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ONTOLOGY REPORT - ANNOTATIONS


Term:telomere organization
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Accession:GO:0032200 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
Synonyms:exact_synonym: chromosome organization, telomeric;   organization of chromosome, telomeric region;   telomere organisation
 related_synonym: telomere organization and biogenesis


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telomere organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rad51 RAD51 recombinase JBrowse link NW_004936471 4,119,020 4,136,811 RGD:9068941
mitotic telomere maintenance via semi-conservative replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dna2 DNA replication helicase/nuclease 2 JBrowse link NW_004936521 9,843,867 9,884,248 RGD:9068941
G Pcna proliferating cell nuclear antigen JBrowse link NW_004936485 13,766,221 13,771,215 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
negative regulation of protection from non-homologous end joining at telomere term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link NW_004936706 1,854,938 1,867,521 RGD:9068941
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Xrcc1 X-ray repair cross complementing 1 JBrowse link NW_004936706 752,571 783,746 RGD:9068941
G Xrcc4 X-ray repair cross complementing 4 JBrowse link NW_004936469 2,248,367 2,495,215 RGD:9068941
negative regulation of t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Xrcc5 X-ray repair cross complementing 5 JBrowse link NW_004936586 1,055,478 1,137,924 RGD:9068941
negative regulation of telomere capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link NW_004936551 359,134 534,672 RGD:9068941
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Rad50 RAD50 double strand break repair protein JBrowse link NW_004936647 2,546,100 2,637,524 RGD:9068941
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link NW_004936538 8,126,307 8,361,920 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
negative regulation of telomere maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link NW_004936706 1,854,938 1,867,521 RGD:9068941
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link NW_004936722 320,171 323,703 RGD:9068941
negative regulation of telomere maintenance in response to DNA damage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
negative regulation of telomere maintenance via recombination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
negative regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Ctc1 CST telomere replication complex component 1 JBrowse link NW_004936595 1,456,911 1,476,331 RGD:9068941
G Dcp2 decapping mRNA 2 JBrowse link NW_004936597 4,884,458 4,918,041 RGD:9068941
G Exosc10 exosome component 10 JBrowse link NW_004936474 130,735 153,608 RGD:9068941
G Gnl3l G protein nucleolar 3 like JBrowse link NW_004936751 1,423,822 1,457,257 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004936512 11,481,017 11,487,737 RGD:9068941
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link NW_004936880 368,041 425,967 RGD:9068941
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link NW_004936526 6,014,745 6,022,213 RGD:9068941
G Nat10 N-acetyltransferase 10 JBrowse link NW_004936533 3,870,795 3,911,498 RGD:9068941
G Pif1 PIF1 5'-to-3' DNA helicase JBrowse link NW_004936471 25,165,850 25,173,503 RGD:9068941
G Pinx1 PIN2 (TERF1) interacting telomerase inhibitor 1 JBrowse link NW_004936675 2,641,851 2,706,201 RGD:9068941
G Pml PML nuclear body scaffold JBrowse link NW_004936471 33,135,186 33,173,218 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link NW_004936561 3,826,802 3,844,406 RGD:9068941
G Stn1 STN1 subunit of CST complex JBrowse link NW_004936600 2,230,754 2,266,956 RGD:9068941
G Ten1 TEN1 subunit of CST complex JBrowse link NW_004936594 1,139,926 1,159,611 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004936475 3,266,763 3,328,209 RGD:9068941
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link NW_004936722 320,171 323,703 RGD:9068941
negative regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Mcrs1 microspherule protein 1 JBrowse link NW_004936512 7,277,739 7,287,389 RGD:9068941
G Parp1 poly(ADP-ribose) polymerase 1 JBrowse link NW_004936526 3,102,468 3,147,601 RGD:9068941
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit JBrowse link NW_004936501 12,332,135 12,335,081 RGD:9068941
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link NW_004936694 720,585 744,477 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Tnks tankyrase JBrowse link NW_004936573 788,909 993,453 RGD:9068941
