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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of histone methylation
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Accession:GO:0031060 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones.


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regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcf CCCTC-binding factor JBrowse link NW_004936475 17,987,137 18,031,733 RGD:9068941
G Mthfr methylenetetrahydrofolate reductase JBrowse link NW_004936474 623,438 637,849 RGD:9068941
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link NW_004936909 106,077 107,828 RGD:9068941
G LOC101971629 core histone macro-H2A.1 JBrowse link NW_004936597 2,496,489 2,556,352 RGD:9068941
G Mtf2 metal response element binding transcription factor 2 JBrowse link NW_004936537 6,071,435 6,134,144 RGD:9068941
G Phf1 PHD finger protein 1 JBrowse link NW_004936476 25,481,938 25,487,026 RGD:9068941
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link NW_004936538 4,878,645 4,910,613 RGD:9068941
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link NW_004936909 106,077 107,828 RGD:9068941
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 corepressor JBrowse link NW_004936502 6,764,043 6,812,194 RGD:9068941
G Fh fumarate hydratase JBrowse link NW_004936526 8,936,096 8,965,155 RGD:9068941
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 corepressor JBrowse link NW_004936502 6,764,043 6,812,194 RGD:9068941
G Brca1 BRCA1 DNA repair associated JBrowse link NW_004936490 17,735,444 17,801,456 RGD:9068941
G Gfi1b growth factor independent 1B transcriptional repressor JBrowse link NW_004936487 19,414,135 19,417,465 RGD:9068941
G Kdm1a lysine demethylase 1A JBrowse link NW_004936474 8,262,913 8,319,089 RGD:9068941
G LOC101971629 core histone macro-H2A.1 JBrowse link NW_004936597 2,496,489 2,556,352 RGD:9068941
G Prmt6 protein arginine methyltransferase 6 JBrowse link NW_004936731 1,262,335 1,268,200 RGD:9068941
G Wdr5 WD repeat domain 5 JBrowse link NW_004936669 2,943,759 2,959,788 RGD:9068941
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mllt6 MLLT6, PHD finger containing JBrowse link NW_004936490 14,113,317 14,135,710 RGD:9068941
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pih1d1 PIH1 domain containing 1 JBrowse link NW_004936664 3,321,278 3,326,720 RGD:9068941
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link NW_004936619 1,276,239 1,308,945 RGD:9068941
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1 DNA repair associated JBrowse link NW_004936490 17,735,444 17,801,456 RGD:9068941
G Dnmt1 DNA methyltransferase 1 JBrowse link NW_004936659 520,181 565,496 RGD:9068941
G Dnmt3b DNA methyltransferase 3 beta JBrowse link NW_004936485 19,547,836 19,570,716 RGD:9068941
G Kdm1a lysine demethylase 1A JBrowse link NW_004936474 8,262,913 8,319,089 RGD:9068941
G Kdm3a lysine demethylase 3A JBrowse link NW_004936712 1,053,210 1,097,845 RGD:9068941
G Pax5 paired box 5 JBrowse link NW_004936524 4,700,815 4,887,035 RGD:9068941
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm4a lysine demethylase 4A JBrowse link NW_004936474 25,002,527 25,056,642 RGD:9068941
G Kdm4b lysine demethylase 4B JBrowse link NW_004936588 2,908,970 3,005,625 RGD:9068941
G Kdm4c lysine demethylase 4C JBrowse link NW_004936539 1,198,105 1,580,078 RGD:9068941
G Kdm4d lysine demethylase 4D JBrowse link NW_004936674 53,200 73,042 RGD:9068941
G Pih1d1 PIH1 domain containing 1 JBrowse link NW_004936664 3,321,278 3,326,720 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004936521 10,296,097 10,316,673 RGD:9068941
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link NW_004936619 1,276,239 1,308,945 RGD:9068941
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link NW_004936552 1,566,382 1,786,837 RGD:9068941
positive regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eed embryonic ectoderm development JBrowse link NW_004936498 14,050,731 14,082,410 RGD:9068941
G Mtf2 metal response element binding transcription factor 2 JBrowse link NW_004936537 6,071,435 6,134,144 RGD:9068941
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link NW_004936762 99,335 137,833 RGD:9068941
G Phf1 PHD finger protein 1 JBrowse link NW_004936476 25,481,938 25,487,026 RGD:9068941
G Phf19 PHD finger protein 19 JBrowse link NW_004936487 9,310,327 9,326,650 RGD:9068941
positive regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asxl2 ASXL transcriptional regulator 2 JBrowse link NW_004936493 6,463,771 6,602,244 RGD:9068941
