBI chr 7:41,313,578...41,330,178
Ensembl chr 7:41,313,579...41,330,178
JBrowse link
G TNC tenascin C IEA Ensembl GO_REF:0000107 NCBI chr11:69,077,532...69,169,673
Ensembl chr11:69,077,535...69,170,281
JBrowse link
G TNR tenascin R ISO PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr 7:23,721,227...24,125,183
Ensembl chr 7:24,019,095...24,122,530
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16528
    cellular anatomical entity 16432
      extracellular matrix 393
        Ubisch body 0
        adhesive extracellular matrix 0
        biofilm matrix + 0
        chitin-based extracellular matrix 0
        collagen-containing extracellular matrix + 239
        elastic fiber 4
        fibronectin fibril 0
        microfibril 10
        middle lamella 0
        organomineral extracellular matrix 0
        pollen coat 0
        thrombospondin complex 0
Path 2
Term Annotations click to browse term
  cellular_component 16528
    cellular anatomical entity 16432
      extracellular region 1846
        extracellular matrix 393
          Ubisch body 0
          adhesive extracellular matrix 0
          biofilm matrix + 0
          chitin-based extracellular matrix 0
          collagen-containing extracellular matrix + 239
          elastic fiber 4
          fibronectin fibril 0
          microfibril 10
          middle lamella 0
          organomineral extracellular matrix 0
          pollen coat 0
          thrombospondin complex 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.