Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of interferon-beta production
go back to main search page
Accession:GO:0032648 term browser browse the term
Definition:Any process that modulates the frequency, rate, or extent of interferon-beta production.
Synonyms:exact_synonym: regulation of IFN-beta production
 narrow_synonym: regulation of interferon-beta biosynthetic process;   regulation of interferon-beta secretion
 alt_id: GO:0035547;   GO:0045357


show annotations for term's descendants           Sort by:
 
regulation of interferon-beta production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNF216 ring finger protein 216 IEA Ensembl GO_REF:0000107 NCBI chr 3:4,158,447...4,329,458
Ensembl chr 3:4,158,448...4,329,386
JBrowse link
G TIRAP TIR domain containing adaptor protein ISO (MGI:4942245|PMID:14630816) BHF-UCL PMID:14630816 MGI:4942245 NCBI chr 9:53,374,559...53,394,172
Ensembl chr 9:53,375,642...53,394,165
JBrowse link
G TRAF3 TNF receptor associated factor 3 IEA Ensembl GO_REF:0000107
G TRIM38 tripartite motif containing 38 IEA Ensembl GO_REF:0000107 NCBI chr 7:20,682,536...20,694,340
Ensembl chr 7:20,682,652...20,704,192
JBrowse link
negative regulation of interferon-beta production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG9A autophagy related 9A ISO (MGI:5569198|PMID:24670807) MGI PMID:24670807 MGI:5569198 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,282,516
JBrowse link
G CACTIN cactin, spliceosome C complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 2:75,049,250...75,065,990
Ensembl chr 2:75,049,261...75,065,300
JBrowse link
G CREBBP CREB binding protein ISO (MGI:2151262|PMID:11583620) CAFA PMID:11583620 MGI:2151262 NCBI chr 3:38,388,366...38,530,243
Ensembl chr 3:38,388,547...38,530,230
JBrowse link
G IRF3 interferon regulatory factor 3 ISO (MGI:3828224|PMID:18851954) MGI PMID:18851954 MGI:3828224 NCBI chr 6:54,701,733...54,706,079
Ensembl chr 6:54,701,668...54,707,151
JBrowse link
G LOC100522011 apoptosis-associated speck-like protein containing a CARD IEA Ensembl GO_REF:0000107 NCBI chr 3:17,305,921...17,307,521
Ensembl chr 3:17,306,179...17,307,512
JBrowse link
G NLRC3 NLR family CARD domain containing 3 ISO (MGI:5568884|PMID:24560620) UniProt PMID:24560620 MGI:5568884 NCBI chr 3:38,673,590...38,719,188
Ensembl chr 3:38,673,622...38,717,451
JBrowse link
G NLRX1 NLR family member X1 IEA Ensembl GO_REF:0000107 NCBI chr 9:46,384,373...46,400,752
Ensembl chr 9:46,384,375...46,400,750
JBrowse link
G NMI N-myc and STAT interactor IEA Ensembl GO_REF:0000107 NCBI chr15:941,379...966,519
Ensembl chr15:941,505...965,443
JBrowse link
G PPM1B protein phosphatase, Mg2+/Mn2+ dependent 1B ISO (PMID:22750291) UniProtKB PMID:22750291 NCBI chr 3:96,237,660...96,317,278 JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S IEA Ensembl GO_REF:0000107 NCBI chr 2:73,607,815...73,680,685
Ensembl chr 2:73,574,854...73,680,685
JBrowse link
G REL REL proto-oncogene, NF-kB subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:80,861,862...80,912,233
Ensembl chr 3:80,870,860...80,911,956
JBrowse link
G RELB RELB proto-oncogene, NF-kB subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:51,444,670...51,480,350
Ensembl chr 6:51,444,636...51,480,320
JBrowse link
G SIRPA signal regulatory protein alpha ISO (MGI:3760575|PMID:17954568) ARUK-UCL PMID:17954568 MGI:3760575 NCBI chr17:33,566,270...33,611,375 JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TRAIP TRAF interacting protein IEA Ensembl GO_REF:0000107 NCBI chr13:32,332,336...32,380,988
Ensembl chr13:32,332,339...32,379,766
JBrowse link
G YY1 YY1 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 7:121,132,168...121,170,699
Ensembl chr 7:121,131,917...121,170,697
JBrowse link
positive regulation of interferon-beta production term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX3X DEAD-box helicase 3 X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:36,988,031...37,005,496
Ensembl chr  X:36,988,031...37,044,769
JBrowse link
G DDX58 DExD/H-box helicase 58 ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
Ensembl
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr10:33,891,720...33,976,151
Ensembl chr10:33,865,838...33,933,455
JBrowse link
G DHX58 DExH-box helicase 58 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:20,647,698...20,656,691
Ensembl chr12:20,647,692...20,656,692
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G FLOT1 flotillin 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:23,253,157...23,265,165
Ensembl chr 7:23,253,160...23,265,106
JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:4367121|PMID:19890330) UniProt PMID:19890330 MGI:4367121 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IEA Ensembl GO_REF:0000107 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G IFIH1 interferon induced with helicase C domain 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:68,930,998...68,985,145
Ensembl chr15:68,928,244...68,985,074
JBrowse link
