ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly
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Accession:GO:0031497 term browser browse the term
Definition:The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus.
Synonyms:exact_synonym: establishment of chromatin architecture


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chromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdan1 codanin 1 JBrowse link 3 112,660,839 112,676,596 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:1624291
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:1624291
G Gatad1 GATA zinc finger domain containing 1 JBrowse link 4 27,647,005 27,658,533 RGD:1624291
RGD:1600115
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Noc2l NOC2-like nucleolar associated transcriptional repressor JBrowse link 5 173,659,796 173,672,699 RGD:1624291
RGD:1600115
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
CENP-A containing nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpp centromere protein P JBrowse link 17 15,429,526 15,603,197 RGD:1600115
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:1624291
G Itgb3bp integrin subunit beta 3 binding protein JBrowse link 5 118,476,410 118,541,928 RGD:1600115
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Mis18a MIS18 kinetochore protein A JBrowse link 11 30,880,231 30,893,262 RGD:1624291
RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
RGD:1600115
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:1624291
RGD:1600115
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:1624291
RGD:1600115
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:1624291
RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h3a histone cluster 1 H3 family member A JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
RGD:1600115
G Hist1h4m histone cluster 1, H4m RGD:1600115
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
RGD:1600115
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
RGD:1600115
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Ipo4 importin 4 JBrowse link 15 34,304,425 34,314,552 RGD:1624291
RGD:1600115
G LOC100912489 histone H4-like JBrowse link 4 170,144,871 170,145,311 RGD:1600115
G LOC100912564 histone H4-like JBrowse link 4 170,182,634 170,183,074 RGD:1600115
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
RGD:13792537
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
RGD:1600115
DNA replication-independent nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
RGD:1600115
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
RGD:1600115
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Cabin1 calcineurin binding protein 1 JBrowse link 20 13,836,032 13,963,003 RGD:1600115
RGD:13792537
RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:1624291
RGD:1600115
G Hira histone cell cycle regulator JBrowse link 11 86,168,196 86,276,430 RGD:1624291
RGD:13792537
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
RGD:1600115
G Hist1h4m histone cluster 1, H4m RGD:1600115
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
RGD:1600115
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
RGD:1600115
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Ipo4 importin 4 JBrowse link 15 34,304,425 34,314,552 RGD:1624291
RGD:1600115
G LOC100911837 protein HIRA-like JBrowse link 11 85,802,536 85,896,680 RGD:13792537
G LOC100912489 histone H4-like JBrowse link 4 170,144,871 170,145,311 RGD:1600115
G LOC100912564 histone H4-like JBrowse link 4 170,182,634 170,183,074 RGD:1600115
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
RGD:1600115
G Ubn1 ubinuclein 1 JBrowse link 10 10,690,224 10,725,655 RGD:1624291
RGD:1600115
heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bahd1 bromo adjacent homology domain containing 1 JBrowse link 3 110,708,790 110,732,038 RGD:1624291
RGD:1600115
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
heterochromatin assembly involved in chromatin silencing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz2a bromodomain adjacent to zinc finger domain, 2A JBrowse link 7 2,518,267 2,548,840 RGD:1624291
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 9 119,675,750 119,818,620 RGD:1600115
RGD:1624291
nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anp32b acidic nuclear phosphoprotein 32 family member B JBrowse link 5 62,070,709 62,094,633 RGD:1600115
RGD:1624291
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
G Brd2 bromodomain containing 2 JBrowse link 20 3,910,555 3,921,074 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:13792537
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:13792537
