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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of histone methylation
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Accession:GO:0031060 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones.


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regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCF CCCTC-binding factor JBrowse link 16 67,562,526 67,639,185 RGD:2290271
G DPPA2 developmental pluripotency associated 2 JBrowse link 3 109,293,788 109,316,589 RGD:9068941
G MTHFR methylenetetrahydrofolate reductase JBrowse link 1 11,785,723 11,806,103 RGD:2290271
G PHF1 PHD finger protein 1 JBrowse link 6 33,410,751 33,416,443 RGD:2290271
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 51,406,948 51,408,843 RGD:2290271
G MACROH2A1 macroH2A.1 histone JBrowse link 5 135,334,381 135,401,998 RGD:2290271
G MTF2 metal response element binding transcription factor 2 JBrowse link 1 93,079,235 93,139,081 RGD:2290271
G PHF1 PHD finger protein 1 JBrowse link 6 33,410,751 33,416,443 RGD:2290271
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 17 28,662,183 28,702,679 RGD:2290271
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 51,406,948 51,408,843 RGD:9068941
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 40,051,246 40,177,390 RGD:2290271
G FH fumarate hydratase JBrowse link 1 241,497,603 241,519,755 RGD:2290271
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 40,051,246 40,177,390 RGD:2290271
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 43,044,295 43,125,364 RGD:2290271
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 9 132,945,531 132,991,697 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 1 23,019,443 23,083,691 RGD:2290271
G MACROH2A1 macroH2A.1 histone JBrowse link 5 135,334,381 135,401,998 RGD:2290271
G PRMT6 protein arginine methyltransferase 6 JBrowse link 1 107,056,674 107,059,294 RGD:2290271
G WDR5 WD repeat domain 5 JBrowse link 9 134,135,382 134,159,972 RGD:2290271
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MLLT6 MLLT6, PHD finger containing JBrowse link 17 38,705,273 38,729,795 RGD:2290271
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 49,446,298 49,452,392 RGD:2290271
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 22 23,786,966 23,838,009 RGD:2290271
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 43,044,295 43,125,364 RGD:2290271
G DNMT1 DNA methyltransferase 1 JBrowse link 19 10,133,346 10,194,953 RGD:2290271
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 32,762,385 32,809,356 RGD:2290271
G KDM1A lysine demethylase 1A JBrowse link 1 23,019,443 23,083,691 RGD:2290271
G KDM3A lysine demethylase 3A JBrowse link 2 86,440,647 86,492,716 RGD:2290271
G PAX5 paired box 5 JBrowse link 9 36,833,269 37,034,268 RGD:2290271
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KDM4A lysine demethylase 4A JBrowse link 1 43,650,149 43,705,518 RGD:9068941
G KDM4B lysine demethylase 4B JBrowse link 19 4,969,087 5,153,603 RGD:2290271
G KDM4C lysine demethylase 4C JBrowse link 9 6,720,863 7,175,648 RGD:2290271
G KDM4D lysine demethylase 4D JBrowse link 11 94,973,709 94,999,519 RGD:2290271
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 49,446,298 49,452,392 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 22 23,786,966 23,838,009 RGD:2290271
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FENDRR FOXF1 adjacent non-coding developmental regulatory RNA JBrowse link 16 86,474,525 86,508,860 RGD:9068941
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 6 15,245,975 15,522,042 RGD:2290271
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EED embryonic ectoderm development JBrowse link 11 86,244,384 86,285,420 RGD:2290271
G MTF2 metal response element binding transcription factor 2 JBrowse link 1 93,079,235 93,139,081 RGD:2290271
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,533,104 71,575,892 RGD:2290271
G PHF1 PHD finger protein 1 JBrowse link 6 33,410,751 33,416,443 RGD:2290271
G PHF19 PHD finger protein 19 JBrowse link 9 120,855,651 120,902,160 RGD:2290271
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASXL2 ASXL transcriptional regulator 2 JBrowse link 2 25,733,753 25,878,487 RGD:9068941
G KPNA7 karyopherin subunit alpha 7 JBrowse link 7 99,145,467 99,219,417 RGD:2290271
