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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of histone methylation
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Accession:GO:0031060 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones.


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regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCF CCCTC-binding factor JBrowse link 16 67,302,952 67,372,041 RGD:9068941
G DPPA2 developmental pluripotency associated 2 JBrowse link 3 113,347,666 113,369,485 RGD:9068941
G MTHFR methylenetetrahydrofolate reductase JBrowse link 1 11,766,334 11,785,645 RGD:9068941
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 51,294,137 51,296,046 RGD:9068941
G LOC100974858 core histone macro-H2A.1 JBrowse link 5 136,868,521 136,933,834 RGD:9068941
G MTF2 metal response element binding transcription factor 2 JBrowse link 1 94,481,877 94,541,506 RGD:9068941
G PHF1 PHD finger protein 1 JBrowse link 6 34,101,057 34,107,124 RGD:9068941
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 17 28,578,199 28,617,347 RGD:9068941
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 51,294,137 51,296,046 RGD:9068941
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 40,203,565 40,328,788 RGD:9068941
G FH fumarate hydratase JBrowse link 1 222,041,142 222,063,271 RGD:9068941
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 40,203,565 40,328,788 RGD:9068941
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 14,429,601 14,506,815 RGD:9068941
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 9 132,692,343 132,742,326 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 1 23,153,066 23,217,693 RGD:9068941
G LOC100974858 core histone macro-H2A.1 JBrowse link 5 136,868,521 136,933,834 RGD:9068941
G PRMT6 protein arginine methyltransferase 6 JBrowse link 1 108,698,959 108,701,675 RGD:9068941
G WDR5 WD repeat domain 5 JBrowse link 9 133,848,185 133,872,889 RGD:9068941
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MLLT6 MLLT6, PHD finger containing JBrowse link 17 18,822,552 18,842,133 RGD:9068941
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 55,382,078 55,387,663 RGD:9068941
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 22 22,627,950 22,673,921 RGD:9068941
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 14,429,601 14,506,815 RGD:9068941
G DNMT1 DNA methyltransferase 1 JBrowse link 19 10,342,478 10,390,397 RGD:9068941
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 30,169,081 30,215,487 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 1 23,153,066 23,217,693 RGD:9068941
G KDM3A lysine demethylase 3A JBrowse link 2A 88,043,712 88,094,244 RGD:9068941
G PAX5 paired box 5 JBrowse link 9 37,474,267 37,673,684 RGD:9068941
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KDM4A lysine demethylase 4A JBrowse link 1 44,325,218 44,380,163 RGD:9068941
G KDM4B lysine demethylase 4B JBrowse link 19 4,977,413 5,116,113 RGD:9068941
G KDM4C lysine demethylase 4C JBrowse link 9 6,746,265 7,155,378 RGD:9068941
G KDM4D lysine demethylase 4D JBrowse link 11 93,509,937 93,535,825 RGD:9068941
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 55,382,078 55,387,663 RGD:9068941
G SIRT1 sirtuin 1 JBrowse link 10 66,681,983 66,714,065 RGD:9068941
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 22 22,627,950 22,673,921 RGD:9068941
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 6 15,466,681 15,740,928 RGD:9068941
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EED embryonic ectoderm development JBrowse link 11 84,902,330 84,937,906 RGD:9068941
G MTF2 metal response element binding transcription factor 2 JBrowse link 1 94,481,877 94,541,506 RGD:9068941
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 70,852,687 70,894,921 RGD:9068941
G PHF1 PHD finger protein 1 JBrowse link 6 34,101,057 34,107,124 RGD:9068941
G PHF19 PHD finger protein 19 JBrowse link 9 120,330,111 120,349,274 RGD:9068941
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASXL2 ASXL transcriptional regulator 2 JBrowse link 2A 25,824,278 25,973,659 RGD:9068941