G Tnks2 tankyrase 2 JBrowse link NW_004936601 2,776,338 2,837,703 RGD:9068941
negative regulation of telomeric D-loop disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
positive regulation of shelterin complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt6 sirtuin 6 JBrowse link NW_004936588 2,387,162 2,394,066 RGD:9068941
positive regulation of t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link NW_004936706 1,854,938 1,867,521 RGD:9068941
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit JBrowse link NW_004936501 12,332,135 12,335,081 RGD:9068941
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link NW_004936694 720,585 744,477 RGD:9068941
positive regulation of telomere capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aurkb aurora kinase B JBrowse link NW_004936595 1,435,601 1,437,423 RGD:9068941
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link NW_004936738 2,096,370 2,115,135 RGD:9068941
G Map2k7 mitogen-activated protein kinase kinase 7 JBrowse link NW_004936588 4,882,191 4,891,807 RGD:9068941
G Map3k4 mitogen-activated protein kinase kinase kinase 4 JBrowse link NW_004936489 11,908,083 11,972,186 RGD:9068941
G Mapk1 mitogen-activated protein kinase 1 JBrowse link NW_004936619 1,889,841 1,932,646 RGD:9068941
G Mapk15 mitogen-activated protein kinase 15 JBrowse link NW_004936470 8,420,850 8,425,996 RGD:9068941
G Mapk3 mitogen-activated protein kinase 3 JBrowse link NW_004936501 12,342,670 12,390,650 RGD:9068941
G Mapkapk5 MAPK activated protein kinase 5 JBrowse link NW_004936558 4,414,283 4,448,291 RGD:9068941
G Nabp2 nucleic acid binding protein 2 JBrowse link NW_004936646 632,390 638,900 RGD:9068941
G Nek2 NIMA related kinase 2 JBrowse link NW_004936557 1,683,027 1,695,410 RGD:9068941
G Nek7 NIMA related kinase 7 JBrowse link NW_004936567 5,685,619 5,815,094 RGD:9068941
G Pkib cAMP-dependent protein kinase inhibitor beta JBrowse link NW_004936802 1,130,341 1,236,715 RGD:9068941
G Pnkp polynucleotide kinase 3'-phosphatase JBrowse link NW_004936664 3,649,020 3,656,545 RGD:9068941
G Prkcq protein kinase C theta JBrowse link NW_004936484 8,048,239 8,166,058 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
G Tnks tankyrase JBrowse link NW_004936573 788,909 993,453 RGD:9068941
G Tnks2 tankyrase 2 JBrowse link NW_004936601 2,776,338 2,837,703 RGD:9068941
positive regulation of telomere maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atrx ATRX chromatin remodeler JBrowse link NW_004936683 2,496,307 2,718,539 RGD:9068941
G Dhx36 DEAH-box helicase 36 JBrowse link NW_004936519 1,946,684 1,987,036 RGD:9068941
G Gnl3 G protein nucleolar 3 JBrowse link NW_004936473 3,476,436 3,483,868 RGD:9068941
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link NW_004936674 466,495 528,072 RGD:9068941
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Pml PML nuclear body scaffold JBrowse link NW_004936471 33,135,186 33,173,218 RGD:9068941
G Ppp1r10 protein phosphatase 1 regulatory subunit 10 JBrowse link NW_004936837 276,423 296,600 RGD:9068941
G Rad50 RAD50 double strand break repair protein JBrowse link NW_004936647 2,546,100 2,637,524 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
G Sirt6 sirtuin 6 JBrowse link NW_004936588 2,387,162 2,394,066 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
positive regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Atm ATM serine/threonine kinase JBrowse link NW_004936551 359,134 534,672 RGD:9068941
G Atr ATR serine/threonine kinase JBrowse link NW_004936540 4,074,543 4,178,859 RGD:9068941
G Aurkb aurora kinase B JBrowse link NW_004936595 1,435,601 1,437,423 RGD:9068941
G Cct2 chaperonin containing TCP1 subunit 2 JBrowse link NW_004936545 7,416,257 7,436,024 RGD:9068941
G Cct3 chaperonin containing TCP1 subunit 3 JBrowse link NW_004936580 5,537,338 5,554,384 RGD:9068941
G Cct4 chaperonin containing TCP1 subunit 4 JBrowse link NW_004936491 7,224,989 7,241,348 RGD:9068941
G Cct5 chaperonin containing TCP1 subunit 5 JBrowse link NW_004936643 2,354,799 2,368,048 RGD:9068941
G Cct6a chaperonin containing TCP1 subunit 6A JBrowse link NW_004936543 7,887,511 7,900,174 RGD:9068941
G Cct7 chaperonin containing TCP1 subunit 7 JBrowse link NW_004936491 17,017,687 17,033,526 RGD:9068941
G Cct8 chaperonin containing TCP1 subunit 8 JBrowse link NW_004936500 12,949,563 12,962,699 RGD:9068941
G Ctnnb1 catenin beta 1 JBrowse link NW_004936473 29,999,542 30,034,610 RGD:9068941
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004936927 134,770 144,057 RGD:9068941
