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ONTOLOGY REPORT - ANNOTATIONS


Term:biomineral tissue development
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Accession:GO:0031214 term browser browse the term
Definition:Formation of hard tissues that consist mainly of inorganic compounds, and also contain a small amounts of organic matrices that are believed to play important roles in their formation.
Synonyms:xref: Wikipedia:Biomineralization


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biomineral tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambn ameloblastin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:21,239,887...21,252,534
Ensembl chr14:21,240,398...21,252,538
JBrowse link
G Amtn amelotin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:21,282,488...21,301,966
Ensembl chr14:21,286,510...21,299,068
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (MGI:MGI:5318020|PMID:19900459) RGD PMID:19900459 MGI:MGI:5318020 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link
G Dspp dentin sialophosphoprotein IEP RGD PMID:20425127 RGD:4110819 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Ecm1 extracellular matrix protein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Fam20a FAM20A, golgi associated secretory pathway pseudokinase ISO (PMID:25789606) RGD PMID:25789606 NCBI chr10:97,962,467...98,017,171
Ensembl chr10:97,962,693...98,018,014
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO (PMID:22582013), (PMID:25789606) RGD PMID:22582013, PMID:25789606 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Mepe matrix extracellular phosphoglycoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:6,782,011...6,793,561
Ensembl chr14:6,782,012...6,793,558
JBrowse link
G Odam odontogenic, ameloblast associated IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:21,842,990...21,852,216
Ensembl chr14:21,842,990...21,852,216
JBrowse link
G Otop1 otopetrin 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:77,236,278...77,263,729
Ensembl chr14:77,236,278...77,263,729
JBrowse link
G Prh1 proline rich protein HaeIII subfamily 1 IEA GO_REF:0000043 UniProt GO_REF:0000043
G Prr4 proline rich 4 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:167,419,911...167,485,225
Ensembl chr 4:167,351,697...167,485,225
JBrowse link
G Slc20a1 solute carrier family 20 member 1 ISO (MGI:MGI:5812283|PMID:27812542) RGD PMID:27812542 MGI:MGI:5812283 NCBI chr 3:121,725,204...121,739,160
Ensembl chr 3:121,725,859...121,739,173
JBrowse link
G Spp1 secreted phosphoprotein 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:6,673,686...6,679,965
Ensembl chr14:6,673,686...6,679,901
JBrowse link
G Srgn serglycin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr20:32,120,317...32,158,071
Ensembl chr20:32,120,320...32,139,789
JBrowse link
G Stath statherin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:21,957,013...21,960,871
Ensembl chr14:21,957,013...21,960,871
JBrowse link
G Tfip11 tuftelin interacting protein 11 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr12:50,320,820...50,333,052
Ensembl chr12:50,320,821...50,333,052
JBrowse link
bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox15 arachidonate 15-lipoxygenase ISO
ISS
MGI:MGI:1857428 (MGI:MGI:2686849|PMID:14716014)
GO_REF:0000024
RGD
UniProt
PMID:14716014 GO_REF:0000024, MGI:MGI:2686849 NCBI chr10:56,953,692...56,962,145
Ensembl chr10:56,953,691...56,962,161
JBrowse link
G Asgr2 asialoglycoprotein receptor 2 IEP RGD PMID:19841953 RGD:2316850 NCBI chr10:56,710,446...56,723,608
Ensembl chr10:56,710,464...56,723,611
JBrowse link
G Aspn asporin ISO (PMID:19589127) RGD PMID:19589127 NCBI chr17:14,655,958...14,681,355
Ensembl chr17:14,656,009...14,679,409
JBrowse link
G Atf4 activating transcription factor 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:3040115|PMID:15109498)
UniProt
RGD
PMID:15109498 GO_REF:0000024, MGI:MGI:3040115 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Axin2 axin 2 ISO
IEA
MGI:MGI:3579503 (MGI:MGI:4818263|PMID:19623616)
GO_REF:0000107
RGD
Ensembl
PMID:19623616 GO_REF:0000107, MGI:MGI:4818263 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO MGI:MGI:101948|MGI:MGI:1922667 (MGI:MGI:3528531|PMID:15657444), (MGI:MGI:3850932|PMID:19213727) RGD PMID:15657444, PMID:19213727 MGI:MGI:3528531, MGI:MGI:3850932 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO (PMID:19113921) RGD PMID:19113921 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Clec3b C-type lectin domain family 3, member B ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:7589422), (PMID:7798325)
UniProt
RGD
PMID:7589422, PMID:7798325, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:132,241,016...132,248,066
Ensembl chr 8:132,241,134...132,246,694
JBrowse link
G Col1a2 collagen type I alpha 2 chain ISO MGI:MGI:1856327 (MGI:MGI:5468210|PMID:22910579) RGD PMID:22910579 MGI:MGI:5468210 NCBI chr 4:31,534,225...31,569,152
Ensembl chr 4:31,534,225...31,569,151
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
