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ONTOLOGY REPORT - ANNOTATIONS


Term:heterochromatin assembly
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Accession:GO:0031507 term browser browse the term
Definition:The assembly of chromatin into heterochromatin, a compact and highly condensed form that is often, but not always, transcriptionally silent.
Synonyms:exact_synonym: establishment of heterochromatin architecture;   heterochromatin formation
 narrow_synonym: establishment of heterochromatin architecture involved in chromatin silencing at centromere outer repeat region;   establishment of heterochromatin architecture involved in chromatin silencing at pericentric region;   heterochromatin assembly involved in chromatin silencing at centromere outer repeat region;   heterochromatin assembly involved in chromatin silencing at pericentric region;   heterochromatin formation involved in chromatin silencing at centromere outer repeat region;   heterochromatin formation involved in chromatin silencing at pericentric region
 related_synonym: establishment of chromatin silencing;   establishment of heterochromatic silencing;   heterochromatin assembly involved in chromatin silencing;   heterochromatin formation involved in chromatin silencing
 alt_id: GO:0006343;   GO:0070869;   GO:1904497


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heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAHD1 bromo adjacent homology domain containing 1 JBrowse link 15 40,439,757 40,468,237 RGD:2290271
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 12 56,595,596 56,636,816 RGD:9068941
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link 17 42,700,275 42,745,078 RGD:2290271
G HMGA2 high mobility group AT-hook 2 JBrowse link 12 65,824,460 65,966,291 RGD:2290271
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 9 113,407,235 113,410,749 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNMT3A DNA methyltransferase 3 alpha JBrowse link 2 25,227,874 25,342,590 RGD:2290271
G DNMT3B DNA methyltransferase 3 beta JBrowse link 20 32,762,385 32,809,356 RGD:9068941
G HDAC1 histone deacetylase 1 JBrowse link 1 32,292,083 32,333,628 RGD:2290271
G HELLS helicase, lymphoid specific JBrowse link 10 94,545,767 94,613,905 RGD:2290271
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 18 54,151,606 54,224,669 RGD:2290271
G MBD3 methyl-CpG binding domain protein 3 JBrowse link 19 1,573,596 1,592,865 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 19 10,960,997 11,062,277 RGD:9068941
heterochromatin assembly by small RNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FAM172A family with sequence similarity 172 member A JBrowse link 5 93,615,130 94,111,699 RGD:2290271
G FAM172BP family with sequence similarity 172 member B, pseudogene JBrowse link 3 101,518,867 101,523,887 RGD:2290271
G NRDE2 NRDE-2, necessary for RNA interference, domain containing JBrowse link 14 90,267,860 90,331,969 RGD:2290271
G ZNFX1 zinc finger NFX1-type containing 1 JBrowse link 20 49,245,900 49,278,057 RGD:2290271
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 18 2,655,726 2,805,017 RGD:2290271
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AICDA activation induced cytidine deaminase JBrowse link 12 8,602,170 8,612,970 RGD:2290271
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 12 7,649,400 7,670,599 RGD:2290271
G TET1 tet methylcytosine dioxygenase 1 JBrowse link 10 68,560,337 68,700,794 RGD:2290271
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PHF2 PHD finger protein 2 JBrowse link 9 93,576,584 93,679,587 RGD:2290271
G PHF8 PHD finger protein 8 JBrowse link X 53,936,680 54,048,935 RGD:2290271
pericentric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CENPV centromere protein V JBrowse link 17 16,342,537 16,353,469 RGD:2290271
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,086,228 95,158,263 RGD:9068941
G H3-3A H3.3 histone A JBrowse link 1 226,061,831 226,072,019 RGD:2290271
G H3-3B H3.3 histone B JBrowse link 17 75,776,434 75,779,779 RGD:2290271
G HELLS helicase, lymphoid specific JBrowse link 10 94,545,767 94,613,905 RGD:2290271
G ZNFX1 zinc finger NFX1-type containing 1 JBrowse link 20 49,245,900 49,278,057 RGD:2290271
