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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of histone methylation
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Accession:GO:0031060 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones.


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regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCF CCCTC-binding factor JBrowse link 6 28,188,002 28,261,009 RGD:14298760
G DPPA2 developmental pluripotency associated 2 JBrowse link 13 150,186,833 150,200,612 RGD:9068941
G MTHFR methylenetetrahydrofolate reductase JBrowse link 6 71,863,637 71,882,118 RGD:9068941
G PHF1 PHD finger protein 1 JBrowse link 7 29,714,295 29,719,996 RGD:14298760
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 44,858,057 44,863,263 RGD:9068941
G H2AFY H2A histone family, member Y JBrowse link 2 137,535,128 137,623,886 RGD:14298760
G MTF2 metal response element binding transcription factor 2 JBrowse link 4 124,051,586 124,124,440 RGD:14298760
G PHF1 PHD finger protein 1 JBrowse link 7 29,714,295 29,719,996 RGD:14298760
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 12 44,916,716 44,940,732 RGD:14298760
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EZHIP EZH inhibitory protein JBrowse link X 44,858,057 44,863,263 RGD:9068941
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 35,768,013 35,891,013 RGD:9068941
G FH fumarate hydratase JBrowse link 10 12,404,143 12,431,843 RGD:14298760
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCOR BCL6 corepressor JBrowse link X 35,768,013 35,891,013 RGD:9068941
G BRCA1 BRCA1 DNA repair associated JBrowse link 12 19,788,087 19,854,515 RGD:14298760
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 1 272,701,386 272,715,551 RGD:9068941
G H2AFY H2A histone family, member Y JBrowse link 2 137,535,128 137,623,886 RGD:14298760
G KDM1A lysine demethylase 1A JBrowse link 6 80,903,407 80,971,875 RGD:9068941
G PRMT6 protein arginine methyltransferase 6 JBrowse link 4 112,698,865 112,710,305 RGD:14298760
G WDR5 WD repeat domain 5 JBrowse link 1 273,560,274 273,577,827 RGD:9068941
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MLLT6 MLLT6, PHD finger containing JBrowse link 12 23,380,190 23,404,853 RGD:14298760
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIH1D1 PIH1 domain containing 1 JBrowse link 6 54,524,172 54,529,700 RGD:14298760
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 14 49,874,981 49,906,043 RGD:9068941
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 12 19,788,087 19,854,515 RGD:14298760
G DNMT1 DNA methyltransferase 1 JBrowse link 2 68,981,564 69,040,364 RGD:14298760
G DNMT3B DNA methyltransferase 3 beta JBrowse link 17 36,345,715 36,386,076 RGD:14298760
G KDM1A lysine demethylase 1A JBrowse link 6 80,903,407 80,971,875 RGD:9068941
G KDM3A lysine demethylase 3A JBrowse link 3 58,300,109 58,355,000 RGD:14298760
G PAX5 paired box 5 JBrowse link 1 237,574,938 237,785,454 RGD:14298760
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KDM4A lysine demethylase 4A JBrowse link 6 167,597,954 167,642,381 RGD:14298760
G KDM4B lysine demethylase 4B JBrowse link 2 73,746,379 73,889,881 RGD:14298760
G KDM4C lysine demethylase 4C JBrowse link 1 215,071,335 215,507,778 RGD:14298760
G LOC100627380 lysine-specific demethylase 4D-like JBrowse link 9 27,083,348 27,085,693 RGD:9068941
G PIH1D1 PIH1 domain containing 1 JBrowse link 6 54,524,172 54,529,700 RGD:14298760
G SIRT1 sirtuin 1 JBrowse link 14 71,091,167 71,126,351 RGD:14298760
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 14 49,874,981 49,906,043 RGD:9068941
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 7 11,358,243 11,601,715 RGD:14298760
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EED embryonic ectoderm development JBrowse link 9 20,123,077 20,158,747 RGD:14298760
G MTF2 metal response element binding transcription factor 2 JBrowse link 4 124,051,586 124,124,440 RGD:14298760
G OGT O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 57,521,091 57,558,467 RGD:14298760
G PHF1 PHD finger protein 1 JBrowse link 7 29,714,295 29,719,996 RGD:14298760
G PHF19 PHD finger protein 19 JBrowse link 1 260,899,462 260,919,776 RGD:14298760