(MGI:MGI:6100855|PMID:27151399)
GO_REF:0000107
RGD
Ensembl
PMID:27151399 GO_REF:0000107, MGI:MGI:6100855 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:17023519) RGD PMID:17023519 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 ISO MGI:MGI:3526402 (MGI:MGI:5780798|PMID:21308776) RGD PMID:21308776 MGI:MGI:5780798 NCBI chr 6:133,576,513...133,583,751
Ensembl chr 6:133,552,821...133,583,751
JBrowse link
G Duox2 dual oxidase 2 ISO
IEA
MGI:MGI:3712359 (MGI:MGI:3712355|PMID:17440044)
GO_REF:0000107
RGD
Ensembl
PMID:17440044 GO_REF:0000107, MGI:MGI:3712355 NCBI chr 3:114,218,187...114,237,808
Ensembl chr 3:114,218,193...114,235,933
JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 ISO MGI:MGI:2183829 (MGI:MGI:2179907|PMID:11997520) RGD PMID:11997520 MGI:MGI:2179907 NCBI chr 4:98,648,513...98,709,695
Ensembl chr 4:98,648,545...98,709,694
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO MGI:MGI:2183949 (MGI:MGI:3692802|PMID:17020410) RGD PMID:17020410 MGI:MGI:3692802 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Fbxl15 F-box and leucine-rich repeat protein 15 IMP PMID:21572392 UniProt PMID:21572392 RGD:8554771 NCBI chr 1:266,075,782...266,078,023
Ensembl chr 1:266,075,782...266,078,023
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:MGI:3044427 (MGI:MGI:3043470|PMID:12756187) RGD PMID:12756187 MGI:MGI:3043470 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO (MGI:MGI:4457789|PMID:20582225) RGD PMID:20582225 MGI:MGI:4457789 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase ISO MGI:MGI:3665439 (MGI:MGI:3663851|PMID:16964445) RGD PMID:16964445 MGI:MGI:3663851 NCBI chr 5:151,172,189...151,199,746
Ensembl chr 5:151,172,206...151,199,745
JBrowse link
G Gla galactosidase, alpha NOT ISO MGI:MGI:1861794 (MGI:MGI:3692334|PMID:16697974) RGD PMID:16697974 MGI:MGI:3692334 NCBI chr  X:105,405,915...105,417,331
Ensembl chr  X:105,406,792...105,417,323
JBrowse link
G Gpc3 glypican 3 ISO
IEA
MGI:MGI:2159355 (MGI:MGI:3612305|PMID:15936336)
GO_REF:0000107
RGD
Ensembl
PMID:15936336 GO_REF:0000107, MGI:MGI:3612305 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Gpnmb glycoprotein nmb IEP RGD PMID:11746512 RGD:632991 NCBI chr 4:78,694,447...78,715,685
Ensembl chr 4:78,694,447...78,715,683
JBrowse link
G Ibsp integrin-binding sialoprotein ISO
IBA
IEA
MGI:MGI:3796255 (MGI:MGI:5614132|PMID:25464126)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:25464126, PMID:21873635 GO_REF:0000107, MGI:MGI:5614132, RGD:13792537 NCBI chr14:6,801,200...6,813,987
Ensembl chr14:6,801,204...6,813,945
JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase ISO MGI:MGI:1890508 (MGI:MGI:5500993|PMID:23686339) RGD PMID:23686339 MGI:MGI:5500993 NCBI chr 5:169,475,270...169,482,031
Ensembl chr 5:169,475,270...169,482,030
JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 ISO
IBA
(PMID:24519609)
PMID:21873635
(MGI:MGI:4359156|PMID:18442316), (MGI:MGI:5607401|PMID:20838829)
RGD PMID:18442316, PMID:20838829, PMID:24519609, PMID:21873635 MGI:MGI:4359156, MGI:MGI:5607401, RGD:13792537 NCBI chr 1:213,743,331...213,749,879
Ensembl chr 1:213,744,796...213,745,748
JBrowse link
G Klf10 Kruppel-like factor 10 ISO MGI:MGI:3530069 (MGI:MGI:3528531|PMID:15657444) RGD PMID:15657444 MGI:MGI:3528531 NCBI chr 7:77,156,010...77,162,096
Ensembl chr 7:77,156,006...77,162,148
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 ISO
ISS
(MGI:MGI:4360132|PMID:19605502)
GO_REF:0000024
RGD
UniProt
PMID:19605502 GO_REF:0000024, MGI:MGI:4360132 NCBI chr 3:101,051,960...101,152,119
Ensembl chr 3:101,051,955...101,152,119
JBrowse link
G Lox lysyl oxidase ISO MGI:MGI:3610732 (MGI:MGI:5603515|PMID:19458888) RGD PMID:19458888 MGI:MGI:5603515 NCBI chr18:47,500,320...47,577,819
Ensembl chr18:47,500,330...47,577,819
JBrowse link
G Mmp13 matrix metallopeptidase 13 IEA
ISO
GO_REF:0000107
MGI:MGI:3521852 (MGI:MGI:3513736|PMID:15563592), (MGI:MGI:3771509|PMID:17987127)
Ensembl
RGD
PMID:15563592, PMID:17987127 GO_REF:0000107, MGI:MGI:3513736, MGI:MGI:3771509 NCBI chr 8:5,522,739...5,533,018
Ensembl chr 8:5,522,739...5,533,018
JBrowse link
G Mtss1 MTSS I-BAR domain containing 1 ISO MGI:MGI:5319219 (MGI:MGI:5317250|PMID:21406566) RGD PMID:21406566 MGI:MGI:5317250 NCBI chr 7:98,820,799...98,960,878
Ensembl chr 7:98,820,812...98,960,837
JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked ISO MGI:MGI:1857312 (MGI:MGI:3851320|PMID:15843468) RGD PMID:15843468 MGI:MGI:3851320 NCBI chr  X:40,460,047...40,717,982
Ensembl chr  X:40,460,047...40,717,982
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO MGI:MGI:5014347 (MGI:MGI:5013998|PMID:21553379) RGD PMID:21553379 MGI:MGI:5013998 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IMP PMID:18519738 MGI PMID:18519738 RGD:8554572 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Pth1r parathyroid hormone 1 receptor ISO MGI:MGI:2154519 (MGI:MGI:2153596|PMID:11606467), (MGI:MGI:3624906|PMID:9832460) RGD PMID:9832460, PMID:11606467 MGI:MGI:2153596, MGI:MGI:3624906 NCBI chr 8:118,984,531...119,012,803