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:1624291
RGD:13792537
RGD:1600115
G Grwd1 glutamate-rich WD repeat containing 1 JBrowse link 1 101,813,356 101,819,058 RGD:1600115
RGD:1624291
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1foo H1 histone family, member O, oocyte-specific JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H1fx H1 histone family, member X JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G H2afy H2A histone family, member Y JBrowse link 17 9,282,109 9,344,698 RGD:1600115
G H2afy2 H2A histone family, member Y2 JBrowse link 20 31,352,924 31,402,483 RGD:1600115
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1600115
G Hist1h1a histone cluster 1 H1 family member a JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G Hist1h1b histone cluster 1 H1 family member b JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G Hist1h1c histone cluster 1 H1 family member c JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G Hist1h1d histone cluster 1 H1 family member d JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hist1h1e histone cluster 1 H1 family member e JBrowse link 17 43,734,461 43,735,120 RGD:1600115
G Hist1h1t histone cluster 1 H1 family member t JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:13792537
G Hist1h2ba histone cluster 1 H2B family member a JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:13792537
RGD:1600115
G Hist1h2bc histone cluster 1, H2bc JBrowse link 17 44,736,184 44,738,393 RGD:13792537
G Hist1h2bd histone cluster 1 H2B family member D JBrowse link 17 44,833,924 44,834,305 RGD:13792537
G Hist1h2bg histone cluster 1, H2bg JBrowse link 17 43,817,316 43,817,717 RGD:13792537
G Hist1h2bh histone cluster 1 H2B family member h JBrowse link 17 44,519,815 44,520,269 RGD:13792537
G Hist1h2bk histone cluster 1 H2B family member k JBrowse link 17 44,527,421 44,527,801 RGD:13792537
G Hist1h2bl histone cluster 1 H2B family member l JBrowse link 17 44,748,445 44,748,910 RGD:13792537
G Hist1h2bo histone cluster 1 H2B family member o JBrowse link 17 44,756,557 44,758,170 RGD:13792537
G Hist1h2bq histone cluster 1 H2B family member Q JBrowse link 17 43,679,925 43,689,311 RGD:13792537
G Hist1h3a histone cluster 1 H3 family member A JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
RGD:13792537
G Hist1h4m histone cluster 1, H4m RGD:13792537
G Hist2h2be histone cluster 2 H2B family member E JBrowse link 2 198,360,837 198,363,399 RGD:13792537
G Hist2h3c2 histone cluster 2 H3 family member C2 JBrowse link 2 198,390,024 198,418,075 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
RGD:13792537
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:13792537
RGD:1624291
G Hist3h2ba histone cluster 3, H2ba JBrowse link 10 45,289,741 45,290,370 RGD:13792537
G Hist3h2bb histone cluster 3 H2B family member b JBrowse link 10 45,296,638 45,297,385 RGD:13792537
G Hist3h3 histone cluster 3, H3 JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Hmgb2 high mobility group box 2 JBrowse link 16 36,077,615 36,080,191 RGD:1624291
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G LOC100364835 histone cluster 1, H2bd-like JBrowse link 17 43,764,654 43,765,101 RGD:13792537
G LOC100365043 histone cluster 1, H2bd-like JBrowse link 17 43,808,617 43,817,817 RGD:13792537
G LOC100910200 histone H2B type 1-C/E/G-like JBrowse link 17 44,792,982 44,793,896 RGD:13792537
G LOC100912489 histone H4-like JBrowse link 4 170,144,871 170,145,311 RGD:13792537
G LOC100912564 histone H4-like JBrowse link 4 170,182,634 170,183,074 RGD:13792537
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102549061 histone H2B type 1-N-like JBrowse link 17 43,627,872 43,628,518 RGD:13792537
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC108348112 bromodomain-containing protein 2 JBrowse link 20 5,262,742 5,269,337 RGD:1600115
G LOC684444 similar to HIStone family member (his-41) JBrowse link 2 29,247,748 29,248,259 RGD:13792537
G LOC684762 similar to CG31613-PA JBrowse link 17 43,776,018 43,776,779 RGD:1624291
G LOC684797 similar to Histone H2B 291B JBrowse link 17 43,778,481 43,778,990 RGD:13792537
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:1624291
RGD:1600115
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit JBrowse link 10 11,881,635 11,902,139 RGD:1624291
RGD:1600115
G Nap1l1 nucleosome assembly protein 1-like 1 JBrowse link 7 54,213,305 54,237,880 RGD:1600115
G Nap1l3 nucleosome assembly protein 1-like 3 JBrowse link X 95,059,334 95,062,132 RGD:1600115
G Nap1l4 nucleosome assembly protein 1-like 4 JBrowse link 1 216,715,352 216,751,742 RGD:1600115