G Kpna7 karyopherin subunit alpha 7 JBrowse link NW_004936750 1,496,735 1,519,759 RGD:9068941
G Znf304 zinc finger protein 304 JBrowse link NW_004936897 244,051 253,580 RGD:9068941
positive regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Paxip1 PAX interacting protein 1 JBrowse link NW_004936527 9,440,129 9,488,215 RGD:9068941
positive regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd4 bromodomain containing 4 JBrowse link NW_004936596 5,176,682 5,246,102 RGD:9068941
G Nsd3 nuclear receptor binding SET domain protein 3 JBrowse link NW_004936710 1,629,178 1,732,827 RGD:9068941
positive regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Auts2 activator of transcription and developmental regulator AUTS2 JBrowse link NW_004936543 5,146,961 6,187,634 RGD:9068941
G Brca1 BRCA1 DNA repair associated JBrowse link NW_004936490 17,735,444 17,801,456 RGD:9068941
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936528 7,585,937 7,613,022 RGD:9068941
G Dnmt1 DNA methyltransferase 1 JBrowse link NW_004936659 520,181 565,496 RGD:9068941
G Dnmt3b DNA methyltransferase 3 beta JBrowse link NW_004936485 19,547,836 19,570,716 RGD:9068941
G Gcg glucagon JBrowse link NW_004936469 16,906,658 16,916,045 RGD:9068941
G Kmt2a lysine methyltransferase 2A JBrowse link NW_004936542 3,480,071 3,566,823 RGD:9068941
G Myb MYB proto-oncogene, transcription factor JBrowse link NW_004936560 2,797,943 2,828,813 RGD:9068941
G Nelfa negative elongation factor complex member A JBrowse link NW_004936477 21,442,493 21,459,999 RGD:9068941
G Nelfe negative elongation factor complex member E JBrowse link NW_004936727 1,589,942 1,596,009 RGD:9068941
G Paxip1 PAX interacting protein 1 JBrowse link NW_004936527 9,440,129 9,488,215 RGD:9068941
G Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936471 4,770,060 4,829,562 RGD:9068941
G Smad4 SMAD family member 4 JBrowse link NW_004936497 12,242,869 12,278,012 RGD:9068941
G Snw1 SNW domain containing 1 JBrowse link NW_004936488 6,494,556 6,531,297 RGD:9068941
G Wdr5 WD repeat domain 5 JBrowse link NW_004936669 2,943,759 2,959,788 RGD:9068941
G Wdr61 WD repeat domain 61 JBrowse link NW_004936471 36,704,236 36,723,675 RGD:9068941
positive regulation of histone H3-K4 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kmt2e lysine methyltransferase 2E (inactive) JBrowse link NW_004936479 18,674,657 18,764,177 RGD:9068941
positive regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936528 7,585,937 7,613,022 RGD:9068941
G Wdr61 WD repeat domain 61 JBrowse link NW_004936471 36,704,236 36,723,675 RGD:9068941
positive regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 DMRT like family C2 JBrowse link NW_004936706 582,541 586,735 RGD:9068941
G Prdm12 PR/SET domain 12 JBrowse link NW_004936487 17,656,311 17,670,074 RGD:9068941
positive regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1 DNA repair associated JBrowse link NW_004936490 17,735,444 17,801,456 RGD:9068941
G Gfi1b growth factor independent 1B transcriptional repressor JBrowse link NW_004936487 19,414,135 19,417,465 RGD:9068941
G H1-5 H1.5 linker histone, cluster member JBrowse link NW_004936671 3,163,792 3,164,532 RGD:9068941
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link NW_004936552 1,566,382 1,786,837 RGD:9068941
G Myb MYB proto-oncogene, transcription factor JBrowse link NW_004936560 2,797,943 2,828,813 RGD:9068941
G Prdm12 PR/SET domain 12 JBrowse link NW_004936487 17,656,311 17,670,074 RGD:9068941
G Rif1 replication timing regulatory factor 1 JBrowse link NW_004936469 26,045,500 26,105,980 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004936521 10,296,097 10,316,673 RGD:9068941
positive regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 DMRT like family C2 JBrowse link NW_004936706 582,541 586,735 RGD:9068941
G Lmna lamin A/C JBrowse link NW_004936580 5,374,208 5,395,442 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004936809 902,938 967,771 RGD:9068941
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link NW_004936721 646,778 661,144 RGD:9068941
G Znf304 zinc finger protein 304 JBrowse link NW_004936897 244,051 253,580 RGD:9068941
positive regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1 DNA repair associated JBrowse link NW_004936490 17,735,444 17,801,456 RGD:9068941
positive regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chtop chromatin target of PRMT1 JBrowse link NW_004936580 3,436,260 3,444,522 RGD:9068941
