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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of histone methylation
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Accession:GO:0031060 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones.


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regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcf CCCTC-binding factor JBrowse link 8 105,636,474 105,682,922 RGD:2290270
G Dppa2 developmental pluripotency associated 2 JBrowse link 16 48,310,274 48,319,513 RGD:2290270
G Mthfr methylenetetrahydrofolate reductase JBrowse link 4 148,039,077 148,059,562 RGD:2290270
G Phf1 PHD finger protein 1 JBrowse link 17 26,933,127 26,937,908 RGD:2290270
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link X 6,081,218 6,083,420 RGD:9068941
G Macroh2a1 macroH2A.1 histone JBrowse link 13 56,073,622 56,135,626 RGD:2290270
G Mtf2 metal response element binding transcription factor 2 JBrowse link 5 108,065,660 108,109,219 RGD:2290270
G Phf1 PHD finger protein 1 JBrowse link 17 26,933,127 26,937,908 RGD:2290270
G Supt6 SPT6, histone chaperone and transcription elongation factor JBrowse link 11 78,206,749 78,245,972 RGD:2290270
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link X 6,081,218 6,083,420 RGD:2290270
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 interacting corepressor JBrowse link X 12,036,737 12,160,516 RGD:2290270
G Fh1 fumarate hydratase 1 JBrowse link 1 175,601,378 175,625,635 RGD:2290270
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 interacting corepressor JBrowse link X 12,036,737 12,160,516 RGD:2290270
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:2290270
G Gfi1b growth factor independent 1B JBrowse link 2 28,609,450 28,621,982 RGD:2290270
G Kdm1a lysine (K)-specific demethylase 1A JBrowse link 4 136,550,533 136,602,787 RGD:2290270
G Macroh2a1 macroH2A.1 histone JBrowse link 13 56,073,622 56,135,626 RGD:2290270
G Prmt6 protein arginine N-methyltransferase 6 JBrowse link 3 110,246,104 110,250,999 RGD:2290270
G Wdr5 WD repeat domain 5 JBrowse link 2 27,515,147 27,536,535 RGD:2290270
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mllt6 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6 JBrowse link 11 97,663,122 97,685,461 RGD:2290270
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pih1d1 PIH1 domain containing 1 JBrowse link 7 45,150,613 45,160,065 RGD:2290270
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 10 75,896,769 75,921,614 RGD:2290270
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:2290270
G Dnmt1 DNA methyltransferase (cytosine-5) 1 JBrowse link 9 20,907,206 20,959,888 RGD:2290270
G Dnmt3b DNA methyltransferase 3B JBrowse link 2 153,649,411 153,687,730 RGD:2290270
G Kdm1a lysine (K)-specific demethylase 1A JBrowse link 4 136,550,533 136,602,787 RGD:2290270
G Kdm3a lysine (K)-specific demethylase 3A JBrowse link 6 71,588,970 71,632,990 RGD:2290270
G Pax5 paired box 5 JBrowse link 4 44,524,748 44,710,694 RGD:2290270
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm4a lysine (K)-specific demethylase 4A JBrowse link 4 118,136,957 118,180,090 RGD:2290270
G Kdm4b lysine (K)-specific demethylase 4B JBrowse link 17 56,325,970 56,403,774 RGD:2290270
G Kdm4c lysine (K)-specific demethylase 4C JBrowse link 4 74,242,497 74,405,864 RGD:2290270
G Kdm4d lysine (K)-specific demethylase 4D JBrowse link 9 14,462,548 14,500,522 RGD:2290270
G Pih1d1 PIH1 domain containing 1 JBrowse link 7 45,150,613 45,160,065 RGD:2290270
G Sirt1 sirtuin 1 JBrowse link 10 63,319,005 63,339,035 RGD:2290270
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 10 75,896,769 75,921,614 RGD:2290270
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fendrr Foxf1 adjacent non-coding developmental regulatory RNA JBrowse link 8 121,054,882 121,083,110 RGD:2290270
G Jarid2 jumonji, AT rich interactive domain 2 JBrowse link 13 44,730,774 44,921,643 RGD:2290270
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eed embryonic ectoderm development JBrowse link 7 89,954,654 89,980,976 RGD:2290270
G Mtf2 metal response element binding transcription factor 2 JBrowse link 5 108,065,660 108,109,219 RGD:2290270
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) JBrowse link X 101,640,011 101,684,351 RGD:2290270
G Phf1 PHD finger protein 1 JBrowse link 17 26,933,127 26,937,908 RGD:2290270
G Phf19 PHD finger protein 19 JBrowse link 2 34,893,752 34,914,353 RGD:2290270
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asxl2 additional sex combs like 2, transcriptional regulator JBrowse link 12 3,426,857 3,510,811 RGD:2290270