Ensembl chr 8:118,988,053...119,012,671
JBrowse link
G Pthlh parathyroid hormone-like hormone NOT ISO MGI:MGI:2154515 (MGI:MGI:2153596|PMID:11606467) RGD PMID:11606467 MGI:MGI:2153596 NCBI chr 4:181,663,425...181,674,181 JBrowse link
G Ptn pleiotrophin ISO (MGI:MGI:2429445|PMID:12413943) RGD PMID:12413943 MGI:MGI:2429445 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 IEP RGD PMID:23337931 RGD:11537369 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386
JBrowse link
G Rspo2 R-spondin 2 ISO MGI:MGI:101948|MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 7:81,919,911...82,059,659
Ensembl chr 7:81,924,050...82,059,789
JBrowse link
G Sbds SBDS, ribosome maturation factor ISO (PMID:17920346) RGD PMID:17920346 NCBI chr12:29,921,443...29,930,602
Ensembl chr12:29,921,443...29,930,600
JBrowse link
G Sbno2 strawberry notch homolog 2 ISO MGI:MGI:5551983 (MGI:MGI:5522615|PMID:23980096) RGD PMID:23980096 MGI:MGI:5522615 NCBI chr 7:12,471,805...12,515,700
Ensembl chr 7:12,471,824...12,518,654
JBrowse link
G Slc24a3 solute carrier family 24 member 3 ISO (MGI:MGI:6104227|PMID:28602864) RGD PMID:28602864 MGI:MGI:6104227 NCBI chr 3:139,333,942...139,835,728
Ensembl chr 3:139,695,028...139,833,967
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 IEA
ISO
GO_REF:0000107
MGI:MGI:1856877 (MGI:MGI:5293259|PMID:21788370), (MGI:MGI:5584216|PMID:24585429)
Ensembl
RGD
PMID:21788370, PMID:24585429 GO_REF:0000107, MGI:MGI:5293259, MGI:MGI:5584216 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:MGI:101948 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
G Tmem38b transmembrane protein 38B ISO MGI:MGI:1921416 (MGI:MGI:6141091|PMID:27188440) RGD PMID:27188440 MGI:MGI:6141091 NCBI chr 5:70,639,156...70,675,055
Ensembl chr 5:70,639,156...70,675,054
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:88177 (MGI:MGI:3850932|PMID:19213727) RGD PMID:19213727 MGI:MGI:3850932 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:1888594 (MGI:MGI:5500993|PMID:23686339) RGD PMID:23686339 MGI:MGI:5500993 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano6 anoctamin 6 ISO MGI:MGI:4127698 (MGI:MGI:5486117|PMID:22936354) RGD PMID:22936354 MGI:MGI:5486117 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO
ISS
(PMID:16433617)
GO_REF:0000024
RGD
UniProt
PMID:16433617 GO_REF:0000024 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Ccdc154 coiled-coil domain containing 154 ISO MGI:MGI:5702426 (MGI:MGI:5697796|PMID:20121924) RGD PMID:20121924 MGI:MGI:5697796 NCBI chr10:14,518,240...14,529,920
Ensembl chr10:14,519,164...14,528,277
JBrowse link
G Ift80 intraflagellar transport 80 ISO MGI:MGI:3689350|MGI:MGI:5818514 (MGI:MGI:5807019|PMID:26996322) RGD PMID:26996322 MGI:MGI:5807019 NCBI chr 2:165,506,878...165,600,748
Ensembl chr 2:165,505,810...165,600,748
JBrowse link
G Igf1 insulin-like growth factor 1 ISO
IEA
(PMID:16433617)
GO_REF:0000107
RGD
Ensembl
PMID:16433617 GO_REF:0000107 NCBI chr 7:28,412,123...28,491,815
Ensembl chr 7:28,412,198...28,486,609
JBrowse link
G Lep leptin IDA RGD PMID:21353474 RGD:5128507 NCBI chr 4:56,337,695...56,351,818
Ensembl chr 4:56,337,695...56,351,818
JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 ISO
IBA
MGI:MGI:5049904 (MGI:MGI:5008224|PMID:21272676)
PMID:21873635
RGD PMID:21272676, PMID:21873635 MGI:MGI:5008224, RGD:13792537 NCBI chr10:83,635,557...83,643,862
Ensembl chr10:83,636,518...83,643,859
JBrowse link
G Snx10 sorting nexin 10 ISO MGI:MGI:5690193 (MGI:MGI:5688814|PMID:25811986) RGD PMID:25811986 MGI:MGI:5688814 NCBI chr 4:81,311,490...81,375,248
Ensembl chr 4:81,311,490...81,374,158
JBrowse link
cementum mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated IEP RGD PMID:17043865 RGD:2316162 NCBI chr 5:156,086,496...156,141,513
Ensembl chr 5:156,086,497...156,141,537
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 ISO (PMID:25263524) RGD PMID:25263524 NCBI chr17:81,173,238...81,196,012
Ensembl chr17:81,173,713...81,187,739
JBrowse link
dentin mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5469811|PMID:23174213) RGD PMID:23174213 MGI:MGI:5469811 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked ISO (PMID:1916828)
(PMID:21653221)
RGD PMID:1916828, PMID:21653221 NCBI chr  X:26,439,197...26,450,495
Ensembl chr  X:26,439,197...26,450,495
JBrowse link
G Cnnm4 cyclin and CBS domain divalent metal cation transport mediator 4 ISO (MGI:MGI:5559016|PMID:24339795) RGD PMID:24339795 MGI:MGI:5559016 NCBI chr 9:43,049,587...43,088,690
Ensembl chr 9:43,049,587...43,088,702
JBrowse link
G Fam20a FAM20A, golgi associated secretory pathway pseudokinase ISO
IBA
MGI:MGI:5432376 (MGI:MGI:5432245|PMID:22732358)
PMID:21873635
(PMID:21549343), (PMID:21990045), (PMID:23468644)
RGD PMID:21549343, PMID:21990045, PMID:22732358, PMID:23468644, PMID:21873635 MGI:MGI:5432245, RGD:13792537 NCBI chr10:97,962,467...98,017,171
Ensembl chr10:97,962,693...98,018,014
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO
IBA
MGI:MGI:5432377 (MGI:MGI:5432245|PMID:22732358)
PMID:21873635