G KPNA7 karyopherin subunit alpha 7 JBrowse link 7 104,645,887 104,680,585 RGD:9068941
G ZNF304 zinc finger protein 304 JBrowse link 19 63,198,345 63,206,948 RGD:9068941
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAXIP1 PAX interacting protein 1 JBrowse link 7 158,274,193 158,329,139 RGD:9068941
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRD4 bromodomain containing 4 JBrowse link 19 15,752,096 15,789,630 RGD:9068941
G NSD3 nuclear receptor binding SET domain protein 3 JBrowse link 8 34,748,409 34,860,766 RGD:9068941
G PRDM9 PR/SET domain 9 JBrowse link 5 92,377,523 92,395,930 RGD:9068941
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUTS2 activator of transcription and developmental regulator AUTS2 JBrowse link 7 77,496,741 78,686,763 RGD:9068941
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 14,429,601 14,506,815 RGD:9068941
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,610,892 10,639,808 RGD:9068941
G DNMT1 DNA methyltransferase 1 JBrowse link 19 10,342,478 10,390,397 RGD:9068941
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 30,169,081 30,215,487 RGD:9068941
G GCG glucagon JBrowse link 2B 166,804,877 166,814,374 RGD:9068941
G KMT2A lysine methyltransferase 2A JBrowse link 11 117,203,337 117,294,755 RGD:9068941
G MYB MYB proto-oncogene, transcription factor JBrowse link 6 136,974,525 137,086,194 RGD:9068941
G NELFA negative elongation factor complex member A JBrowse link 4 2,027,939 2,054,669 RGD:9068941
G NELFE negative elongation factor complex member E JBrowse link 6 32,499,538 32,506,382 RGD:9068941
G PAXIP1 PAX interacting protein 1 JBrowse link 7 158,274,193 158,329,139 RGD:9068941
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 38,599,107 38,664,968 RGD:9068941
G SMAD4 SMAD family member 4 JBrowse link 18 47,692,311 47,802,530 RGD:9068941
G SNW1 SNW domain containing 1 JBrowse link 14 77,472,381 77,517,314 RGD:9068941
G WDR5 WD repeat domain 5 JBrowse link 9 133,848,185 133,872,889 RGD:9068941
G WDR61 WD repeat domain 61 JBrowse link 15 76,177,132 76,193,618 RGD:9068941
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KMT2E lysine methyltransferase 2E (inactive) JBrowse link 7 109,734,825 109,832,851 RGD:9068941
G PRDM9 PR/SET domain 9 JBrowse link 5 92,377,523 92,395,930 RGD:9068941
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,610,892 10,639,808 RGD:9068941
G WDR61 WD repeat domain 61 JBrowse link 15 76,177,132 76,193,618 RGD:9068941
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 19 47,239,166 47,246,713 RGD:9068941
G PRDM12 PR/SET domain 12 JBrowse link 9 130,436,273 130,463,441 RGD:9068941
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 14,429,601 14,506,815 RGD:9068941
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 9 132,692,343 132,742,326 RGD:9068941
G H1-5 H1.5 linker histone, cluster member JBrowse link 6 28,368,652 28,372,137 RGD:9068941
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 6 15,466,681 15,740,928 RGD:9068941
G MYB MYB proto-oncogene, transcription factor JBrowse link 6 136,974,525 137,086,194 RGD:9068941
G PRDM12 PR/SET domain 12 JBrowse link 9 130,436,273 130,463,441 RGD:9068941
G RIF1 replication timing regulatory factor 1 JBrowse link 2B 155,985,960 156,109,726 RGD:9068941
G SIRT1 sirtuin 1 JBrowse link 10 66,681,983 66,714,065 RGD:9068941
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 19 47,239,166 47,246,713 RGD:9068941
G LMNA lamin A/C JBrowse link 1 135,253,700 135,311,542 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 153,458,248 153,527,854 RGD:9068941
G SUV39H1 suppressor of variegation 3-9 homolog 1 JBrowse link X 48,855,494 48,868,137 RGD:9068941
G ZNF304 zinc finger protein 304 JBrowse link 19 63,198,345 63,206,948 RGD:9068941
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 14,429,601 14,506,815 RGD:9068941
positive regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHTOP chromatin target of PRMT1 JBrowse link 1 132,617,934 132,630,654 RGD:9068941
G L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 JBrowse link 22 40,193,492 40,218,925 RGD:9068941