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATF7IP activating transcription factor 7 interacting protein JBrowse link 12 14,365,632 14,502,935 RGD:2290271
G DNMT1 DNA methyltransferase 1 JBrowse link 19 10,133,346 10,194,953 RGD:2290271
G MORC2 MORC family CW-type zinc finger 2 JBrowse link 22 30,925,130 30,968,774 RGD:2290271
G MPHOSPH8 M-phase phosphoprotein 8 JBrowse link 13 19,633,648 19,673,441 RGD:2290271
G PPHLN1 periphilin 1 JBrowse link 12 42,326,126 42,448,621 RGD:2290271
G RESF1 retroelement silencing factor 1 JBrowse link 12 31,959,415 31,993,107 RGD:2290271
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 1 150,926,263 150,964,737 RGD:2290271
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 13 49,444,274 49,495,003 RGD:2290271
G TASOR transcription activation suppressor JBrowse link 3 56,620,132 56,683,265 RGD:2290271
G TRIM28 tripartite motif containing 28 JBrowse link 19 58,544,064 58,550,722 RGD:2290271
G ZNF304 zinc finger protein 304 JBrowse link 19 57,351,253 57,359,898 RGD:2290271
positive regulation of heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TPR translocated promoter region, nuclear basket protein JBrowse link 1 186,311,652 186,375,253 RGD:2290271
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIRT6 sirtuin 6 JBrowse link 19 4,174,109 4,182,563 RGD:2290271
rDNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 12 56,595,596 56,636,816 RGD:2290271
G BEND3 BEN domain containing 3 JBrowse link 6 107,065,181 107,115,515 RGD:2290271
G H3-3A H3.3 histone A JBrowse link 1 226,061,831 226,072,019 RGD:2290271
G H3-3B H3.3 histone B JBrowse link 17 75,776,434 75,779,779 RGD:2290271
G H3C1 H3 clustered histone 1 JBrowse link 6 26,020,451 26,020,958 RGD:2290271
G H3C10 H3 clustered histone 10 JBrowse link 6 27,810,051 27,810,536 RGD:2290271
G H3C11 H3 clustered histone 11 JBrowse link 6 27,871,845 27,872,346 RGD:2290271
G H3C12 H3 clustered histone 12 JBrowse link 6 27,890,315 27,890,826 RGD:2290271
G H3C13 H3 clustered histone 13 JBrowse link 1 149,813,225 149,813,693 RGD:2290271
G H3C14 H3 clustered histone 14 JBrowse link 1 149,840,687 149,841,208 RGD:2290271
G H3C15 H3 clustered histone 15 JBrowse link 1 149,852,608 149,853,125 RGD:2290271
G H3C2 H3 clustered histone 2 JBrowse link 6 26,031,589 26,032,099 RGD:2290271
G H3C3 H3 clustered histone 3 JBrowse link 6 26,045,384 26,045,869 RGD:2290271
G H3C4 H3 clustered histone 4 JBrowse link 6 26,196,784 26,199,293 RGD:2290271
G H3C6 H3 clustered histone 6 JBrowse link 6 26,224,178 26,227,473 RGD:2290271
G H3C7 H3 clustered histone 7 JBrowse link 6 26,250,142 26,250,635 RGD:2290271
G H3C8 H3 clustered histone 8 JBrowse link 6 26,270,918 26,271,413 RGD:2290271
G H4-16 H4 histone 16 JBrowse link 12 14,770,720 14,771,131 RGD:2290271
G H4C1 H4 clustered histone 1 JBrowse link 6 26,021,649 26,022,050 RGD:2290271
G H4C11 H4 clustered histone 11 JBrowse link 6 27,824,092 27,824,480 RGD:2290271
G H4C12 H4 clustered histone 12 JBrowse link 6 27,831,174 27,831,560 RGD:2290271
G H4C13 H4 clustered histone 13 JBrowse link 6 27,873,148 27,873,534 RGD:2290271
G H4C14 H4 clustered histone 14 JBrowse link 1 149,832,657 149,833,052 RGD:2290271
G H4C15 H4 clustered histone 15 JBrowse link 1 149,853,262 149,861,159 RGD:2290271
G H4C2 H4 clustered histone 2 JBrowse link 6 26,026,896 26,027,283 RGD:2290271
G H4C3 H4 clustered histone 3 JBrowse link 6 26,103,933 26,104,337 RGD:2290271
G H4C4 H4 clustered histone 4 JBrowse link 6 26,188,710 26,189,112 RGD:2290271
G H4C5 H4 clustered histone 5 JBrowse link 6 26,204,610 26,205,021 RGD:2290271
G H4C6 H4 clustered histone 6 JBrowse link 6 26,240,393 26,240,793 RGD:2290271
G H4C8 H4 clustered histone 8 JBrowse link 6 26,285,126 26,285,534 RGD:2290271
G H4C9 H4 clustered histone 9 JBrowse link 6 27,139,282 27,139,678 RGD:2290271
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 18 54,151,606 54,224,669 RGD:2290271
G RRP8 ribosomal RNA processing 8 JBrowse link 11 6,514,830 6,603,678 RGD:2290271
G SIRT1 sirtuin 1 JBrowse link 10 67,884,656 67,918,390 RGD:2290271
G SIRT2 sirtuin 2 JBrowse link 19 38,878,555 38,899,862 RGD:2290271