RGD PMID:22732358, PMID:21873635 MGI:MGI:5432245, RGD:13792537 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Foxo1 forkhead box O1 IEP RGD PMID:25183529 RGD:10044263 NCBI chr 2:141,451,234...141,527,016
Ensembl chr 2:141,451,234...141,527,016
JBrowse link
G Itgb6 integrin subunit beta 6 ISO MGI:MGI:1926484 (MGI:MGI:5507902|PMID:23264742) RGD PMID:23264742 MGI:MGI:5507902 NCBI chr 3:46,652,624...46,775,362
Ensembl chr 3:46,652,623...46,726,958
JBrowse link
G Msx2 msh homeobox 2 ISO
IEA
MGI:MGI:1926381 (MGI:MGI:1355063|PMID:10742104)
GO_REF:0000107
RGD
Ensembl
PMID:10742104 GO_REF:0000107, MGI:MGI:1355063 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3814719 (MGI:MGI:3814115|PMID:18703497) RGD PMID:18703497 MGI:MGI:3814115 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO MGI:MGI:1857774 (MGI:MGI:3843118|PMID:19320717) RGD PMID:19320717 MGI:MGI:3843118 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Stim1 stromal interaction molecule 1 ISO
ISS
(PMID:24621671)
GO_REF:0000024
RGD
UniProt
PMID:24621671 GO_REF:0000024 NCBI chr 1:167,373,894...167,533,412
Ensembl chr 1:167,373,678...167,533,420
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2179136 (MGI:MGI:3848106|PMID:19233155)
GO_REF:0000024
RGD
UniProt
PMID:19233155 GO_REF:0000024, MGI:MGI:3848106 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5469811|PMID:23174213) RGD PMID:23174213 MGI:MGI:5469811 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Wdr72 WD repeat domain 72 ISO MGI:MGI:4363147|MGI:MGI:5913851 (MGI:MGI:5605934|PMID:25008349), (MGI:MGI:5906533|PMID:26247047) RGD PMID:25008349, PMID:26247047 MGI:MGI:5605934, MGI:MGI:5906533 NCBI chr 8:80,965,734...81,125,710
Ensembl chr 8:80,965,255...81,039,246
JBrowse link
negative regulation of biomineral tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gas6 growth arrest specific 6 ISO
ISS
(PMID:20048160)
GO_REF:0000024
RGD
UniProt
PMID:20048160 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Hey1 hes-related family bHLH transcription factor with YRPW motif 1 ISO (MGI:MGI:6158746|PMID:22110751) RGD PMID:22110751 MGI:MGI:6158746 NCBI chr 2:95,320,147...95,322,701
Ensembl chr 2:95,320,283...95,322,696
JBrowse link
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 ISO (MGI:MGI:6158746|PMID:22110751) RGD PMID:22110751 MGI:MGI:6158746 NCBI chr 1:29,191,170...29,201,257
Ensembl chr 1:29,191,192...29,201,531
JBrowse link
G Nos3 nitric oxide synthase 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:6158885|PMID:23583836)
Ensembl
RGD
PMID:23583836 GO_REF:0000107, MGI:MGI:6158885 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:6158728|PMID:26491108), (MGI:MGI:6158885|PMID:23583836) RGD PMID:23583836, PMID:26491108 MGI:MGI:6158728, MGI:MGI:6158885 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 ISO UniProtKB:M3TYT0 (PMID:26634652) RGD PMID:26634652 NCBI chr18:1,273,490...1,390,790
Ensembl chr18:1,273,453...1,390,190
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 ISO UniProtKB:I3LFH3 (PMID:26634652) RGD PMID:26634652 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
(MGI:MGI:4947506|PMID:20056916)
(PMID:22110751)
GO_REF:0000024
RGD
UniProt
PMID:20056916, PMID:22110751 GO_REF:0000024, MGI:MGI:4947506 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (PMID:26634652)
(MGI:MGI:5921830|PMID:26634652)
RGD PMID:26634652 MGI:MGI:5921830 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
negative regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahsg alpha-2-HS-glycoprotein IMP
ISS
ISO
GO_REF:0000024
(MGI:MGI:3687916|PMID:12556469)
UniProt
RGD
PMID:12556469, PMID:8702833 GO_REF:0000024, MGI:MGI:3687916, RGD:1626074 NCBI chr11:81,711,269...81,717,594 JBrowse link
G Bcor BCL6 co-repressor ISO (PMID:19578371) RGD PMID:19578371 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO (PMID:21403648) RGD PMID:21403648 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccr1 C-C motif chemokine receptor 1 ISO (PMID:21403648) RGD PMID:21403648 NCBI chr 8:132,996,646...133,002,201
Ensembl chr 8:132,996,649...133,002,201
JBrowse link
G Ecm1 extracellular matrix protein 1 ISO
ISS
(PMID:11165938)
GO_REF:0000024
RGD
UniProt
PMID:11165938 GO_REF:0000024 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:5607146|PMID:25479107), (MGI:MGI:6220772|PMID:30111653), (MGI:MGI:6294341|PMID:22510396)
UniProt
RGD
PMID:22510396, PMID:25479107, PMID:30111653 GO_REF:0000024, MGI:MGI:5607146, MGI:MGI:6220772, MGI:MGI:6294341 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO (PMID:18282132) RGD PMID:18282132 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Gata1 GATA binding protein 1 ISO MGI:MGI:2177586 (MGI:MGI:3653541|PMID:15005853) RGD PMID:15005853 MGI:MGI:3653541 NCBI chr  X:15,273,937...15,281,759
Ensembl chr  X:15,378,789...15,382,066
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha ISO
IEA
MGI:MGI:1857719 (MGI:MGI:3777866|PMID:17181398)
GO_REF:0000107
RGD
Ensembl
PMID:17181398 GO_REF:0000107, MGI:MGI:3777866 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 ISO MGI:MGI:2180017 (MGI:MGI:2178869|PMID:11790802) RGD PMID:11790802 MGI:MGI:2178869 NCBI chr 1:221,099,155...221,116,096
