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ONTOLOGY REPORT - ANNOTATIONS


Term:heterochromatin assembly
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Accession:GO:0031507 term browser browse the term
Definition:The assembly of chromatin into heterochromatin, a compact and highly condensed form that is often, but not always, transcriptionally silent.
Synonyms:exact_synonym: establishment of heterochromatin architecture;   heterochromatin formation
 narrow_synonym: establishment of heterochromatin architecture involved in chromatin silencing at centromere outer repeat region;   establishment of heterochromatin architecture involved in chromatin silencing at pericentric region;   heterochromatin assembly involved in chromatin silencing at centromere outer repeat region;   heterochromatin assembly involved in chromatin silencing at pericentric region;   heterochromatin formation involved in chromatin silencing at centromere outer repeat region;   heterochromatin formation involved in chromatin silencing at pericentric region
 related_synonym: establishment of chromatin silencing;   establishment of heterochromatic silencing;   heterochromatin assembly involved in chromatin silencing;   heterochromatin formation involved in chromatin silencing
 alt_id: GO:0006343;   GO:0070869;   GO:1904497


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heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bahd1 bromo adjacent homology domain containing 1 JBrowse link NW_004936471 3,902,558 3,927,746 RGD:9068941
G Baz2a bromodomain adjacent to zinc finger domain 2A JBrowse link NW_004936646 914,944 949,057 RGD:9068941
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link NW_004936490 17,430,383 17,465,889 RGD:9068941
G Hmga2 high mobility group AT-hook 2 JBrowse link NW_004936545 3,944,419 3,958,289 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004936521 10,296,097 10,316,673 RGD:9068941
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link NW_004936493 6,963,406 7,013,256 RGD:9068941
G Dnmt3b DNA methyltransferase 3 beta JBrowse link NW_004936485 19,547,836 19,570,716 RGD:9068941
G Hdac1 histone deacetylase 1 JBrowse link NW_004936474 15,320,635 15,351,418 RGD:9068941
G Hells helicase, lymphoid specific JBrowse link NW_004936601 626,354 662,477 RGD:9068941
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link NW_004936497 9,512,350 9,619,250 RGD:9068941
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link NW_004936588 865,046 873,821 RGD:9068941
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link NW_004936659 1,152,846 1,246,718 RGD:9068941
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link NW_004936672 1,686,070 1,838,315 RGD:9068941
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation induced cytidine deaminase JBrowse link NW_004936870 25,039 34,601 RGD:9068941
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link NW_004936521 9,646,581 9,765,244 RGD:9068941
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phf2 PHD finger protein 2 JBrowse link NW_004936487 2,912,114 2,956,429 RGD:9068941
G Phf8 PHD finger protein 8 JBrowse link NW_004936751 850,630 935,382 RGD:9068941
pericentric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpv centromere protein V JBrowse link NW_004936821 267,137 276,969 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Hells helicase, lymphoid specific JBrowse link NW_004936601 626,354 662,477 RGD:9068941
G LOC101963041 histone H3.3 JBrowse link NW_004936526 2,835,002 2,842,328 RGD:9068941
G LOC101963257 histone H3.3 JBrowse link NW_004936594 959,493 961,703 RGD:9068941
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf7ip activating transcription factor 7 interacting protein JBrowse link NW_004936587 2,922,855 3,026,773 RGD:9068941
G Dnmt1 DNA methyltransferase 1 JBrowse link NW_004936659 520,181 565,496 RGD:9068941
G Morc2 MORC family CW-type zinc finger 2 JBrowse link NW_004936755 133,315 171,507 RGD:9068941
G Mphosph8 M-phase phosphoprotein 8 JBrowse link NW_004936720 1,972,063 2,025,283 RGD:9068941
G Pphln1 periphilin 1 JBrowse link NW_004936512 1,001,733 1,158,647 RGD:9068941
G Resf1 retroelement silencing factor 1 JBrowse link NW_004936607 4,247,824 4,274,410 RGD:9068941
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link NW_004936580 1,146,286 1,192,842 RGD:9068941
G Tasor transcription activation suppressor JBrowse link NW_004936473 7,053,797 7,098,608 RGD:9068941
G Trim28 tripartite motif containing 28 JBrowse link NW_004937062 126,832 132,938 RGD:9068941
G Znf304 zinc finger protein 304 JBrowse link NW_004936897 244,051 253,580 RGD:9068941
