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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA geometric change
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Accession:GO:0032392 term browser browse the term
Definition:The process in which a transformation is induced in the geometry of a DNA double helix, resulting in a change in twist, writhe, or both, but with no change in linking number. Includes the unwinding of double-stranded DNA by helicases.
Comment:Note that DNA geometric change and DNA topological change (GO:0006265) are distinct, but are usually coupled in vivo.


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DNA geometric change term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmgb1 high mobility group box 1 IDA
ISS
PMID:10962007
GO_REF:0000024
AgBase PMID:10962007 GO_REF:0000024, RGD:8554262 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb3 high mobility group box 3 ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr17:36,690,190...36,694,329
Ensembl chr17:36,690,249...36,694,325
Ensembl chr14:36,690,249...36,694,325
JBrowse link
G LOC108349189 high mobility group protein B1 pseudogene ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr  X:115,351,012...115,351,755
Ensembl chr  X:115,351,114...115,351,755
JBrowse link
G LOC688583 similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a) ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr14:51,458,436...51,462,755
Ensembl chr17:36,690,249...36,694,325
Ensembl chr14:36,690,249...36,694,325
JBrowse link
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr16:37,500,017...37,502,245 JBrowse link
G Mterf1 mitochondrial transcription termination factor 1 ISO
ISS
(PMID:20550934)
GO_REF:0000024
RGD
UniProt
PMID:20550934 GO_REF:0000024 NCBI chr 4:27,365,310...27,372,374
Ensembl chr 4:27,365,376...27,372,372
JBrowse link
DNA duplex unwinding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr5 actin related protein 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:155,118,567...155,132,073
Ensembl chr 3:155,119,042...155,131,829
JBrowse link
G Actr8 actin related protein 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:6,047,977...6,062,586
Ensembl chr16:6,048,004...6,062,550
JBrowse link
G Anxa1 annexin A1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:20655937, PMID:21873635 RGD:7421590, RGD:13792537 NCBI chr 1:237,893,983...237,910,002
Ensembl chr 1:237,893,966...237,910,012
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22055184)
Ensembl
UniProt
RGD
PMID:22055184 GO_REF:0000024, GO_REF:0000107 NCBI chr20:55,253,670...55,557,249
Ensembl chr20:55,253,686...55,556,473
JBrowse link
G Atrx ATRX, chromatin remodeler IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Blm BLM RecQ like helicase ISO
IBA
(PMID:11735402), (PMID:24816114), (PMID:25901030)
PMID:21873635
RGD PMID:11735402, PMID:24816114, PMID:25901030, PMID:21873635 RGD:13792537 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Brip1 BRCA1 interacting protein C-terminal helicase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:73,507,009...73,632,742
Ensembl chr10:73,507,100...73,629,581
JBrowse link
G Chd1 chromodomain helicase DNA binding protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:57,692,828...57,756,762
Ensembl chr 1:57,692,836...57,755,485
JBrowse link
G Chd1l chromodomain helicase DNA binding protein 1-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:199,714,044...199,792,270
Ensembl chr 2:199,716,713...199,771,896
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:134,757,934...134,873,053
Ensembl chr 1:134,757,934...134,871,167
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:55,943,467...55,970,417
Ensembl chr10:55,943,446...55,965,216
JBrowse link
G Chd4 chromodomain helicase DNA binding protein 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:157,612,531...157,645,660
Ensembl chr 4:157,612,536...157,645,659
JBrowse link
G Chd5 chromodomain helicase DNA binding protein 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107
JBrowse link
G Chd6 chromodomain helicase DNA binding protein 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:156,937,746...157,099,328
Ensembl chr 3:156,937,733...157,099,306
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,612,932...28,672,574
Ensembl chr15:28,612,932...28,672,569
JBrowse link
G Chd9 chromodomain helicase DNA binding protein 9 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:17,364,969...17,517,757
Ensembl chr19:17,366,828...17,494,585
JBrowse link
G Chtf18 chromosome transmission fidelity factor 18 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:15,090,762...15,098,825
Ensembl chr10:15,090,316...15,098,791
JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:39,077,580...39,087,880
Ensembl chr19:39,077,580...39,087,880
