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ONTOLOGY REPORT - ANNOTATIONS


Term:stereocilium
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Accession:GO:0032420 term browser browse the term
Definition:An actin-based protrusion from the apical surface of auditory and vestibular hair cells and of neuromast cells. These protrusions are supported by a bundle of cross-linked actin filaments (an actin cable), oriented such that the plus (barbed) ends are at the tip of the protrusion, capped by a tip complex which bridges to the plasma. Bundles of stereocilia act as mechanosensory organelles.


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stereocilium term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adcy6 adenylate cyclase 6 JBrowse link 7 140,270,678 140,291,722 RGD:1600115
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 2 8,926,843 9,504,455 RGD:8548636
RGD:1624291
G Atp8b1 ATPase phospholipid transporting 8B1 JBrowse link 18 60,013,388 60,152,920 RGD:1624291
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link 19 11,385,921 11,421,523 RGD:1624291
G Calb1 calbindin 1 JBrowse link 5 29,538,380 29,562,774 RGD:7175527
G Calb2 calbindin 2 JBrowse link 19 41,482,743 41,509,617 RGD:7175527
G Cdh23 cadherin-related 23 JBrowse link 20 29,857,018 30,263,758 RGD:1600115
RGD:1624291
G Cib2 calcium and integrin binding family member 2 JBrowse link 8 59,123,078 59,139,946 RGD:1624291
RGD:1600115
G Clic5 chloride intracellular channel 5 JBrowse link 9 19,121,676 19,372,673 RGD:1624291
G Clrn1 clarin 1 JBrowse link 2 149,049,925 149,088,787 RGD:1624291
RGD:1600115
G Dock4 dedicator of cytokinesis 4 JBrowse link 6 60,374,839 60,782,648 RGD:1624291
G Elmod3 ELMO domain containing 3 JBrowse link 4 100,422,256 100,465,152 RGD:1600115
G Eps8 epidermal growth factor receptor pathway substrate 8 JBrowse link 4 171,475,155 171,645,620 RGD:1600115
RGD:1624291
G Espn espin JBrowse link 5 169,293,356 169,331,338 RGD:1624291
G Fscn2 fascin actin-bundling protein 2, retinal JBrowse link 10 109,528,307 109,540,675 RGD:1624291
G Grxcr1 glutaredoxin and cysteine rich domain containing 1 JBrowse link 14 41,663,688 41,787,331 RGD:1624291
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Loxhd1 lipoxygenase homology domains 1 JBrowse link 18 73,645,365 73,812,271 RGD:1624291
G Myo15a myosin XVA JBrowse link 10 46,840,098 46,897,362 RGD:1624291
G Myo1c myosin 1C JBrowse link 10 63,803,311 63,819,614 RGD:1624291
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
G Ocm2 oncomodulin 2 JBrowse link 12 12,611,121 12,634,472 RGD:7175527
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1624291
G Pcdh15 protocadherin related 15 JBrowse link 20 14,952,213 15,334,745 RGD:1624291
G Pdzd7 PDZ domain containing 7 JBrowse link 1 264,776,393 264,796,206 RGD:1624291
RGD:13792537
G Pls3 plastin 3 JBrowse link X 119,030,311 119,124,268 RGD:731234
G Prom1 prominin 1 JBrowse link 14 71,532,321 71,637,400 RGD:1624291
G Pvalb parvalbumin JBrowse link 7 119,428,657 119,443,674 RGD:7175527
G Rdx radixin JBrowse link 8 56,570,728 56,612,851 RGD:1624291
G Rhoc ras homolog family member C JBrowse link 2 207,271,692 207,278,010 RGD:1624291
G Ripor2 RHO family interacting cell polarization regulator 2 JBrowse link 17 42,324,594 42,549,907 RGD:10047244
RGD:1624291
G Slc4a7 solute carrier family 4 member 7 JBrowse link 15 11,832,611 11,912,923 RGD:8548636
G Slc9a3r1 SLC9A3 regulator 1 JBrowse link 10 103,713,045 103,730,145 RGD:1624291
G Slc9a3r2 SLC9A3 regulator 2 JBrowse link 10 14,003,330 14,015,066 RGD:1624291
G Tprn taperin JBrowse link 3 2,480,232 2,487,710 RGD:1600115
RGD:1624291
G Triobp TRIO and F-actin binding protein JBrowse link 7 120,173,892 120,237,145 RGD:1624291
G Tspear thrombospondin-type laminin G domain and EAR repeats JBrowse link 20 11,501,510 11,529,210 RGD:1624291
G Twf2 twinfilin actin-binding protein 2 JBrowse link 8 114,897,011 114,909,531 RGD:1624291
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:8548636
RGD:13792537
RGD:1624291
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:8548636