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 4 143,513,501 143,557,486 RGD:2290271
G SUV39H1 suppressor of variegation 3-9 homolog 1 JBrowse link X 48,695,554 48,709,016 RGD:2290271
G UBTF upstream binding transcription factor JBrowse link 17 44,205,036 44,221,304 RGD:9068941
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POU5F1 POU class 5 homeobox 1 JBrowse link 6 31,164,337 31,170,682 RGD:2290271
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MACROH2A1 macroH2A.1 histone JBrowse link 5 135,334,381 135,401,998 RGD:2290271
G NAA40 N-alpha-acetyltransferase 40, NatD catalytic subunit JBrowse link 11 63,938,973 63,957,322 RGD:2290271
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDKN2A cyclin dependent kinase inhibitor 2A JBrowse link 9 21,967,752 21,995,324 RGD:2290271
G HMGA1 high mobility group AT-hook 1 JBrowse link 6 34,236,873 34,246,231 RGD:2290271
G HMGA2 high mobility group AT-hook 2 JBrowse link 12 65,824,460 65,966,291 RGD:2290271
subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3-3A H3.3 histone A JBrowse link 1 226,061,831 226,072,019 RGD:2290271
G H3-3B H3.3 histone B JBrowse link 17 75,776,434 75,779,779 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18539
    cellular process 17550
      cellular component organization or biogenesis 7084
        cellular component organization 6893
          chromatin organization 872
            chromatin remodeling 235
              heterochromatin assembly 78
                DNA methylation-dependent heterochromatin assembly + 23
                heterochromatin assembly by small RNA + 4
                heterochromatin domain assembly + 0
                heterochromatin island assembly + 0
                inactivation of X chromosome by heterochromatin assembly 1
                negative regulation of heterochromatin assembly + 5
                pericentric heterochromatin assembly + 6
                positive regulation of heterochromatin assembly + 13
                rDNA heterochromatin assembly + 42
                regulation of heterochromatin assembly + 21
                senescence-associated heterochromatin focus assembly 3
                silent mating-type cassette heterochromatin assembly + 0
                subtelomeric heterochromatin assembly + 3
Path 2
Term Annotations click to browse term
  biological_process 18539
    metabolic process 12198
      cellular metabolic process 11191
        cellular aromatic compound metabolic process 6143
          nucleobase-containing compound metabolic process 5895
            nucleic acid metabolic process 5350
              RNA metabolic process 4826
                regulation of RNA metabolic process 3939
                  negative regulation of RNA metabolic process 1521
                    negative regulation of RNA biosynthetic process 1413
                      negative regulation of nucleic acid-templated transcription 1411
                        negative regulation of transcription, DNA-templated 1367
                          chromatin organization involved in negative regulation of transcription 154
                            heterochromatin assembly 78
                              DNA methylation-dependent heterochromatin assembly + 23
                              heterochromatin assembly by small RNA + 4
                              heterochromatin domain assembly + 0
                              heterochromatin island assembly + 0
                              inactivation of X chromosome by heterochromatin assembly 1
                              negative regulation of heterochromatin assembly + 5
                              pericentric heterochromatin assembly + 6
                              positive regulation of heterochromatin assembly + 13
                              rDNA heterochromatin assembly + 42
                              regulation of heterochromatin assembly + 21
                              senescence-associated heterochromatin focus assembly 3
                              silent mating-type cassette heterochromatin assembly + 0
                              subtelomeric heterochromatin assembly + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.