RGD:1624291
G Nap1l5 nucleosome assembly protein 1-like 5 JBrowse link 4 89,149,314 89,152,511 RGD:1600115
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Padi4 peptidyl arginine deiminase 4 JBrowse link 5 159,260,675 159,293,906 RGD:1624291
RGD:1600115
G Pkn3 protein kinase N3 JBrowse link 3 8,628,033 8,656,464 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
RGD:13792537
G RGD1563307 similar to Set beta isoform JBrowse link 1 89,645,570 89,646,774 RGD:1600115
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
RGD:1600115
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Set SET nuclear proto-oncogene JBrowse link 19 58,420,635 58,422,153 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
G Smyd3 SET and MYND domain containing 3 JBrowse link 13 97,330,120 97,807,813 RGD:1624291
G Sox9 SRY box 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
G Tspy1 testis specific protein, Y-linked 1 JBrowse link Y 151,941 156,587 RGD:1600115
G Tspy26 testis specific protein, Y-linked 26 JBrowse link 3 148,704,896 148,706,972 RGD:1600115
G Tspyl1 TSPY-like 1 JBrowse link 20 41,083,317 41,085,876 RGD:1600115
G Tspyl2 TSPY-like 2 JBrowse link X 22,408,118 22,413,886 RGD:1600115
G Tspyl4 TSPY-like 4 JBrowse link 20 41,100,071 41,102,067 RGD:1600115
G Tspyl5 TSPY-like 5 JBrowse link 7 72,323,764 72,328,228 RGD:1600115
nucleosome positioning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcf CCCTC-binding factor JBrowse link 19 37,600,151 37,649,674 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1fnt H1 histone family, member N, testis-specific JBrowse link 7 139,871,491 139,872,858 RGD:13792537
G H1foo H1 histone family, member O, oocyte-specific JBrowse link 4 147,844,658 147,849,779 RGD:1624291
RGD:13792537
RGD:1600115
G H1fx H1 histone family, member X JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
G Hist1h1a histone cluster 1 H1 family member a JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G Hist1h1b histone cluster 1 H1 family member b JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G Hist1h1c histone cluster 1 H1 family member c JBrowse link 17 43,638,938 43,640,445 RGD:1624291
RGD:13792537
G Hist1h1d histone cluster 1 H1 family member d JBrowse link 17 43,797,711 43,798,450 RGD:1624291
RGD:13792537
G Hist1h1e histone cluster 1 H1 family member e JBrowse link 17 43,734,461 43,735,120 RGD:1624291
RGD:13792537
G Hist1h1t histone cluster 1 H1 family member t JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
RGD:1600115
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:1624291
RGD:1600115
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
RGD:1600115
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:13792537
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
RGD:13792537
pericentric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpv centromere protein V JBrowse link 10 48,846,513 48,861,893 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
G Hells helicase, lymphoid specific JBrowse link 1 257,901,856 257,953,889 RGD:1624291
positive regulation of heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
positive regulation of telomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:1624291
RGD:1600115
regulation of chromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parp10 poly (ADP-ribose) polymerase family, member 10 JBrowse link 7 117,291,592 117,300,878 RGD:1624291
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1624291
G Hmga1 high mobility group AT-hook 1 JBrowse link 20 7,132,501 7,140,155 RGD:1624291
RGD:1600115
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
telomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17926
    cellular component organization or biogenesis 6227
      cellular component organization 6054
        cellular component assembly 2928
          chromatin assembly 123
            heterochromatin assembly + 14
            nucleosome assembly + 103
            nucleosome positioning 17
            regulation of chromatin assembly + 4
Path 2
Term Annotations click to browse term
  biological_process 17926
    cellular process 16077
      cellular component organization 6054
        organelle organization 3647
          chromosome organization 1129
            DNA conformation change 235
              DNA packaging 165
                chromatin assembly 123
                  heterochromatin assembly + 14
                  nucleosome assembly + 103
                  nucleosome positioning 17
                  regulation of chromatin assembly + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.