G ZNF304 zinc finger protein 304 JBrowse link 19 57,351,253 57,359,898 RGD:2290271
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAXIP1 PAX interacting protein 1 JBrowse link 7 154,943,690 155,003,419 RGD:2290271
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRD4 bromodomain containing 4 JBrowse link 19 15,235,519 15,332,539 RGD:2290271
G NSD3 nuclear receptor binding SET domain protein 3 JBrowse link 8 38,269,704 38,382,272 RGD:2290271
G PRDM9 PR/SET domain 9 JBrowse link 5 23,507,155 23,528,093 RGD:2290271
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUTS2 activator of transcription and developmental regulator AUTS2 JBrowse link 7 69,598,475 70,793,506 RGD:2290271
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 43,044,295 43,125,364 RGD:2290271
G CTNNB1 catenin beta 1 JBrowse link 3 41,199,422 41,240,445 RGD:2290271
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,751,246 10,779,746 RGD:2290271
G DNMT1 DNA methyltransferase 1 JBrowse link 19 10,133,346 10,194,953 RGD:2290271
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 32,762,385 32,809,356 RGD:2290271
G GCG glucagon JBrowse link 2 162,142,882 162,152,247 RGD:2290271
G KMT2A lysine methyltransferase 2A JBrowse link 11 118,436,492 118,526,832 RGD:2290271
G MYB MYB proto-oncogene, transcription factor JBrowse link 6 135,181,308 135,219,172 RGD:2290271
G NELFA negative elongation factor complex member A JBrowse link 4 1,982,717 2,041,914 RGD:2290271
G NELFE negative elongation factor complex member E JBrowse link 6 31,952,087 31,959,043 RGD:2290271
G PAXIP1 PAX interacting protein 1 JBrowse link 7 154,943,690 155,003,419 RGD:2290271
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 41,417,104 41,483,563 RGD:2290271
G SMAD4 SMAD family member 4 JBrowse link 18 51,030,213 51,085,042 RGD:2290271
G SNW1 SNW domain containing 1 JBrowse link 14 77,717,599 77,761,156 RGD:2290271
G WDR5 WD repeat domain 5 JBrowse link 9 134,135,382 134,159,972 RGD:2290271
G WDR61 WD repeat domain 61 JBrowse link 15 78,283,233 78,299,703 RGD:2290271
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KMT2E lysine methyltransferase 2E (inactive) JBrowse link 7 104,940,949 105,115,019 RGD:2290271
G PRDM9 PR/SET domain 9 JBrowse link 5 23,507,155 23,528,093 RGD:2290271
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,751,246 10,779,746 RGD:2290271
G WDR61 WD repeat domain 61 JBrowse link 15 78,283,233 78,299,703 RGD:2290271
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 19 41,844,743 41,852,333 RGD:2290271
G PRDM12 PR/SET domain 12 JBrowse link 9 130,664,594 130,682,983 RGD:2290271
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 43,044,295 43,125,364 RGD:2290271
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 9 132,945,531 132,991,697 RGD:9068941
G H1-5 H1.5 linker histone, cluster member JBrowse link 6 27,866,792 27,867,588 RGD:2290271
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 6 15,245,975 15,522,042 RGD:2290271
G MYB MYB proto-oncogene, transcription factor JBrowse link 6 135,181,308 135,219,172 RGD:2290271
G PRDM12 PR/SET domain 12 JBrowse link 9 130,664,594 130,682,983 RGD:2290271
G RIF1 replication timing regulatory factor 1 JBrowse link 2 151,409,902 151,534,200 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 19 41,844,743 41,852,333 RGD:2290271
G LMNA lamin A/C JBrowse link 1 156,082,573 156,140,081 RGD:2290271
G MECP2 methyl-CpG binding protein 2 JBrowse link X 154,021,573 154,097,717 RGD:2290271
G SUV39H1 suppressor of variegation 3-9 homolog 1 JBrowse link X 48,695,554 48,709,016 RGD:9068941
G ZNF304 zinc finger protein 304 JBrowse link 19 57,351,253 57,359,898 RGD:2290271
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 17 43,044,295 43,125,364 RGD:2290271
positive regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHTOP chromatin target of PRMT1 JBrowse link 1 153,633,982 153,646,306 RGD:2290271
G L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 JBrowse link 22 41,205,192 41,231,271 RGD:9068941
G MEN1 menin 1 JBrowse link 11 64,803,514 64,811,294 RGD:9068941
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 39,385,629 39,391,106 RGD:2290271
G PAX7 paired box 7 JBrowse link 1 18,630,846 18,748,866 RGD:2290271