G Fbxo4 F-box protein 4 JBrowse link NW_004936518 855,304 873,927 RGD:9068941
G Hmbox1 homeobox containing 1 JBrowse link NW_004936675 1,578,705 1,741,283 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004936512 11,481,017 11,487,737 RGD:9068941
G Map2k7 mitogen-activated protein kinase kinase 7 JBrowse link NW_004936588 4,882,191 4,891,807 RGD:9068941
G Map3k4 mitogen-activated protein kinase kinase kinase 4 JBrowse link NW_004936489 11,908,083 11,972,186 RGD:9068941
G Mapk1 mitogen-activated protein kinase 1 JBrowse link NW_004936619 1,889,841 1,932,646 RGD:9068941
G Mapk15 mitogen-activated protein kinase 15 JBrowse link NW_004936470 8,420,850 8,425,996 RGD:9068941
G Mapk3 mitogen-activated protein kinase 3 JBrowse link NW_004936501 12,342,670 12,390,650 RGD:9068941
G Mapkapk5 MAPK activated protein kinase 5 JBrowse link NW_004936558 4,414,283 4,448,291 RGD:9068941
G Nek2 NIMA related kinase 2 JBrowse link NW_004936557 1,683,027 1,695,410 RGD:9068941
G Nek7 NIMA related kinase 7 JBrowse link NW_004936567 5,685,619 5,815,094 RGD:9068941
G Parn poly(A)-specific ribonuclease JBrowse link NW_004936501 2,666,908 2,810,159 RGD:9068941
G Pkib cAMP-dependent protein kinase inhibitor beta JBrowse link NW_004936802 1,130,341 1,236,715 RGD:9068941
G Pnkp polynucleotide kinase 3'-phosphatase JBrowse link NW_004936664 3,649,020 3,656,545 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Prkcq protein kinase C theta JBrowse link NW_004936484 8,048,239 8,166,058 RGD:9068941
G Tcp1 t-complex 1 JBrowse link NW_004936489 11,273,335 11,282,811 RGD:9068941
G Tnks tankyrase JBrowse link NW_004936573 788,909 993,453 RGD:9068941
G Xrcc5 X-ray repair cross complementing 5 JBrowse link NW_004936586 1,055,478 1,137,924 RGD:9068941
positive regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link NW_004936551 359,134 534,672 RGD:9068941
G Dhx36 DEAH-box helicase 36 JBrowse link NW_004936519 1,946,684 1,987,036 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link NW_004936555 2,392,202 2,428,857 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
positive regulation of telomeric loop disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
protection from non-homologous end joining at telomere term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941
regulation of telomere maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac8 histone deacetylase 8 JBrowse link NW_004936762 1,425,337 1,652,058 RGD:9068941
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link NW_004936738 2,096,370 2,115,135 RGD:9068941
G Lmna lamin A/C JBrowse link NW_004936580 5,374,208 5,395,442 RGD:9068941
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link NW_004936470 20,480,844 20,485,955 RGD:9068941
G Pif1 PIF1 5'-to-3' DNA helicase JBrowse link NW_004936471 25,165,850 25,173,503 RGD:9068941
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase JBrowse link NW_004936501 4,672,871 4,753,749 RGD:9068941
G Smg5 SMG5 nonsense mediated mRNA decay factor JBrowse link NW_004936580 5,487,522 5,516,448 RGD:9068941
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link NW_004936538 8,126,307 8,361,920 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941
G Upf1 UPF1 RNA helicase and ATPase JBrowse link NW_004936596 2,469,444 2,505,688 RGD:9068941
G Ylpm1 YLP motif containing 1 JBrowse link NW_004936488 3,922,314 3,997,187 RGD:9068941
regulation of telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link NW_004936551 359,134 534,672 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
regulation of telomere maintenance via telomere lengthening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link NW_004936722 320,171 323,703 RGD:9068941
subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101963041 histone H3.3 JBrowse link NW_004936526 2,835,002 2,842,328 RGD:9068941
G LOC101963257 histone H3.3 JBrowse link NW_004936594 959,493 961,703 RGD:9068941
t-circle formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link NW_004936706 1,854,938 1,867,521 RGD:9068941
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit JBrowse link NW_004936501 12,332,135 12,335,081 RGD:9068941
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link NW_004936694 720,585 744,477 RGD:9068941
G Xrcc3 X-ray repair cross complementing 3 JBrowse link NW_004936621 1,462,441 1,474,937 RGD:9068941
telomere assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link NW_004936722 320,171 323,703 RGD:9068941
telomere capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link NW_004936590 4,722,914 4,887,615 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link NW_004936722 320,171 323,703 RGD:9068941