JBrowse link
G Ddx1 DEAD-box helicase 1 ISO
ISS
(PMID:18710941)
GO_REF:0000024
RGD
UniProt
PMID:18710941 GO_REF:0000024 NCBI chr 6:38,422,892...38,453,762
Ensembl chr 6:38,422,888...38,453,797
JBrowse link
G Ddx11 DEAD/H-box helicase 11 ISO
IBA
(PMID:10648783), (PMID:18499658), (PMID:26503245)
PMID:21873635
RGD PMID:10648783, PMID:18499658, PMID:26503245, PMID:21873635 RGD:13792537 NCBI chr 9:114,113,642...114,133,908
Ensembl chr 9:114,111,580...114,132,492
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Dhx36 DEAH-box helicase 36 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:12711669), (PMID:21561811), (PMID:9111062) RGD PMID:9111062, PMID:12711669, PMID:21561811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dna2 DNA replication helicase/nuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108
G Dscc1 DNA replication and sister chromatid cohesion 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:94,759,076...94,774,787
Ensembl chr 7:94,758,800...94,774,569
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:39,434,617...39,473,392
Ensembl chr 2:39,434,634...39,472,017
JBrowse link
G Fancm FA complementation group M IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:86,823,195...86,877,067
Ensembl chr 6:86,823,684...86,876,633
JBrowse link
G Fbh1 F-box DNA helicase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:70,399,093...70,437,151
Ensembl chr17:70,399,049...70,437,144
JBrowse link
G Gins2 GINS complex subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:54,151,048...54,163,701
Ensembl chr19:54,151,048...54,163,608
JBrowse link
G Gins4 GINS complex subunit 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:73,584,412...73,596,808
Ensembl chr16:73,584,521...73,596,793
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:57,942,057...58,068,892
Ensembl chr15:57,942,059...58,068,892
JBrowse link
G Helb DNA helicase B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:64,860,641...64,888,146
Ensembl chr 7:64,860,666...64,887,448
JBrowse link
G Ighmbp2 immunoglobulin mu DNA binding protein 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:218,509,274...218,531,922
Ensembl chr 1:218,508,950...218,532,142
JBrowse link
G Ino80 INO80 complex ATPase subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:111,186,371...111,266,542
Ensembl chr 3:111,187,711...111,266,542
JBrowse link
G Mcm3 minichromosome maintenance complex component 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:26,914,057...26,932,201
Ensembl chr 9:26,914,057...26,932,201
JBrowse link
G Mcm5 minichromosome maintenance complex component 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:14,523,482...14,561,281
Ensembl chr19:14,523,554...14,561,278
JBrowse link
G Mcm8 minichromosome maintenance 8 homologous recombination repair factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:125,470,499...125,500,795
Ensembl chr 3:125,470,551...125,500,795
JBrowse link
G Mcm9 minichromosome maintenance 9 homologous recombination repair factor ISO (PMID:26300262) RGD PMID:26300262 NCBI chr20:34,818,093...34,930,157
Ensembl chr20:34,846,804...34,929,965
JBrowse link
G Mcmdc1 minichromosome maintenance deficient domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108
G Mre11 MRE11 homolog, double strand break repair nuclease ISO
IEA
(PMID:15790808)
GO_REF:0000107
RGD
Ensembl
PMID:15790808 GO_REF:0000107 NCBI chr 8:13,304,355...13,350,329
Ensembl chr 8:13,305,152...13,352,489
JBrowse link
G Nbn nibrin ISO
IBA
IEA
(PMID:15790808)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15790808, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 5:29,622,347...29,656,877
Ensembl chr 5:29,622,281...29,656,864
JBrowse link
G Pif1 PIF1 5'-to-3' DNA helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:71,124,477...71,133,460
Ensembl chr 8:71,125,414...71,132,629
JBrowse link
G Polq DNA polymerase theta IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:66,585,860...66,695,369
Ensembl chr11:66,585,881...66,695,353
JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:16030011) RGD PMID:16030011 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Rad50 RAD50 double strand break repair protein ISO
IBA
(PMID:15790808)
PMID:21873635
RGD PMID:15790808, PMID:21873635 RGD:13792537 NCBI chr10:39,002,130...39,054,042
Ensembl chr10:39,001,498...39,054,142
JBrowse link
G Recql RecQ like helicase IEA
IBA
GO_REF:0000108
PMID:21873635
GOC PMID:21873635 GO_REF:0000108, RGD:13792537 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 ISO
IBA
(PMID:19177149)
PMID:21873635
RGD PMID:19177149, PMID:21873635 RGD:13792537 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Recql5 RecQ like helicase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,443,735...104,482,889
Ensembl chr10:104,443,736...104,482,838