positive regulation of heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpr translocated promoter region, nuclear basket protein JBrowse link NW_004936481 4,050,693 4,111,682 RGD:9068941
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt6 sirtuin 6 JBrowse link NW_004936588 2,387,162 2,394,066 RGD:9068941
rDNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz2a bromodomain adjacent to zinc finger domain 2A JBrowse link NW_004936646 914,944 949,057 RGD:9068941
G Bend3 BEN domain containing 3 JBrowse link NW_004936564 3,495,020 3,513,684 RGD:9068941
G Rrp8 ribosomal RNA processing 8 JBrowse link NW_004936842 656,508 661,894 RGD:9068941
G Sirt1 sirtuin 1 JBrowse link NW_004936521 10,296,097 10,316,673 RGD:9068941
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link NW_004936535 4,857,816 4,890,266 RGD:9068941
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link NW_004936721 646,778 661,144 RGD:9068941
G Ubtf upstream binding transcription factor JBrowse link NW_004936541 671,178 687,485 RGD:9068941
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pou5f1 POU class 5 homeobox 1 JBrowse link NW_004936837 827,568 838,933 RGD:9068941
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101971629 core histone macro-H2A.1 JBrowse link NW_004936597 2,496,489 2,556,352 RGD:9068941
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmga1 high mobility group AT-hook 1 JBrowse link NW_004936476 24,795,854 24,803,138 RGD:9068941
G Hmga2 high mobility group AT-hook 2 JBrowse link NW_004936545 3,944,419 3,958,289 RGD:9068941
subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101963041 histone H3.3 JBrowse link NW_004936526 2,835,002 2,842,328 RGD:9068941
G LOC101963257 histone H3.3 JBrowse link NW_004936594 959,493 961,703 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11930
    cellular process 11112
      cellular component organization or biogenesis 4869
        cellular component organization 4791
          chromatin organization 542
            chromatin remodeling 117
              heterochromatin assembly 41
                DNA methylation-dependent heterochromatin assembly + 20
                heterochromatin assembly by small RNA + 0
                heterochromatin domain assembly + 0
                heterochromatin island assembly + 0
                inactivation of X chromosome by heterochromatin assembly 1
                negative regulation of heterochromatin assembly + 4
                pericentric heterochromatin assembly + 5
                positive regulation of heterochromatin assembly + 12
                rDNA heterochromatin assembly + 10
                regulation of heterochromatin assembly + 18
                senescence-associated heterochromatin focus assembly 2
                silent mating-type cassette heterochromatin assembly + 0
                subtelomeric heterochromatin assembly + 3
Path 2
Term Annotations click to browse term
  biological_process 11930
    metabolic process 7629
      cellular metabolic process 7037
        cellular aromatic compound metabolic process 3731
          nucleobase-containing compound metabolic process 3564
            nucleic acid metabolic process 3279
              RNA metabolic process 2909
                regulation of RNA metabolic process 2495
                  negative regulation of RNA metabolic process 1155
                    negative regulation of RNA biosynthetic process 1065
                      negative regulation of nucleic acid-templated transcription 1063
                        negative regulation of transcription, DNA-templated 1059
                          chromatin organization involved in negative regulation of transcription 59
                            heterochromatin assembly 41
                              DNA methylation-dependent heterochromatin assembly + 20
                              heterochromatin assembly by small RNA + 0
                              heterochromatin domain assembly + 0
                              heterochromatin island assembly + 0
                              inactivation of X chromosome by heterochromatin assembly 1
                              negative regulation of heterochromatin assembly + 4
                              pericentric heterochromatin assembly + 5
                              positive regulation of heterochromatin assembly + 12
                              rDNA heterochromatin assembly + 10
                              regulation of heterochromatin assembly + 18
                              senescence-associated heterochromatin focus assembly 2
                              silent mating-type cassette heterochromatin assembly + 0
                              subtelomeric heterochromatin assembly + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.