telomere formation via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wrap53 WD repeat containing antisense to TP53 JBrowse link NW_004936595 936,184 952,784 RGD:9068941
telomere maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD shelterin complex subunit and telomerase recruitment factor JBrowse link NW_004936475 18,049,134 18,052,123 RGD:9068941
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link NW_004936877 666,545 669,351 RGD:9068941
G Blm BLM RecQ like helicase JBrowse link NW_004936483 16,194,092 16,295,803 RGD:9068941
G Ccne1 cyclin E1 JBrowse link NW_004936570 5,536,817 5,547,880 RGD:9068941
G Ccne2 cyclin E2 JBrowse link NW_004936544 7,839,730 7,852,251 RGD:9068941
G Ctc1 CST telomere replication complex component 1 JBrowse link NW_004936595 1,456,911 1,476,331 RGD:9068941
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Dclre1c DNA cross-link repair 1C JBrowse link NW_004936613 1,467,797 1,501,107 RGD:9068941
G Dna2 DNA replication helicase/nuclease 2 JBrowse link NW_004936521 9,843,867 9,884,248 RGD:9068941
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Fbxo4 F-box protein 4 JBrowse link NW_004936518 855,304 873,927 RGD:9068941
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link NW_004936727 1,732,323 1,735,128 RGD:9068941
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Parp1 poly(ADP-ribose) polymerase 1 JBrowse link NW_004936526 3,102,468 3,147,601 RGD:9068941
G Parp3 poly(ADP-ribose) polymerase family member 3 JBrowse link NW_004936529 3,291,282 3,297,581 RGD:9068941
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link NW_004936590 4,722,914 4,887,615 RGD:9068941
G Rad51d RAD51 paralog D JBrowse link NW_004936538 119,409 132,830 RGD:9068941
G Recql4 RecQ like helicase 4 JBrowse link NW_004936470 7,755,253 7,761,705 RGD:9068941
G Rif1 replication timing regulatory factor 1 JBrowse link NW_004936469 26,045,500 26,105,980 RGD:9068941
G Rpa1 replication protein A1 JBrowse link NW_004936538 7,941,074 7,997,062 RGD:9068941
G Rpa2 replication protein A2 JBrowse link NW_004936474 12,127,026 12,147,120 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
G Sp100 SP100 nuclear antigen JBrowse link NW_004936525 6,136,343 6,231,051 RGD:9068941
G Stn1 STN1 subunit of CST complex JBrowse link NW_004936600 2,230,754 2,266,956 RGD:9068941
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941
G Tnks2 tankyrase 2 JBrowse link NW_004936601 2,776,338 2,837,703 RGD:9068941
G Wrn WRN RecQ like helicase JBrowse link NW_004936792 862,659 1,005,065 RGD:9068941
G Znf365 zinc finger protein 365 JBrowse link NW_004936614 833,665 853,547 RGD:9068941
telomere maintenance in response to DNA damage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rif1 replication timing regulatory factor 1 JBrowse link NW_004936469 26,045,500 26,105,980 RGD:9068941
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
telomere maintenance via base-excision repair term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link NW_004936877 666,545 669,351 RGD:9068941
telomere maintenance via recombination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca2 BRCA2 DNA repair associated JBrowse link NW_004936472 26,945,659 27,017,693 RGD:9068941
G Nsmce2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase JBrowse link NW_004936470 22,447,278 22,667,302 RGD:9068941
G Rad51 RAD51 recombinase JBrowse link NW_004936471 4,119,020 4,136,811 RGD:9068941
G Rad51c RAD51 paralog C JBrowse link NW_004936490 4,440,638 4,473,301 RGD:9068941
G Smc5 structural maintenance of chromosomes 5 JBrowse link NW_004936503 6,388,556 6,483,293 RGD:9068941
G Smc6 structural maintenance of chromosomes 6 JBrowse link NW_004936493 13,191,389 13,250,788 RGD:9068941
G Tep1 telomerase associated protein 1 JBrowse link NW_004936877 575,264 613,965 RGD:9068941
G Xrcc3 X-ray repair cross complementing 3 JBrowse link NW_004936621 1,462,441 1,474,937 RGD:9068941
telomere maintenance via semi-conservative replication term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upf1 UPF1 RNA helicase and ATPase JBrowse link NW_004936596 2,469,444 2,505,688 RGD:9068941
telomere maintenance via telomerase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004936927 134,770 144,057 RGD:9068941
G Gar1 GAR1 ribonucleoprotein JBrowse link NW_004936563 1,006,475 1,014,808 RGD:9068941
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link NW_004936835 316,767 321,999 RGD:9068941
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link NW_004936476 15,830,459 15,836,994 RGD:9068941
G Nhp2 NHP2 ribonucleoprotein JBrowse link NW_004936647 520,542 525,226 RGD:9068941