G Kpna7 karyopherin alpha 7 (importin alpha 8) JBrowse link 5 144,983,727 145,009,636 RGD:2290270
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Paxip1 PAX interacting (with transcription-activation domain) protein 1 JBrowse link 5 27,740,080 27,791,672 RGD:2290270
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd4 bromodomain containing 4 JBrowse link 17 32,196,272 32,284,743 RGD:9068941
G Nsd3 nuclear receptor binding SET domain protein 3 JBrowse link 8 25,601,601 25,719,667 RGD:2290270
G Prdm9 PR domain containing 9 JBrowse link 17 15,543,072 15,564,374 RGD:2290270
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Auts2 autism susceptibility candidate 2 JBrowse link 5 131,437,333 132,543,220 RGD:2290270
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:2290270
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 7 111,028,951 111,056,377 RGD:2290270
G Dnmt1 DNA methyltransferase (cytosine-5) 1 JBrowse link 9 20,907,206 20,959,888 RGD:2290270
G Dnmt3b DNA methyltransferase 3B JBrowse link 2 153,649,411 153,687,730 RGD:2290270
G Gcg glucagon JBrowse link 2 62,474,530 62,483,653 RGD:2290270
G Kmt2a lysine (K)-specific methyltransferase 2A JBrowse link 9 44,803,355 44,881,352 RGD:2290270
G Myb myeloblastosis oncogene JBrowse link 10 21,124,930 21,160,984 RGD:2290270
G Nelfa negative elongation factor complex member A, Whsc2 JBrowse link 5 33,897,916 33,936,301 RGD:2290270
G Nelfe negative elongation factor complex member E, Rdbp JBrowse link 17 34,850,391 34,856,372 RGD:9068941
G Paxip1 PAX interacting (with transcription-activation domain) protein 1 JBrowse link 5 27,740,080 27,791,672 RGD:2290270
G Rtf1 RTF1, Paf1/RNA polymerase II complex component JBrowse link 2 119,675,068 119,735,407 RGD:2290270
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:2290270
G Snw1 SNW domain containing 1 JBrowse link 12 87,449,910 87,472,299 RGD:2290270
G Wdr5 WD repeat domain 5 JBrowse link 2 27,515,147 27,536,535 RGD:2290270
G Wdr61 WD repeat domain 61 JBrowse link 9 54,717,153 54,734,549 RGD:2290270
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kmt2e lysine (K)-specific methyltransferase 2E JBrowse link 5 23,433,036 23,504,235 RGD:2290270
G Prdm9 PR domain containing 9 JBrowse link 17 15,543,072 15,564,374 RGD:2290270
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 7 111,028,951 111,056,377 RGD:2290270
G Wdr61 WD repeat domain 61 JBrowse link 9 54,717,153 54,734,549 RGD:2290270
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 doublesex and mab-3 related transcription factor like family C2 JBrowse link 7 24,869,817 24,877,655 RGD:2290270
G Prdm12 PR domain containing 12 JBrowse link 2 31,635,026 31,655,795 RGD:2290270
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:2290270
G Gfi1b growth factor independent 1B JBrowse link 2 28,609,450 28,621,982 RGD:2290270
G H1f5 H1.5 linker histone, cluster member JBrowse link 13 21,779,832 21,780,625 RGD:9068941
G Jarid2 jumonji, AT rich interactive domain 2 JBrowse link 13 44,730,774 44,921,643 RGD:2290270
G Myb myeloblastosis oncogene JBrowse link 10 21,124,930 21,160,984 RGD:2290270
G Prdm12 PR domain containing 12 JBrowse link 2 31,635,026 31,655,795 RGD:2290270
G Rif1 replication timing regulatory factor 1 JBrowse link 2 52,072,815 52,126,769 RGD:2290270
G Sirt1 sirtuin 1 JBrowse link 10 63,319,005 63,339,035 RGD:2290270
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 doublesex and mab-3 related transcription factor like family C2 JBrowse link 7 24,869,817 24,877,655 RGD:2290270
G Lmna lamin A JBrowse link 3 88,481,148 88,509,932 RGD:2290270
G Mecp2 methyl CpG binding protein 2 JBrowse link X 74,026,592 74,085,690 RGD:2290270
G Suv39h1 suppressor of variegation 3-9 1 JBrowse link X 8,061,171 8,074,760 RGD:2290270
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:2290270
positive regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chtop chromatin target of PRMT1 JBrowse link 3 90,498,539 90,509,527 RGD:9068941
G L3mbtl2 L3MBTL2 polycomb repressive complex 1 subunit JBrowse link 15 81,663,889 81,688,315 RGD:2290270
G Men1 multiple endocrine neoplasia 1 JBrowse link 19 6,334,979 6,340,894 RGD:2290270
G Paf1 Paf1, RNA polymerase II complex component JBrowse link 7 28,392,996 28,399,383 RGD:2290270
G Pax7 paired box 7 JBrowse link 4 139,737,059 139,833,530 RGD:2290270
G Paxbp1 PAX3 and PAX7 binding protein 1 JBrowse link 16 91,014,037 91,044,379 RGD:2290270
G Rnf20 ring finger protein 20 JBrowse link 4 49,632,005 49,656,887 RGD:2290270