Ensembl chr 1:221,099,998...221,116,096
JBrowse link
G Mepe matrix extracellular phosphoglycoprotein ISO MGI:MGI:2448895 (MGI:MGI:2448336|PMID:12421822), (MGI:MGI:3851320|PMID:15843468), (MGI:MGI:5431257|PMID:22766095) RGD PMID:12421822, PMID:15843468, PMID:22766095 MGI:MGI:2448336, MGI:MGI:3851320, MGI:MGI:5431257 NCBI chr14:6,782,011...6,793,561
Ensembl chr14:6,782,012...6,793,558
JBrowse link
G Nfe2 nuclear factor, erythroid 2 ISO MGI:MGI:1857224 (MGI:MGI:3653541|PMID:15005853) RGD PMID:15005853 MGI:MGI:3653541 NCBI chr 7:144,872,739...144,880,092
Ensembl chr 7:144,872,747...144,880,092
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO
ISS
(MGI:MGI:3713957|PMID:17537919)
GO_REF:0000024
RGD
UniProt
PMID:17537919 GO_REF:0000024, MGI:MGI:3713957 NCBI chr15:42,827,306...42,947,796
Ensembl chr15:42,827,310...42,947,656
JBrowse link
G Sox9 SRY-box transcription factor 9 ISO MGI:MGI:2158693 (MGI:MGI:2135696|PMID:11371614) RGD PMID:11371614 MGI:MGI:2135696 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Srgn serglycin ISO
IBA
ISS
(PMID:16870619)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:16870619, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:32,120,317...32,158,071
Ensembl chr20:32,120,320...32,139,789
JBrowse link
G Trpm4 transient receptor potential cation channel, subfamily M, member 4 IMP RGD PMID:23081848 RGD:10003033 NCBI chr 1:101,293,300...101,323,484
Ensembl chr 1:101,293,409...101,323,960
JBrowse link
negative regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grem1 gremlin 1, DAN family BMP antagonist ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:105,203,309...105,214,989
Ensembl chr 3:105,203,309...105,214,989
JBrowse link
G Pth parathyroid hormone IMP PMID:11604398 CAFA PMID:11604398 RGD:12793028 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Rflna refilin A ISO
IBA
MGI:MGI:1923816 (MGI:MGI:5570967|PMID:24436304)
PMID:21873635
RGD PMID:24436304, PMID:21873635 MGI:MGI:5570967, RGD:13792537 NCBI chr12:37,038,732...37,047,628
Ensembl chr12:37,038,733...37,047,628
JBrowse link
G Rflnb refilin B ISO
IBA
MGI:MGI:1920371 (MGI:MGI:5570967|PMID:24436304)
PMID:21873635
RGD PMID:24436304, PMID:21873635 MGI:MGI:5570967, RGD:13792537 NCBI chr10:64,196,103...64,202,380
Ensembl chr10:64,196,127...64,202,380
JBrowse link
negative regulation of tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspn asporin ISO (MGI:MGI:3722035|PMID:17522060) RGD PMID:17522060 MGI:MGI:3722035 NCBI chr17:14,655,958...14,681,355
Ensembl chr17:14,656,009...14,679,409
JBrowse link
G Bcor BCL6 co-repressor ISO (PMID:19578371) RGD PMID:19578371 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:MGI:1857876 (MGI:MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Oc90 otoconin 90 ISO (MGI:MGI:5896790|PMID:21655225), (MGI:MGI:6189500|PMID:24748133) RGD PMID:21655225, PMID:24748133 MGI:MGI:5896790, MGI:MGI:6189500 NCBI chr 7:106,615,859...106,697,089
Ensembl chr 7:106,619,326...106,653,567
JBrowse link
G Otol1 otolin 1 ISO (MGI:MGI:5896790|PMID:21655225), (MGI:MGI:6189500|PMID:24748133), (MGI:MGI:6189669|PMID:29076638) RGD PMID:21655225, PMID:24748133, PMID:29076638 MGI:MGI:5896790, MGI:MGI:6189500, MGI:MGI:6189669 NCBI chr 2:166,845,543...166,866,513
Ensembl chr 2:166,856,784...166,866,195
JBrowse link
positive regulation of biomineral tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amtn amelotin ISO (PMID:25407797) RGD PMID:25407797 NCBI chr14:21,282,488...21,301,966
Ensembl chr14:21,286,510...21,299,068
JBrowse link
G Atf4 activating transcription factor 4 ISO MGI:MGI:2180373|MGI:MGI:3819270|MGI:MGI:5550363|MGI:MGI:5812282 (MGI:MGI:5812283|PMID:27812542) RGD PMID:27812542 MGI:MGI:5812283 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta ISO (PMID:27812542) RGD PMID:27812542 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Fbxo5 F-box protein 5 ISO (PMID:29850565) RGD PMID:29850565 NCBI chr 1:42,461,277...42,467,646
Ensembl chr 1:42,461,291...42,467,586
JBrowse link
G Odaph odontogenesis associated phosphoprotein ISO
ISS
(PMID:22901946)
GO_REF:0000024
RGD
UniProt
PMID:22901946 GO_REF:0000024 NCBI chr14:17,575,295...17,583,214
Ensembl chr14:17,575,758...17,582,823
JBrowse link
positive regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B ISO
IEA
(PMID:18436533)
GO_REF:0000107
RGD
Ensembl
PMID:18436533 GO_REF:0000107 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:MGI:6211994|PMID:22419726) RGD PMID:22419726 MGI:MGI:6211994 NCBI chr 2:8,926,843...9,504,455
Ensembl chr 2:8,926,850...9,504,134
JBrowse link
G Adrb2 adrenoceptor beta 2 ISO
IEA
MGI:MGI:1859675 (MGI:MGI:3575849|PMID:15724149)
GO_REF:0000107
RGD
Ensembl
PMID:15724149 GO_REF:0000107, MGI:MGI:3575849 NCBI chr18:57,513,792...57,515,834
Ensembl chr18:57,513,793...57,515,834
JBrowse link
G Alox5 arachidonate 5-lipoxygenase ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6393219|PMID:24906289)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24906289 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6393219 NCBI chr 4:148,398,004...148,446,308