G Nop10 NOP10 ribonucleoprotein JBrowse link NW_004936673 2,829,599 2,830,407 RGD:9068941
G Parp4 poly(ADP-ribose) polymerase family member 4 JBrowse link NW_004936720 2,049,045 2,138,649 RGD:9068941
G Pinx1 PIN2 (TERF1) interacting telomerase inhibitor 1 JBrowse link NW_004936675 2,641,851 2,706,201 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Ptges3 prostaglandin E synthase 3 JBrowse link NW_004936646 969,674 990,532 RGD:9068941
G Rad50 RAD50 double strand break repair protein JBrowse link NW_004936647 2,546,100 2,637,524 RGD:9068941
G Tep1 telomerase associated protein 1 JBrowse link NW_004936877 575,264 613,965 RGD:9068941
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Tert telomerase reverse transcriptase JBrowse link NW_004936815 468,987 492,666 RGD:9068941
G Wrap53 WD repeat containing antisense to TP53 JBrowse link NW_004936595 936,184 952,784 RGD:9068941
telomere maintenance via telomere lengthening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctc1 CST telomere replication complex component 1 JBrowse link NW_004936595 1,456,911 1,476,331 RGD:9068941
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Rad51 RAD51 recombinase JBrowse link NW_004936471 4,119,020 4,136,811 RGD:9068941
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit JBrowse link NW_004936501 12,332,135 12,335,081 RGD:9068941
G Stn1 STN1 subunit of CST complex JBrowse link NW_004936600 2,230,754 2,266,956 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941
G Zbtb48 zinc finger and BTB domain containing 48 JBrowse link NW_004936623 1,334,084 1,342,341 RGD:9068941
telomere maintenance via telomere trimming term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Xrcc3 X-ray repair cross complementing 3 JBrowse link NW_004936621 1,462,441 1,474,937 RGD:9068941
telomeric 3' overhang formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link NW_004936674 466,495 528,072 RGD:9068941
G Nbn nibrin JBrowse link NW_004936544 3,773,828 3,812,673 RGD:9068941
G Rad50 RAD50 double strand break repair protein JBrowse link NW_004936647 2,546,100 2,637,524 RGD:9068941
telomeric D-loop disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blm BLM RecQ like helicase JBrowse link NW_004936483 16,194,092 16,295,803 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Recql4 RecQ like helicase 4 JBrowse link NW_004936470 7,755,253 7,761,705 RGD:9068941
G Slx1a SLX1 homolog A, structure-specific endonuclease subunit JBrowse link NW_004936501 12,332,135 12,335,081 RGD:9068941
G Slx4 SLX4 structure-specific endonuclease subunit JBrowse link NW_004936694 720,585 744,477 RGD:9068941
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Wrn WRN RecQ like helicase JBrowse link NW_004936792 862,659 1,005,065 RGD:9068941
telomeric DNA-containing double minutes formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link NW_004936706 1,854,938 1,867,521 RGD:9068941
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link NW_004936501 2,301,072 2,329,346 RGD:9068941
G Xrcc1 X-ray repair cross complementing 1 JBrowse link NW_004936706 752,571 783,746 RGD:9068941
G Xrcc4 X-ray repair cross complementing 4 JBrowse link NW_004936469 2,248,367 2,495,215 RGD:9068941
telomeric loop disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtel1 regulator of telomere elongation helicase 1 JBrowse link NW_004936514 10,920,979 10,954,483 RGD:9068941
telomeric loop formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dclre1b DNA cross-link repair 1B JBrowse link NW_004936690 2,265,957 2,273,915 RGD:9068941
G Pot1 protection of telomeres 1 JBrowse link NW_004936605 836,824 919,099 RGD:9068941
G Terf1 telomeric repeat binding factor 1 JBrowse link NW_004936648 1,809,395 1,835,890 RGD:9068941
G Terf2 telomeric repeat binding factor 2 JBrowse link NW_004936475 19,469,501 19,498,494 RGD:9068941
G Terf2ip TERF2 interacting protein JBrowse link NW_004936475 24,312,140 24,319,492 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11931
    cellular process 11113
      cellular component organization or biogenesis 4869
        cellular component organization 4791
          organelle organization 2956
            chromosome organization 861
              telomere organization 119
                shelterin complex assembly + 1
                subtelomeric heterochromatin assembly + 3
                subtelomeric heterochromatin organization + 3
                telomere assembly + 7
                telomere maintenance + 117
                telomere-telomerase complex assembly 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.