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 JBrowse link NW_004936492 642,434 666,402 RGD:9068941
G Men1 menin 1 JBrowse link NW_004936599 4,504,489 4,510,085 RGD:9068941
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936661 2,236,121 2,241,086 RGD:9068941
G Pax7 paired box 7 JBrowse link NW_004936474 5,045,284 5,131,859 RGD:9068941
G Paxbp1 PAX3 and PAX7 binding protein 1 JBrowse link NW_004936500 9,447,091 9,481,612 RGD:9068941
G Rnf20 ring finger protein 20 JBrowse link NW_004936524 9,690,611 9,715,579 RGD:9068941
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link NW_004936521 9,646,581 9,765,244 RGD:9068941
G Xbp1 X-box binding protein 1 JBrowse link NW_004936657 2,891,171 2,895,409 RGD:9068941
regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsd1 nuclear receptor binding SET domain protein 1 JBrowse link NW_004936597 1,426,318 1,577,193 RGD:9068941
regulation of histone H3-K36 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link NW_004936469 43,766,699 43,805,919 RGD:9068941
regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcfl CCCTC-binding factor like JBrowse link NW_004936530 312,630 335,929 RGD:9068941
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link NW_004936727 1,648,451 1,663,294 RGD:9068941
G Gata3 GATA binding protein 3 JBrowse link NW_004936484 6,780,692 6,800,883 RGD:9068941
G Kmt2a lysine methyltransferase 2A JBrowse link NW_004936542 3,480,071 3,566,823 RGD:9068941
G Kmt2b lysine methyltransferase 2B JBrowse link NW_004936570 583,616 605,846 RGD:9068941
G Pih1d1 PIH1 domain containing 1 JBrowse link NW_004936664 3,321,278 3,326,720 RGD:9068941
G Pygo2 pygopus family PHD finger 2 JBrowse link NW_004936580 4,506,982 4,511,044 RGD:9068941
G Znf335 zinc finger protein 335 JBrowse link NW_004936514 7,070,030 7,090,466 RGD:9068941
regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link NW_004936727 1,648,451 1,663,294 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004936809 902,938 967,771 RGD:9068941
G Setd7 SET domain containing 7, histone lysine methyltransferase JBrowse link NW_004936535 8,094,479 8,143,108 RGD:9068941
regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX chromatin remodeler JBrowse link NW_004936683 2,496,307 2,718,539 RGD:9068941
G Znf274 zinc finger protein 274 JBrowse link NW_004936897 657,094 672,964 RGD:9068941
regulation of histone H4-K20 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ttll12 tubulin tyrosine ligase like 12 JBrowse link NW_004936718 996,758 1,013,372 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11933
    metabolic process 7631
      methylation 260
        macromolecule methylation 249
          protein methylation 165
            histone methylation 132
              regulation of histone methylation 76
                negative regulation of histone methylation + 25
                positive regulation of histone methylation + 46
                regulation of histone H3-K27 methylation + 12
                regulation of histone H3-K36 methylation + 7
                regulation of histone H3-K4 methylation + 29
                regulation of histone H3-K79 methylation + 3
                regulation of histone H3-K9 methylation + 28
                regulation of histone H4-K20 methylation + 2
Path 2
Term Annotations click to browse term
  biological_process 11933
    metabolic process 7631
      organic substance metabolic process 7329
        macromolecule metabolic process 6362
          protein metabolic process 3865
            protein modification process 2885
              cellular protein modification process 2885
                protein alkylation 165
                  protein methylation 165
                    histone methylation 132
                      regulation of histone methylation 76
                        negative regulation of histone methylation + 25
                        positive regulation of histone methylation + 46
                        regulation of histone H3-K27 methylation + 12
                        regulation of histone H3-K36 methylation + 7
                        regulation of histone H3-K4 methylation + 29
                        regulation of histone H3-K79 methylation + 3
                        regulation of histone H3-K9 methylation + 28
                        regulation of histone H4-K20 methylation + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.