Ensembl chr 4:148,398,892...148,446,303
JBrowse link
G Ano6 anoctamin 6 ISO (PMID:25589784)
(MGI:MGI:5634871|PMID:25589784)
RGD PMID:25589784 MGI:MGI:5634871 NCBI chr 7:137,142,063...137,335,208
Ensembl chr 7:137,142,170...137,335,208
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:5780494|PMID:26392310)
UniProt
RGD
PMID:26392310 GO_REF:0000024, MGI:MGI:5780494 NCBI chr 7:41,114,606...41,223,138
Ensembl chr 7:41,114,697...41,220,579
JBrowse link
G Atraid all-trans retinoic acid-induced differentiation factor ISO (PMID:21723284) RGD PMID:21723284 NCBI chr 6:26,680,628...26,685,185
Ensembl chr 6:26,680,598...26,685,235
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:5009350|PMID:20675382)
(PMID:18436533), (PMID:20576608)
UniProt
RGD
PMID:18436533, PMID:20576608, PMID:20675382 GO_REF:0000024, MGI:MGI:5009350 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 IDA
ISO
ISS
IEA
(PMID:14749725), (PMID:18436533)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:14749725, PMID:18436533, PMID:15352071 GO_REF:0000024, GO_REF:0000107, RGD:9068399 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp6 bone morphogenetic protein 6 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr17:26,955,142...27,112,820
Ensembl chr17:26,955,142...27,112,820
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (PMID:18436533) RGD PMID:18436533 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 2:247,392,195...247,662,026
Ensembl chr 2:247,403,920...247,446,882
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO (PMID:18436533) RGD PMID:18436533 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Ccn1 cellular communication network factor 1 IEA
ISO
GO_REF:0000107
(PMID:20675382)
Ensembl
RGD
PMID:20675382 GO_REF:0000107 NCBI chr 2:251,529,354...251,532,312
Ensembl chr 2:251,529,354...251,532,312
JBrowse link
G Cd276 Cd276 molecule ISO MGI:MGI:3033707 (MGI:MGI:3052626|PMID:15317945) RGD PMID:15317945 MGI:MGI:3052626 NCBI chr 8:63,312,060...63,350,411
Ensembl chr 8:63,318,019...63,350,269
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO (MGI:MGI:3715055|PMID:17369251), (MGI:MGI:5427766|PMID:22615579) RGD PMID:17369251, PMID:22615579 MGI:MGI:3715055, MGI:MGI:5427766 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Fbn2 fibrillin 2 ISO (MGI:MGI:4836762|PMID:20855508) RGD PMID:20855508 MGI:MGI:4836762 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:2135670 (MGI:MGI:4437389|PMID:20053668) RGD PMID:20053668 MGI:MGI:4437389 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G Fzd9 frizzled class receptor 9 ISO
ISS
(MGI:MGI:4943600|PMID:21402791)
GO_REF:0000024
RGD
UniProt
PMID:21402791 GO_REF:0000024, MGI:MGI:4943600 NCBI chr12:24,473,981...24,476,295
Ensembl chr12:24,473,981...24,476,295
JBrowse link
G Gpm6b glycoprotein m6b IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21638316)
Ensembl
UniProt
RGD
PMID:21638316 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:29,604,607...29,751,174
Ensembl chr  X:29,607,075...29,648,403
JBrowse link
G Isg15 ISG15 ubiquitin-like modifier ISO (MGI:MGI:4943600|PMID:21402791) RGD PMID:21402791 MGI:MGI:4943600 NCBI chr 5:173,624,862...173,629,124
Ensembl chr 5:173,624,310...173,626,248
JBrowse link
G Kl Klotho IEA
ISO
GO_REF:0000107
(PMID:12110410)
Ensembl
RGD
PMID:12110410 GO_REF:0000107 NCBI chr12:942,974...987,206
Ensembl chr12:943,006...987,551
JBrowse link
G Mef2c myocyte enhancer factor 2C IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5285459|PMID:21652706)
Ensembl
UniProt
RGD
PMID:21652706 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5285459 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787
JBrowse link
G Mia3 MIA SH3 domain ER export factor 3 ISO MGI:MGI:5007248 (MGI:MGI:5008683|PMID:21606205) RGD PMID:21606205 MGI:MGI:5008683 NCBI chr13:101,727,434...101,770,127
Ensembl chr13:101,727,935...101,761,541
JBrowse link
G Nell1 neural EGFL like 1 ISO
ISS
(PMID:21723284)
GO_REF:0000024
RGD
UniProt
PMID:21723284 GO_REF:0000024 NCBI chr 1:105,348,577...106,218,970
Ensembl chr 1:105,349,069...106,218,958
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G P2rx7 purinergic receptor P2X 7 ISO MGI:MGI:2386080 (MGI:MGI:2667237|PMID:12677010), (MGI:MGI:3797675|PMID:18519738) RGD PMID:12677010, PMID:18519738 MGI:MGI:2667237, MGI:MGI:3797675 NCBI chr12:39,353,613...39,396,042
Ensembl chr12:39,353,613...39,396,042
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic ISO (MGI:MGI:3813934|PMID:19097194) RGD PMID:19097194 MGI:MGI:3813934 NCBI chr 6:6,427,657...6,436,974
Ensembl chr 6:6,427,657...6,436,974
JBrowse link
G Pla2g4a phospholipase A2 group IVA IEP RGD PMID:10807497 RGD:1642474 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Pth parathyroid hormone IDA
ISO
(PMID:17696759) RGD PMID:17696759, PMID:15758479, PMID:22445539 RGD:7207452, RGD:7242906 NCBI chr 1:178,215,829...178,218,761
Ensembl chr 1:178,215,829...178,218,761
JBrowse link
G Ptn pleiotrophin ISS