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 10 62,804,570 62,887,469 RGD:2290270
G Xbp1 X-box binding protein 1 JBrowse link 11 5,520,641 5,525,993 RGD:2290270
regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link 2 9,857,078 9,887,953 RGD:2290270
G Hotair HOX transcript antisense RNA (non-protein coding) JBrowse link 15 102,944,062 102,947,946 RGD:2290270
regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsd1 nuclear receptor-binding SET-domain protein 1 JBrowse link 13 55,209,782 55,318,325 RGD:2290270
regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iws1 IWS1, SUPT6 interacting protein JBrowse link 18 32,067,326 32,104,331 RGD:2290270
regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcfl CCCTC-binding factor (zinc finger protein)-like JBrowse link 2 173,093,609 173,119,525 RGD:2290270
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:2290270
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 7 111,028,951 111,056,377 RGD:2290270
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 JBrowse link 17 34,898,463 34,914,073 RGD:2290270
G Gata3 GATA binding protein 3 JBrowse link 2 9,857,078 9,887,953 RGD:2290270
G Gfi1 growth factor independent 1 transcription repressor JBrowse link 5 107,716,655 107,725,805 RGD:2290270
G Hotair HOX transcript antisense RNA (non-protein coding) JBrowse link 15 102,944,062 102,947,946 RGD:2290270
G Kmt2a lysine (K)-specific methyltransferase 2A JBrowse link 9 44,803,355 44,881,352 RGD:2290270
G Kmt2b lysine (K)-specific methyltransferase 2B JBrowse link 7 30,568,855 30,589,056 RGD:2290270
G Pih1d1 PIH1 domain containing 1 JBrowse link 7 45,150,613 45,160,065 RGD:2290270
G Pygo2 pygopus 2 JBrowse link 3 89,430,114 89,435,131 RGD:2290270
G Zfp335 zinc finger protein 335 JBrowse link 2 164,891,882 164,912,585 RGD:2290270
regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Airn antisense Igf2r RNA JBrowse link 17 12,741,311 12,859,884 RGD:2290270
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 JBrowse link 17 34,898,463 34,914,073 RGD:2290270
G Mecp2 methyl CpG binding protein 2 JBrowse link X 74,026,592 74,085,690 RGD:2290270
G Setd7 SET domain containing (lysine methyltransferase) 7 JBrowse link 3 51,515,318 51,560,823 RGD:2290270
regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX, chromatin remodeler JBrowse link X 105,797,615 105,929,372 RGD:2290270
G Zfp110 zinc finger protein 110 JBrowse link 7 12,834,761 12,850,586 RGD:9068941
regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ttll12 tubulin tyrosine ligase-like family, member 12 JBrowse link 15 83,575,094 83,595,157 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23159
    metabolic process 10977
      methylation 359
        macromolecule methylation 308
          protein methylation 190
            histone methylation 151
              regulation of histone methylation 82
                negative regulation of histone methylation + 26
                positive regulation of histone methylation + 46
                regulation of histone H3-K27 methylation + 12
                regulation of histone H3-K36 methylation + 8
                regulation of histone H3-K4 methylation + 33
                regulation of histone H3-K79 methylation + 3
                regulation of histone H3-K9 methylation + 28
                regulation of histone H4-K20 methylation + 2
Path 2
Term Annotations click to browse term
  biological_process 23159
    metabolic process 10977
      organic substance metabolic process 10447
        macromolecule metabolic process 8970
          protein metabolic process 5373
            protein modification process 3629
              cellular protein modification process 3629
                protein alkylation 190
                  protein methylation 190
                    histone methylation 151
                      regulation of histone methylation 82
                        negative regulation of histone methylation + 26
                        positive regulation of histone methylation + 46
                        regulation of histone H3-K27 methylation + 12
                        regulation of histone H3-K36 methylation + 8
                        regulation of histone H3-K4 methylation + 33
                        regulation of histone H3-K79 methylation + 3
                        regulation of histone H3-K9 methylation + 28
                        regulation of histone H4-K20 methylation + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.