Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:dsRNA processing
go back to main search page
Accession:GO:0031050 term browser browse the term
Definition:Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function.
Synonyms:related_synonym: double-stranded RNA fragmentation;   dsRNA fragmentation


show annotations for term's descendants       view all columns           Sort by:
 
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCDIN3D BCDIN3 domain containing RNA methyltransferase JBrowse link 27 4,851,156 4,860,322 RGD:13508589
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IL6 interleukin 6 JBrowse link 14 36,474,268 36,478,519 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:9068941
G STAT3 signal transducer and activator of transcription 3 JBrowse link 9 20,539,660 20,614,631 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B9D2 B9 domain containing 2 JBrowse link 1 112,621,832 112,627,726 RGD:9068941
G ESR1 estrogen receptor 1 JBrowse link 1 42,081,952 42,368,544 RGD:13508589
G NCOR1 nuclear receptor corepressor 1 JBrowse link 5 39,687,530 39,837,003 RGD:9068941
G NCOR2 nuclear receptor corepressor 2 JBrowse link 26 5,352,670 5,493,741 RGD:13508589
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 32 22,688,141 22,996,693 RGD:13508589
G TNF tumor necrosis factor JBrowse link 12 1,074,561 1,076,425 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 10 439,163 445,587 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 15 4,972,369 4,984,218 RGD:13508589
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 15 2,669,546 2,708,480 RGD:13508589
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TERT telomerase reverse transcriptase JBrowse link 34 11,288,622 11,307,790 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B9D2 B9 domain containing 2 JBrowse link 1 112,621,832 112,627,726 RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
G DDX5 DEAD-box helicase 5 JBrowse link 9 12,300,706 12,307,931 RGD:13508589
G EGFR epidermal growth factor receptor JBrowse link 18 5,983,669 6,044,092 RGD:13508589
G IL6 interleukin 6 JBrowse link 14 36,474,268 36,478,519 RGD:9068941
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:13508589
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 30 30,683,192 30,760,479 RGD:9068941
G MAP2K2 mitogen-activated protein kinase kinase 2 JBrowse link 20 55,465,460 55,487,629 RGD:9068941
G MYOCD myocardin JBrowse link 5 36,674,476 36,774,435 RGD:9068941
G NR2F1 nuclear receptor subfamily 2 group F member 1 JBrowse link 3 15,707,198 15,716,875 RGD:9068941
G RIPK1 receptor interacting serine/threonine kinase 1 JBrowse link 35 3,367,796 3,407,631 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 7 42,762,021 42,785,192 RGD:13508589
G AGO1 argonaute RISC component 1 JBrowse link 15 6,258,359 6,294,911 RGD:13508589
G AGO2 argonaute RISC catalytic component 2 JBrowse link 13 35,169,243 35,230,252 RGD:13508589
G AGO3 argonaute RISC catalytic component 3 JBrowse link 15 6,133,303 6,253,032 RGD:13508589
G AGO4 argonaute RISC component 4 JBrowse link 15 6,325,899 6,351,748 RGD:13508589
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:13508589
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:9068941
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:13508589
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:13508589
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:13508589
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DGCR8 DGCR8 microprocessor complex subunit RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PUS10 pseudouridine synthase 10 JBrowse link 10 61,033,986 61,105,154 RGD:13508589
G SRRT serrate, RNA effector molecule JBrowse link 6 8,881,171 8,893,504 RGD:13508589
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 7 42,762,021 42,785,192 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 15 6,258,359 6,294,911 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 13 35,169,243 35,230,252 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 15 6,133,303 6,253,032 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 15 6,325,899 6,351,748 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:9068941
G PUM1 pumilio RNA binding family member 1 JBrowse link 2 69,907,655 70,044,055 RGD:13508589
G PUM2 pumilio RNA binding family member 2 JBrowse link 17 15,258,264 15,354,001 RGD:13508589
G RBM3 RNA binding motif protein 3 JBrowse link X 41,806,072 41,809,803 RGD:9068941
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 15 4,924,035 4,934,565 RGD:13508589
G SPOUT1 SPOUT domain containing methyltransferase 1 JBrowse link 9 54,802,145 54,811,709 RGD:13508589
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:9068941
G TRIM71 tripartite motif containing 71 JBrowse link 23 3,888,287 3,959,910 RGD:13508589
G ZC3H7A zinc finger CCCH-type containing 7A JBrowse link 6 31,042,964 31,069,507 RGD:13508589
G ZC3H7B zinc finger CCCH-type containing 7B JBrowse link 10 23,882,379 23,944,850 RGD:13508589
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:13508589
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
G TERT telomerase reverse transcriptase JBrowse link 34 11,288,622 11,307,790 RGD:9068941
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16042
    metabolic process 10496
      organic substance metabolic process 9993
        macromolecule metabolic process 8683
          gene expression 5296
            RNA processing 792
              dsRNA processing 50
                conversion of ds siRNA to ss siRNA + 1
                production of small RNA involved in gene silencing by RNA + 50
                scnRNA processing 0
Path 2
Term Annotations click to browse term
  biological_process 16042
    cellular process 15297
      cellular metabolic process 9491
        cellular nitrogen compound metabolic process 5569
          nucleobase-containing compound metabolic process 4798
            nucleic acid metabolic process 4363
              RNA metabolic process 3906
                RNA processing 792
                  dsRNA processing 50
                    conversion of ds siRNA to ss siRNA + 1
                    production of small RNA involved in gene silencing by RNA + 50
                    scnRNA processing 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.