ISO
GO_REF:0000024
(MGI:MGI:6294181|PMID:19442624)
UniProt
RGD
PMID:19442624 GO_REF:0000024, MGI:MGI:6294181 NCBI chr 4:64,239,156...64,330,996
Ensembl chr 4:64,239,158...64,330,996
JBrowse link
G Slc8a1 solute carrier family 8 member A1 ISO (PMID:25589784) RGD PMID:25589784 NCBI chr 6:4,244,076...4,564,262
Ensembl chr 6:4,258,991...4,520,604
JBrowse link
G Smad3 SMAD family member 3 IDA rat gene expressed in mouse osteoblastic cell line MC3T3-E1; TGF-beta down-regulates this activity RGD PMID:12096832 RGD:727387 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
IEA
ISS
(PMID:19578371)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19578371 GO_REF:0000024, GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO
ISS
(PMID:17401695)
GO_REF:0000024
RGD
AgBase
PMID:17401695 GO_REF:0000024 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO
ISS
(PMID:17401695)
GO_REF:0000024
RGD
AgBase
PMID:17401695 GO_REF:0000024 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533
JBrowse link
G Tmem119 transmembrane protein 119 ISO
IBA
(PMID:20025746)
PMID:21873635
(MGI:MGI:4418582|PMID:20025746), (MGI:MGI:5700277|PMID:26207632)
RGD PMID:20025746, PMID:26207632, PMID:21873635 MGI:MGI:4418582, MGI:MGI:5700277, RGD:13792537 NCBI chr12:48,598,498...48,605,704
Ensembl chr12:48,598,647...48,605,704
JBrowse link
G Wnt10b Wnt family member 10B ISO (MGI:MGI:3574150|PMID:15728361) RGD PMID:15728361 MGI:MGI:3574150 NCBI chr 7:140,448,284...140,466,159
Ensembl chr 7:140,448,465...140,454,268
JBrowse link
G Wnt4 Wnt family member 4 ISO
IEA
(PMID:17720811)
GO_REF:0000107
RGD
Ensembl
PMID:17720811 GO_REF:0000107 NCBI chr 5:155,649,238...155,668,065
Ensembl chr 5:155,649,217...155,672,579
JBrowse link
positive regulation of bone mineralization involved in bone maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 ISO (MGI:MGI:5291888|PMID:21784188) RGD PMID:21784188 MGI:MGI:5291888 NCBI chr 1:220,120,532...220,136,460
Ensembl chr 1:220,120,533...220,136,470
JBrowse link
G Asxl2 ASXL transcriptional regulator 2 ISO MGI:MGI:3840841 (MGI:MGI:5514358|PMID:21490954) RGD PMID:21490954 MGI:MGI:5514358 NCBI chr 6:27,835,346...27,919,285
Ensembl chr 6:27,887,797...27,915,563
JBrowse link
positive regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amtn amelotin ISO
IBA
ISS
(MGI:MGI:5613837|PMID:25407797)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:25407797, PMID:21873635 GO_REF:0000024, MGI:MGI:5613837, RGD:13792537 NCBI chr14:21,282,488...21,301,966
Ensembl chr14:21,286,510...21,299,068
JBrowse link
G Dspp dentin sialophosphoprotein ISO (MGI:MGI:3603472|PMID:16014627) RGD PMID:16014627 MGI:MGI:3603472 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Enam enamelin ISO
IBA
MGI:MGI:3796583 (MGI:MGI:5647983|PMID:24603688)
PMID:21873635
RGD PMID:24603688, PMID:21873635 MGI:MGI:5647983, RGD:13792537 NCBI chr14:21,194,635...21,219,529
Ensembl chr14:21,194,664...21,219,454
JBrowse link
G Odaph odontogenesis associated phosphoprotein ISO
IBA
ISS
(PMID:22901946)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22901946, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:17,575,295...17,583,214
Ensembl chr14:17,575,758...17,582,823
JBrowse link
positive regulation of tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO
IEA
ISS
(PMID:19578371)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19578371 GO_REF:0000024, GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Wnt6 Wnt family member 6 ISO (PMID:20113781) RGD PMID:20113781 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166
JBrowse link
regulation of bone mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankh ANKH inorganic pyrophosphate transport regulator TAS
ISO
ISS
IEA
MGI:MGI:1856651 (MGI:MGI:1860991|PMID:10894769), (MGI:MGI:55055|PMID:7276519)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:7276519, PMID:10894769, PMID:12861042 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1860991, MGI:MGI:55055, RGD:634632 NCBI chr 2:80,131,563...80,256,948
Ensembl chr 2:80,131,563...80,256,954
JBrowse link
G Bglap bone gamma-carboxyglutamate protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:187,741,770...187,748,445
Ensembl chr 2:187,741,770...187,742,747
JBrowse link
G Bmp2k BMP-2 inducible kinase ISO
IBA
(MGI:MGI:2153232|PMID:11500515)
PMID:21873635
RGD PMID:11500515, PMID:21873635 MGI:MGI:2153232, RGD:13792537 NCBI chr14:14,126,086...14,226,823
Ensembl chr14:14,129,725...14,192,048
JBrowse link
G Comp cartilage oligomeric matrix protein ISO
IEA
(MGI:MGI:5318950|PMID:21350216)
GO_REF:0000107
RGD
Ensembl
PMID:21350216 GO_REF:0000107, MGI:MGI:5318950 NCBI chr16:20,798,437...20,807,070
Ensembl chr16:20,798,437...20,807,070
JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 ISO (PMID:9415400) RGD PMID:9415400 NCBI chr 7:70,333,150...70,340,006
Ensembl chr 7:70,335,061...70,340,005
JBrowse link
G Ddr2 discoidin domain receptor tyrosine kinase 2 ISO (PMID:20564243) RGD PMID:20564243 NCBI chr13:88,311,639...88,436,561
Ensembl chr13:88,317,145...88,436,789