JBrowse link
G Rfc2 replication factor C subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:25,130,375...25,143,480
Ensembl chr12:25,130,377...25,143,480
JBrowse link
G Rfc3 replication factor C subunit 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:1,460,581...1,471,344
Ensembl chr12:1,460,538...1,471,357
JBrowse link
G Rfc4 replication factor C subunit 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:81,358,592...81,373,044
Ensembl chr11:81,358,592...81,373,043
JBrowse link
G Rfc5 replication factor C subunit 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:44,931,494...44,941,051
Ensembl chr12:44,931,494...44,941,324
JBrowse link
G RGD1564855 similar to RuvB-like protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:1,854,580...1,856,333
Ensembl chr  X:1,854,751...1,856,258
JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 ISO
IBA
IEA
(MGI:MGI:5522574|PMID:24115439)
PMID:21873635
GO_REF:0000108
RGD
GOC
PMID:24115439, PMID:21873635 GO_REF:0000108, MGI:MGI:5522574, RGD:13792537 NCBI chr 3:176,818,012...176,856,531
Ensembl chr 3:176,818,437...176,856,531
JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:120,411,917...120,447,458
Ensembl chr 4:120,411,991...120,447,455
JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:101,413,766...101,426,970
Ensembl chr 1:101,413,766...101,426,852
JBrowse link
G Slc25a16 solute carrier family 25 member 16 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:27,283,383...27,308,069
Ensembl chr20:27,254,984...27,308,069
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Sub1 SUB1 regulator of transcription IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:62,019,902...62,034,704
Ensembl chr 2:62,022,567...62,034,628
JBrowse link
G Supv3l1 Suv3 like RNA helicase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12466530)
Ensembl
UniProt
RGD
PMID:12466530 GO_REF:0000024, GO_REF:0000107 NCBI chr20:32,057,530...32,080,170
Ensembl chr20:32,057,454...32,080,088
JBrowse link
G Trex1 three prime repair exonuclease 1 ISO (MGI:MGI:5637600|PMID:25848017) RGD PMID:25848017 MGI:MGI:5637600 NCBI chr 8:117,796,127...117,797,427
Ensembl chr 8:117,796,128...117,797,427
JBrowse link
G Wrn WRN RecQ like helicase ISO
IBA
(PMID:11735402), (PMID:26420422)
PMID:21873635
RGD PMID:11735402, PMID:26420422, PMID:21873635 RGD:13792537 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G Wrnip1 WRN helicase interacting protein 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:32,933,395...32,953,641
Ensembl chr17:32,933,396...32,953,641
JBrowse link
G Xrcc5 X-ray repair cross complementing 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:79,659,275...79,748,050
Ensembl chr 9:79,659,251...79,748,078
JBrowse link
G Xrcc6 X-ray repair cross complementing 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:123,259,881...123,280,613
Ensembl chr 7:123,259,761...123,280,612
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
DNA rewinding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 ISO
IBA
(PMID:21078962), (PMID:22705370)
PMID:21873635
RGD PMID:21078962, PMID:22705370, PMID:21873635 RGD:13792537 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
DNA strand renaturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:144,865,302...144,871,592
Ensembl chr 7:144,865,608...144,871,585
JBrowse link
G Rad54l RAD54 like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:134,948,511...134,978,125
Ensembl chr 5:134,948,512...134,978,125
JBrowse link
G Recql RecQ like helicase ISO (PMID:19177149) RGD PMID:19177149 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 ISO (PMID:19177149) RGD PMID:19177149 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:134,634,651...134,719,503
Ensembl chr  X:134,647,703...134,719,097
JBrowse link
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:79,943,775...79,990,230
Ensembl chr 9:79,944,132...79,990,229
JBrowse link
G Tp53 tumor protein p53 ISO
ISS
(PMID:8183576)
GO_REF:0000024
RGD
UniProt
PMID:8183576 GO_REF:0000024 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Zranb3 zinc finger RANBP2-type containing 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:44,661,375...44,812,430
Ensembl chr13:44,661,398...44,798,543
JBrowse link
DNA unwinding involved in DNA replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO
IBA
(MGI:MGI:2156014|PMID:10531422)
PMID:21873635
RGD PMID:10531422, PMID:21873635 MGI:MGI:2156014, RGD:13792537 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Mcm4 minichromosome maintenance complex component 4 ISO
IBA
PR:P97311|PR:Q61881 (MGI:MGI:3582148|PMID:15917436)
PMID:21873635
RGD PMID:15917436, PMID:21873635 MGI:MGI:3582148, RGD:13792537 NCBI chr11:89,511,191...89,524,892
Ensembl chr11:89,511,191...89,524,892
JBrowse link
G Mcm6 minichromosome maintenance complex component 6 ISO