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASXL2 ASXL transcriptional regulator 2 JBrowse link 3 113,044,788 113,184,809 RGD:9068941
G KPNA7 karyopherin subunit alpha 7 JBrowse link 3 6,167,382 6,201,282 RGD:14298760
G ZNF304 zinc finger protein 304 JBrowse link 6 61,740,677 61,790,290 RGD:9068941
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PAXIP1 PAX interacting protein 1 JBrowse link 18 3,066,853 3,111,239 RGD:14298760
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRD4 bromodomain containing 4 JBrowse link 2 62,250,958 62,345,851 RGD:14298760
G NSD3 nuclear receptor binding SET domain protein 3 JBrowse link 15 48,119,132 48,245,673 RGD:14298760
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AUTS2 activator of transcription and developmental regulator AUTS2 JBrowse link 3 13,565,439 14,794,365 RGD:9068941
G BRCA1 BRCA1 DNA repair associated JBrowse link 12 19,788,087 19,854,515 RGD:14298760
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 2 48,700,629 48,729,480 RGD:14298760
G DNMT1 DNA methyltransferase 1 JBrowse link 2 68,981,564 69,040,364 RGD:14298760
G DNMT3B DNA methyltransferase 3 beta JBrowse link 17 36,345,715 36,386,076 RGD:14298760
G GCG glucagon JBrowse link 15 68,800,557 68,810,268 RGD:14298760
G KMT2A lysine methyltransferase 2A JBrowse link 9 45,743,566 45,828,559 RGD:14298760
G MYB MYB proto-oncogene, transcription factor JBrowse link 1 28,819,500 28,856,222 RGD:9068941
G NELFA negative elongation factor complex member A JBrowse link 8 1,018,443 1,039,091 RGD:9068941
G NELFE negative elongation factor complex member E JBrowse link 7 24,040,525 24,046,932 RGD:9068941
G PAXIP1 PAX interacting protein 1 JBrowse link 18 3,066,853 3,111,239 RGD:14298760
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 129,886,798 129,942,845 RGD:14298760
G SMAD4 SMAD family member 4 JBrowse link 1 100,521,843 100,633,501 RGD:14298760
G SNW1 SNW domain containing 1 JBrowse link 7 100,718,298 100,749,414 RGD:9068941
G WDR5 WD repeat domain 5 JBrowse link 1 273,560,274 273,577,827 RGD:9068941
G WDR61 WD repeat domain 61 JBrowse link 7 47,641,103 47,661,353 RGD:14298760
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KMT2E lysine methyltransferase 2E (inactive) JBrowse link 9 104,876,301 105,007,161 RGD:14298760
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 2 48,700,629 48,729,480 RGD:14298760
G WDR61 WD repeat domain 61 JBrowse link 7 47,641,103 47,661,353 RGD:14298760
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 6 50,011,312 50,017,513 RGD:9068941
G PRDM12 PR/SET domain 12 JBrowse link 1 270,723,880 270,739,468 RGD:14298760
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 12 19,788,087 19,854,515 RGD:14298760
G GFI1B growth factor independent 1B transcriptional repressor JBrowse link 1 272,701,386 272,715,551 RGD:9068941
G H1-5 H1.5 linker histone, cluster member JBrowse link 7 21,621,863 21,622,646 RGD:9068941
G JARID2 jumonji and AT-rich interaction domain containing 2 JBrowse link 7 11,358,243 11,601,715 RGD:14298760
G MYB MYB proto-oncogene, transcription factor JBrowse link 1 28,819,500 28,856,222 RGD:9068941
G PRDM12 PR/SET domain 12 JBrowse link 1 270,723,880 270,739,468 RGD:9068941
G RIF1 replication timing regulatory factor 1 JBrowse link 15 769,518 832,036 RGD:14298760
G SIRT1 sirtuin 1 JBrowse link 14 71,091,167 71,126,351 RGD:14298760
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DMRTC2 DMRT like family C2 JBrowse link 6 50,011,312 50,017,513 RGD:9068941
G LMNA lamin A/C JBrowse link 4 93,899,019 93,927,255 RGD:14298760
G MECP2 methyl-CpG binding protein 2 JBrowse link X 124,735,523 124,789,063 RGD:9068941
G SUV39H1 suppressor of variegation 3-9 homolog 1 JBrowse link X 42,797,309 42,811,457 RGD:9068941
G ZNF304 zinc finger protein 304 JBrowse link 6 61,740,677 61,790,290 RGD:9068941
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BRCA1 BRCA1 DNA repair associated JBrowse link 12 19,788,087 19,854,515 RGD:14298760
positive regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHTOP chromatin target of PRMT1 JBrowse link 4 95,996,030 96,006,511 RGD:14298760
G L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 JBrowse link 5 7,257,806 7,277,633 RGD:9068941