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 TAS RGD PMID:8509401 RGD:728616 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link
G Ecm1 extracellular matrix protein 1 ISO
IBA
(MGI:MGI:4452294|PMID:20138147)
PMID:21873635
RGD PMID:20138147, PMID:21873635 MGI:MGI:4452294, RGD:13792537 NCBI chr 2:197,855,468...197,860,973
Ensembl chr 2:197,855,460...197,860,699
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Fgf23 fibroblast growth factor 23 ISO MGI:MGI:3512143 (MGI:MGI:3510566|PMID:15579309) RGD PMID:15579309 MGI:MGI:3510566 NCBI chr 4:159,622,404...159,630,082
Ensembl chr 4:159,622,404...159,630,082
JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:MGI:2445468|MGI:MGI:3776013 (MGI:MGI:5317265|PMID:21346198) RGD PMID:21346198 MGI:MGI:5317265 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
G LOC103690116 osteomodulin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:14,635,588...14,646,368
Ensembl chr17:14,635,184...14,637,832
Ensembl chr17:14,635,184...14,637,832
JBrowse link
G Matn1 matrilin 1 ISO MGI:MGI:2153042|MGI:MGI:3663272 (MGI:MGI:3655339|PMID:16877353) RGD PMID:16877353 MGI:MGI:3655339 NCBI chr 5:149,077,412...149,086,957
Ensembl chr 5:149,077,412...149,086,957
JBrowse link
G Mgp matrix Gla protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:170,856,783...170,860,105
Ensembl chr 4:170,856,751...170,860,225
JBrowse link
G Nbr1 NBR1, autophagy cargo receptor ISO
IEA
(MGI:MGI:4818844|PMID:20616007)
GO_REF:0000107
RGD
Ensembl
PMID:20616007 GO_REF:0000107, MGI:MGI:4818844 NCBI chr10:89,455,202...89,483,791
Ensembl chr10:89,459,650...89,484,080
JBrowse link
G Omd osteomodulin NAS
IEA
GO_REF:0000002 InterPro PMID:10607915 GO_REF:0000002, RGD:633418 NCBI chr17:15,476,100...15,484,324
Ensembl chr17:15,475,710...15,484,269
JBrowse link
G S1pr1 sphingosine-1-phosphate receptor 1 ISO
ISS
(MGI:MGI:3839226|PMID:19204730)
GO_REF:0000024
RGD
UniProt
PMID:19204730 GO_REF:0000024, MGI:MGI:3839226 NCBI chr 2:218,654,406...218,658,761
Ensembl chr 2:218,654,554...218,658,761
JBrowse link
G Sgms2 sphingomyelin synthase 2 ISS
ISO
IEA
GO_REF:0000024
(PMID:30779713)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30779713 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:236,458,276...236,530,667
Ensembl chr 2:236,458,279...236,480,502
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO MGI:MGI:1890508 (MGI:MGI:5913114|PMID:23695662) RGD PMID:23695662 MGI:MGI:5913114 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:19597909) RGD PMID:19597909 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214
JBrowse link
G Txlng taxilin gamma ISO (MGI:MGI:3587454|PMID:15911876), (MGI:MGI:5306578|PMID:19016261) RGD PMID:15911876, PMID:19016261 MGI:MGI:3587454, MGI:MGI:5306578 NCBI chr  X:33,599,643...33,648,525
Ensembl chr  X:33,599,671...33,646,444
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:1099440 (MGI:MGI:5913114|PMID:23695662) RGD PMID:23695662 MGI:MGI:5913114 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
regulation of enamel mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:4453947|PMID:20102707) RGD PMID:20102707 MGI:MGI:4453947 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 ISO
IEA
(MGI:MGI:3603472|PMID:16014627)
GO_REF:0000107
RGD
Ensembl
PMID:16014627 GO_REF:0000107, MGI:MGI:3603472 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link
tooth mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked ISO (PMID:1483698)
(MGI:MGI:2149207|PMID:11406633)
RGD PMID:1483698, PMID:11406633 MGI:MGI:2149207 NCBI chr  X:26,439,197...26,450,495
Ensembl chr  X:26,439,197...26,450,495
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:17118335) RGD PMID:17118335 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Tspear thrombospondin-type laminin G domain and EAR repeats ISO (PMID:27736875) RGD PMID:27736875 NCBI chr20:11,501,510...11,529,210
Ensembl chr20:11,501,925...11,528,332
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    biomineralization 173
      biomineral tissue development 171
        bone mineralization + 128
        chitin-based cuticle sclerotization by biomineralization 0
        negative regulation of biomineral tissue development + 29
        otolith mineralization + 3
        positive regulation of biomineral tissue development + 53
        regulation of biomineral tissue development + 100
        shell calcification + 0
        tooth mineralization + 27
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              biomineral tissue development 171
                bone mineralization + 128
                chitin-based cuticle sclerotization by biomineralization 0
                negative regulation of biomineral tissue development + 29
                otolith mineralization + 3
                positive regulation of biomineral tissue development + 53
                regulation of biomineral tissue development + 100
                shell calcification + 0
                tooth mineralization + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.