IBA
IEA
PR:P49717|PR:Q61881 (MGI:MGI:3582148|PMID:15917436)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:15917436, PMID:21873635 GO_REF:0000107, MGI:MGI:3582148, RGD:13792537 NCBI chr13:45,042,882...45,068,073
Ensembl chr13:45,042,882...45,068,077
JBrowse link
G Mcm7 minichromosome maintenance complex component 7 ISO
IBA
PR:P49717|PR:P97311 (MGI:MGI:3582148|PMID:15917436)
PMID:21873635
RGD PMID:15917436, PMID:21873635 MGI:MGI:3582148, RGD:13792537 NCBI chr12:19,306,615...19,313,877
Ensembl chr12:19,306,607...19,314,016
JBrowse link
G Mcmdc2 minichromosome maintenance domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:8,973,861...9,039,616
Ensembl chr 5:8,978,010...9,038,594
JBrowse link
G Pura purine rich element binding protein A ISO
IEA
(PMID:15777841)
GO_REF:0000107
RGD
Ensembl
PMID:15777841 GO_REF:0000107 NCBI chr18:29,104,712...29,114,918
Ensembl chr18:29,110,242...29,111,156
JBrowse link
G Rad51 RAD51 recombinase ISO (PMID:7988572) RGD PMID:7988572 NCBI chr 3:110,918,240...110,942,920
Ensembl chr 3:110,918,243...110,942,917
JBrowse link
G Recql RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:176,581,892...176,606,520
Ensembl chr 4:176,581,897...176,606,382
JBrowse link
G Recql4 RecQ like helicase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:117,765,892...117,773,128
Ensembl chr 7:117,763,783...117,773,134
JBrowse link
G Recql5 RecQ like helicase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:104,443,735...104,482,889
Ensembl chr10:104,443,736...104,482,838
JBrowse link
G Rpa1 replication protein A1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 ISO
IEA
(PMID:26446790)
GO_REF:0000107
RGD
Ensembl
PMID:26446790 GO_REF:0000107 NCBI chr 4:68,634,844...68,645,112
Ensembl chr 4:68,634,929...68,645,172
JBrowse link
G Twnk twinkle mtDNA helicase ISO (MGI:MGI:2136707|PMID:11431692)
(PMID:15167897)
RGD PMID:11431692, PMID:15167897 MGI:MGI:2136707 NCBI chr 1:264,756,060...264,762,892
Ensembl chr 1:264,756,499...264,762,892
JBrowse link
G Wrn WRN RecQ like helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
G-quadruplex DNA unwinding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase ISO
IBA
(PMID:11735402)
PMID:21873635
UniProtKB:O09053 (MGI:MGI:5700122|PMID:26195664)
RGD PMID:11735402, PMID:26195664, PMID:21873635 MGI:MGI:5700122, RGD:13792537 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Ddx11 DEAD/H-box helicase 11 ISO (PMID:26503245) RGD PMID:26503245 NCBI chr 9:114,113,642...114,133,908
Ensembl chr 9:114,111,580...114,132,492
JBrowse link
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(MGI:MGI:6201778|PMID:25611385)
(PMID:16150737), (PMID:18842585)
UniProt
RGD
PMID:16150737, PMID:18842585, PMID:25611385 GO_REF:0000024, MGI:MGI:6201778 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:21561811) RGD PMID:21561811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 IDA PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Wrn WRN RecQ like helicase ISO
IBA
(PMID:11735402)
PMID:21873635
UniProtKB:O88700 (MGI:MGI:5700122|PMID:26195664)
RGD PMID:11735402, PMID:26195664, PMID:21873635 MGI:MGI:5700122, RGD:13792537 NCBI chr16:62,483,773...62,619,018
Ensembl chr16:62,483,761...62,615,375
JBrowse link
negative regulation of DNA duplex unwinding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:12711669)
Ensembl
UniProt
RGD
PMID:12711669 GO_REF:0000024, GO_REF:0000107 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
negative regulation of DNA helicase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcm2 minichromosome maintenance complex component 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO (PMID:11445587) RGD PMID:11445587 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:17466626) RGD PMID:17466626 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
positive regulation of DNA helicase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link
G Ssbp1 single stranded DNA binding protein 1 ISO
IEA
(PMID:15167897)
GO_REF:0000107
RGD
Ensembl
PMID:15167897 GO_REF:0000107 NCBI chr 4:68,634,844...68,645,112
Ensembl chr 4:68,634,929...68,645,172
JBrowse link
regulation of DNA helicase activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pot1 protection of telomeres 1 ISO (PMID:19734539) RGD PMID:19734539 NCBI chr 4:51,888,632...51,946,764
Ensembl chr 4:51,888,634...51,946,715
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          organelle organization 4073
            chromosome organization 1250
              DNA conformation change 312
                DNA geometric change 94
                  DNA duplex unwinding + 83
                  DNA rewinding 2
                  DNA strand renaturation + 9
                  G-quadruplex DNA unwinding + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.