G MEN1 menin 1 JBrowse link 2 7,358,130 7,364,952 RGD:9068941
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 6 48,046,487 48,053,631 RGD:14298760
G PAX7 paired box 7 JBrowse link 6 77,160,827 77,268,626 RGD:9068941
G PAXBP1 PAX3 and PAX7 binding protein 1 JBrowse link 13 196,336,952 196,371,258 RGD:14298760
G RNF20 ring finger protein 20 JBrowse link 1 243,225,711 243,254,465 RGD:14298760
G TET1 tet methylcytosine dioxygenase 1 JBrowse link 14 71,675,671 71,812,732 RGD:14298760
G XBP1 X-box binding protein 1 JBrowse link 14 46,011,239 46,016,526 RGD:9068941
regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSD1 nuclear receptor binding SET domain protein 1 JBrowse link 2 80,649,882 80,810,934 RGD:14298760
regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 15 59,822,789 59,875,867 RGD:14298760
regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CTCFL CCCTC-binding factor like JBrowse link 17 57,860,231 57,891,094 RGD:9068941
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 2 48,700,629 48,729,480 RGD:14298760
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 7 23,977,683 23,992,673 RGD:9068941
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GFI1 growth factor independent 1 transcriptional repressor JBrowse link 4 124,619,887 124,629,638 RGD:14298760
G KMT2A lysine methyltransferase 2A JBrowse link 9 45,743,566 45,828,559 RGD:9068941
G KMT2B lysine methyltransferase 2B JBrowse link 6 45,146,863 45,166,854 RGD:14298760
G PIH1D1 PIH1 domain containing 1 JBrowse link 6 54,524,172 54,529,700 RGD:14298760
G ZNF335 zinc finger protein 335 JBrowse link 17 48,132,531 48,153,251 RGD:14298760
regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 7 23,977,683 23,992,673 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 124,735,523 124,789,063 RGD:9068941
G SETD7 SET domain containing 7, histone lysine methyltransferase JBrowse link 8 87,478,266 87,527,190 RGD:14298760
regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATRX ATRX chromatin remodeler JBrowse link X 61,584,028 61,872,341 RGD:14298760
G LOC100518738 neurotrophin receptor-interacting factor homolog JBrowse link 6 62,833,276 62,882,576 RGD:14298760
regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TTLL12 tubulin tyrosine ligase like 12 JBrowse link 5 5,687,895 5,719,003 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16411
    metabolic process 10434
      methylation 346
        macromolecule methylation 310
          protein methylation 193
            histone methylation 147
              regulation of histone methylation 77
                negative regulation of histone methylation + 25
                positive regulation of histone methylation + 46
                regulation of histone H3-K27 methylation + 12
                regulation of histone H3-K36 methylation + 7
                regulation of histone H3-K4 methylation + 29
                regulation of histone H3-K79 methylation + 3
                regulation of histone H3-K9 methylation + 28
                regulation of histone H4-K20 methylation + 2
Path 2
Term Annotations click to browse term
  biological_process 16411
    metabolic process 10434
      organic substance metabolic process 9900
        macromolecule metabolic process 8603
          protein metabolic process 5250
            protein modification process 3669
              cellular protein modification process 3669
                protein alkylation 193
                  protein methylation 193
                    histone methylation 147
                      regulation of histone methylation 77
                        negative regulation of histone methylation + 25
                        positive regulation of histone methylation + 46
                        regulation of histone H3-K27 methylation + 12
                        regulation of histone H3-K36 methylation + 7
                        regulation of histone H3-K4 methylation + 29
                        regulation of histone H3-K79 methylation + 3
                        regulation of histone H3-K9 methylation + 28
                        regulation of histone H4-K20 methylation + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.