G PAXBP1 PAX3 and PAX7 binding protein 1 JBrowse link 21 32,733,899 32,771,858 RGD:2290271
G RNF20 ring finger protein 20 JBrowse link 9 101,533,853 101,563,344 RGD:2290271
G TET1 tet methylcytosine dioxygenase 1 JBrowse link 10 68,560,337 68,700,794 RGD:2290271
G XBP1 X-box binding protein 1 JBrowse link 22 28,794,560 28,800,572 RGD:2290271
regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 8,045,420 8,075,198 RGD:2290271
G HOTAIR HOX transcript antisense RNA JBrowse link 12 53,962,308 53,974,956 RGD:9068941
regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSD1 nuclear receptor binding SET domain protein 1 JBrowse link 5 177,131,835 177,300,213 RGD:2290271
regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 2 127,480,807 127,526,886 RGD:2290271
regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCFL CCCTC-binding factor like JBrowse link 20 57,495,965 57,525,652 RGD:2290271
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,751,246 10,779,746 RGD:2290271
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 31,879,759 31,897,698 RGD:2290271
G GATA3 GATA binding protein 3 JBrowse link 10 8,045,420 8,075,198 RGD:2290271
G GFI1 growth factor independent 1 transcriptional repressor JBrowse link 1 92,473,043 92,486,925 RGD:2290271
G HOTAIR HOX transcript antisense RNA JBrowse link 12 53,962,308 53,974,956 RGD:9068941
G KMT2A lysine methyltransferase 2A JBrowse link 11 118,436,492 118,526,832 RGD:9068941
G KMT2B lysine methyltransferase 2B JBrowse link 19 35,717,818 35,738,878 RGD:2290271
G PIH1D1 PIH1 domain containing 1 JBrowse link 19 49,446,298 49,452,392 RGD:2290271
G PYGO2 pygopus family PHD finger 2 JBrowse link 1 154,957,026 154,961,782 RGD:2290271
G ZNF335 zinc finger protein 335 JBrowse link 20 45,948,653 45,972,910 RGD:2290271
regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AIRN antisense of IGF2R non-protein coding RNA JBrowse link 6 160,003,291 160,007,664 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 31,879,759 31,897,698 RGD:2290271
G SETD7 SET domain containing 7, histone lysine methyltransferase JBrowse link 4 139,495,934 139,556,769 RGD:2290271
regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 77,504,878 77,786,235 RGD:2290271
G ZNF274 zinc finger protein 274 JBrowse link 19 58,182,989 58,213,562 RGD:2290271
regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TTLL12 tubulin tyrosine ligase like 12 JBrowse link 22 43,166,622 43,187,134 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18534
    metabolic process 12192
      methylation 404
        macromolecule methylation 350
          protein methylation 208
            histone methylation 162
              regulation of histone methylation 83
                negative regulation of histone methylation + 26
                positive regulation of histone methylation + 48
                regulation of histone H3-K27 methylation + 13
                regulation of histone H3-K36 methylation + 8
                regulation of histone H3-K4 methylation + 33
                regulation of histone H3-K79 methylation + 3
                regulation of histone H3-K9 methylation + 29
                regulation of histone H4-K20 methylation + 2
Path 2
Term Annotations click to browse term
  biological_process 18534
    metabolic process 12192
      organic substance metabolic process 11628
        macromolecule metabolic process 10094
          protein metabolic process 6143
            protein modification process 4421
              cellular protein modification process 4421
                protein alkylation 208
                  protein methylation 208
                    histone methylation 162
                      regulation of histone methylation 83
                        negative regulation of histone methylation + 26
                        positive regulation of histone methylation + 48
                        regulation of histone H3-K27 methylation + 13
                        regulation of histone H3-K36 methylation + 8
                        regulation of histone H3-K4 methylation + 33
                        regulation of histone H3-K79 methylation + 3
                        regulation of histone H3-K9 methylation + 29
                        regulation of histone H4-K20 methylation + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.