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1600128
RGD:13792537
RGD:1624291
RGD:1600115
G Zswim6 zinc finger, SWIM-type containing 6 JBrowse link 2 38,978,042 39,042,886 RGD:1624291
stereocilium base term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 JBrowse link 18 36,308,925 36,334,643 RGD:1600115
RGD:1624291
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
G Tprn taperin JBrowse link 3 2,480,232 2,487,710 RGD:1600115
RGD:1624291
G Triobp TRIO and F-actin binding protein JBrowse link 7 120,173,892 120,237,145 RGD:1624291
stereocilium membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1b calcium voltage-gated channel subunit alpha1 B JBrowse link 3 1,740,026 1,924,959 RGD:1624291
G Myo1c myosin 1C JBrowse link 10 63,803,311 63,819,614 RGD:1600115
G Ripor2 RHO family interacting cell polarization regulator 2 JBrowse link 17 42,324,594 42,549,907 RGD:10047244
G Ush2a usherin JBrowse link 13 106,750,738 107,434,195 RGD:1624291
G Vezt vezatin, adherens junctions transmembrane protein JBrowse link 7 34,888,487 34,951,712 RGD:1600115
stereocilium shaft term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fchsd2 FCH and double SH3 domains 2 JBrowse link 1 166,140,025 166,395,915 RGD:1624291
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 JBrowse link 18 36,308,925 36,334,643 RGD:1600115
RGD:1624291
G Triobp TRIO and F-actin binding protein JBrowse link 7 120,173,892 120,237,145 RGD:1624291
stereocilium tip term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc14a cell division cycle 14A JBrowse link 2 219,302,577 219,458,345 RGD:1624291
G Cdh23 cadherin-related 23 JBrowse link 20 29,857,018 30,263,758 RGD:1624291
G Ceacam16 CEA cell adhesion molecule 16, tectorial membrane component JBrowse link 1 80,773,819 80,783,898 RGD:1624291
RGD:13792537
RGD:1600115
G Coro1a coronin 1A JBrowse link 1 198,123,883 198,128,890 RGD:1624291
G Eps8 epidermal growth factor receptor pathway substrate 8 JBrowse link 4 171,475,155 171,645,620 RGD:1624291
G Eps8l2 EPS8-like 2 JBrowse link 1 214,327,992 214,353,466 RGD:1624291
G Espn espin JBrowse link 5 169,293,356 169,331,338 RGD:1600115
RGD:1624291
G Espnl espin-like JBrowse link 9 98,459,175 98,484,930 RGD:1624291
G Homer2 homer scaffold protein 2 JBrowse link 1 143,443,300 143,535,579 RGD:1624291
RGD:1600115
G Lhfpl5 LHFPL tetraspan subfamily member 5 JBrowse link 20 5,815,837 5,826,137 RGD:1624291
G Morn4 MORN repeat containing 4 JBrowse link 1 261,323,079 261,333,383 RGD:1624291
RGD:1600115
G Myo3a myosin IIIA JBrowse link 17 88,952,635 89,167,538 RGD:1624291
G Myo3b myosin IIIB JBrowse link 3 56,355,433 56,717,740 RGD:1624291
G Pdzd7 PDZ domain containing 7 JBrowse link 1 264,776,393 264,796,206 RGD:13792537
G Slc9a3r1 SLC9A3 regulator 1 JBrowse link 10 103,713,045 103,730,145 RGD:1624291
G Strc stereocilin JBrowse link 3 113,324,403 113,343,513 RGD:1624291
RGD:13792537
G Tmc1 transmembrane channel-like 1 JBrowse link 1 238,336,919 238,525,792 RGD:1624291
G Tmc2 transmembrane channel-like 2 JBrowse link 3 122,720,769 122,790,100 RGD:1624291
G Ush1c USH1 protein network component harmonin JBrowse link 1 102,207,096 102,256,779 RGD:13792537
G Whrn whirlin JBrowse link 5 79,235,541 79,317,206 RGD:1624291
RGD:13800540
RGD:13792537
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19809
    cellular anatomical entity 19424
      organelle 12542
        stereocilium 59
          actin filament bundle of stereocilium 0
          stereocilium base 4
          stereocilium membrane 5
          stereocilium shaft 3
          stereocilium tip 20
Path 2
Term Annotations click to browse term
  cellular_component 19809
    cellular anatomical entity 19424
      cell projection 2467
        plasma membrane bounded cell projection 2407
          neuron projection 1631
            stereocilium 59
              actin filament bundle of stereocilium 0
              stereocilium base 4
              stereocilium membrane 5
              stereocilium shaft 3
              stereocilium tip 20
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.