G MEN1 menin 1 JBrowse link 11 63,499,954 63,507,164 RGD:9068941
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 45,031,819 45,037,169 RGD:9068941
G PAX7 paired box 7 JBrowse link 1 18,639,641 18,756,952 RGD:9068941
G PAXBP1 PAX3 and PAX7 binding protein 1 JBrowse link 21 32,472,880 32,510,264 RGD:9068941
G RNF20 ring finger protein 20 JBrowse link 9 100,732,240 100,761,725 RGD:9068941
G TET1 tet methylcytosine dioxygenase 1 JBrowse link 10 67,575,157 67,705,834 RGD:9068941
G XBP1 X-box binding protein 1 JBrowse link 22 27,566,423 27,572,627 RGD:9068941
regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSD1 nuclear receptor binding SET domain protein 1 JBrowse link 5 179,499,866 179,666,351 RGD:9068941
regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 2B 128,132,447 128,192,258 RGD:9068941
regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCFL CCCTC-binding factor like JBrowse link 20 55,115,325 55,143,717 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 32,429,265 32,446,860 RGD:9068941
G GATA3 GATA binding protein 3 JBrowse link 10 8,055,853 8,086,271 RGD:9068941
G KMT2A lysine methyltransferase 2A JBrowse link 11 117,203,337 117,294,755 RGD:9068941
G KMT2B lysine methyltransferase 2B JBrowse link 19 41,382,457 41,403,016 RGD:9068941
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 55,382,078 55,387,663 RGD:9068941
G PYGO2 pygopus family PHD finger 2 JBrowse link 1 133,912,411 133,920,308 RGD:9068941
G ZNF335 zinc finger protein 335 JBrowse link 20 43,374,591 43,398,047 RGD:9068941
regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 32,429,265 32,446,860 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 153,458,248 153,527,854 RGD:9068941
G SETD7 SET domain containing 7, histone lysine methyltransferase JBrowse link 4 143,167,190 143,227,731 RGD:9068941
regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 76,795,574 77,083,486 RGD:9068941
G ZNF274 zinc finger protein 274 JBrowse link 19 63,989,785 64,048,097 RGD:9068941
regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TTLL12 tubulin tyrosine ligase like 12 JBrowse link 22 42,248,276 42,270,232 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12491
    metabolic process 7938
      methylation 270
        macromolecule methylation 259
          protein methylation 171
            histone methylation 137
              regulation of histone methylation 78
                negative regulation of histone methylation + 25
                positive regulation of histone methylation + 47
                regulation of histone H3-K27 methylation + 12
                regulation of histone H3-K36 methylation + 8
                regulation of histone H3-K4 methylation + 30
                regulation of histone H3-K79 methylation + 3
                regulation of histone H3-K9 methylation + 28
                regulation of histone H4-K20 methylation + 2
Path 2
Term Annotations click to browse term
  biological_process 12491
    metabolic process 7938
      organic substance metabolic process 7624
        macromolecule metabolic process 6594
          protein metabolic process 3983
            protein modification process 2949
              cellular protein modification process 2949
                protein alkylation 171
                  protein methylation 171
                    histone methylation 137
                      regulation of histone methylation 78
                        negative regulation of histone methylation + 25
                        positive regulation of histone methylation + 47
                        regulation of histone H3-K27 methylation + 12
                        regulation of histone H3-K36 methylation + 8
                        regulation of histone H3-K4 methylation + 30
                        regulation of histone H3-K79 methylation + 3
                        regulation of histone H3-K9 methylation + 28
                        regulation of histone H4-K20 methylation + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.