G IFNAR1 interferon alpha and beta receptor subunit 1 ISO (MGI:5619426|PMID:24598055) CACAO PMID:24598055 MGI:5619426 NCBI chr13:196,925,731...196,951,398
Ensembl chr13:196,925,704...196,952,239
JBrowse link
G IRF1 interferon regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:134,776,122...134,783,646
Ensembl chr 2:134,776,134...134,783,646
JBrowse link
G IRF3 interferon regulatory factor 3 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 6:54,701,733...54,706,079
Ensembl chr 6:54,701,668...54,707,151
JBrowse link
G IRF7 interferon regulatory factor 7 IEA Ensembl GO_REF:0000107 NCBI chr 2:372,235...375,572
Ensembl chr 2:371,606...375,381
JBrowse link
G MAVS mitochondrial antiviral signaling protein IEA Ensembl GO_REF:0000107 NCBI chr17:31,850,646...31,869,273
Ensembl chr17:31,850,155...31,869,187
JBrowse link
G POLR3A RNA polymerase III subunit A IEA Ensembl GO_REF:0000107 NCBI chr14:80,410,143...80,471,740
Ensembl chr14:80,410,147...80,471,700
JBrowse link
G POLR3B RNA polymerase III subunit B IEA Ensembl GO_REF:0000107 NCBI chr 5:13,805,157...13,926,733
Ensembl chr 5:13,590,851...13,926,604
JBrowse link
G POLR3C RNA polymerase III subunit C IEA Ensembl GO_REF:0000107 NCBI chr 4:99,480,213...99,494,137
Ensembl chr 4:99,472,354...99,494,142
JBrowse link
G POLR3D RNA polymerase III subunit D IEA Ensembl GO_REF:0000107 NCBI chr14:6,520,962...6,529,526
Ensembl chr14:6,521,035...6,532,182
JBrowse link
G POLR3F RNA polymerase III subunit F IEA Ensembl GO_REF:0000107 NCBI chr17:26,719,339...26,737,635
Ensembl chr17:26,719,514...26,737,626
JBrowse link
G POLR3G RNA polymerase III subunit G ISO (PMID:19609254), (PMID:19631370) UniProtKB PMID:19609254, PMID:19631370 NCBI chr 2:97,646,112...97,688,255 JBrowse link
G PRPS2 phosphoribosyl pyrophosphate synthetase 2 IEA Ensembl GO_REF:0000107 NCBI chr  X:9,505,034...9,531,044
Ensembl chr  X:9,502,748...9,600,301
JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 IEA Ensembl GO_REF:0000107 NCBI chr14:39,202,165...39,292,041
Ensembl chr14:39,202,168...39,292,018
JBrowse link
G PTPN22 protein tyrosine phosphatase non-receptor type 22 IEA Ensembl GO_REF:0000107 NCBI chr 4:106,692,102...106,758,101
Ensembl chr 4:106,686,604...106,758,099
JBrowse link
G RIOK3 RIO kinase 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:108,338,986...108,363,872
Ensembl chr 6:108,338,993...108,363,869
JBrowse link
G RNF135 ring finger protein 135 IEA Ensembl GO_REF:0000107 NCBI chr12:42,793,755...42,808,937
Ensembl chr12:42,790,187...42,808,919
JBrowse link
G TBK1 TANK binding kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:28,880,210...28,929,964
Ensembl chr 5:28,828,568...28,929,964
JBrowse link
G TICAM1 toll like receptor adaptor molecule 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:74,004,566...74,021,100
Ensembl chr 2:74,004,550...74,021,094
JBrowse link
G TLR2 toll like receptor 2 ISO (MGI:4456948|PMID:15356140) BHF-UCL PMID:15356140 MGI:4456948 NCBI chr 8:75,416,257...75,428,370
Ensembl chr 8:75,411,991...75,446,850
JBrowse link
G TLR3 toll like receptor 3 IEA Ensembl GO_REF:0000107 NCBI chr15:46,966,262...46,977,774
Ensembl chr15:46,966,040...47,058,734
JBrowse link
G TLR4 toll like receptor 4 IEA Ensembl GO_REF:0000107 NCBI chr 1:258,044,610...258,054,641
Ensembl chr 1:258,044,610...258,059,004
JBrowse link
G TLR8 toll like receptor 8 IEA Ensembl GO_REF:0000107 NCBI chr  X:9,551,284...9,616,762
Ensembl chr  X:9,549,552...9,616,759
JBrowse link
G TLR9 toll like receptor 9 ISS UniProt GO_REF:0000024 NCBI chr13:34,353,444...34,370,990 JBrowse link
G ZBTB20 zinc finger and BTB domain containing 20 IEA Ensembl GO_REF:0000107 NCBI chr13:144,855,821...145,668,320
Ensembl chr13:144,855,976...145,754,184
JBrowse link
G ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 ISO (PMID:21102435) UniProtKB PMID:21102435 NCBI chr18:10,529,805...10,588,913
Ensembl chr18:10,509,629...10,588,832
JBrowse link
G ZFP64 ZFP64 zinc finger protein ISO (MGI:5619431|PMID:23857586) CACAO PMID:23857586 MGI:5619431 NCBI chr17:53,364,021...53,459,587
Ensembl chr17:53,369,672...53,459,599
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16548
    multicellular organismal process 8039
      cytokine production 714
        type I interferon production 84
          regulation of type I interferon production 84
            regulation of interferon-beta production 53
              negative regulation of interferon-beta production 16
              positive regulation of interferon-beta production 34
Path 2
Term Annotations click to browse term
  biological_process 16548
    metabolic process 10584
      organic substance metabolic process 10031
        macromolecule metabolic process 8714
          gene expression 5332
            cytokine production 714
              regulation of cytokine production 699
                regulation of type I interferon production 84
                  regulation of interferon-beta production 53
                    negative regulation of interferon-beta production 16
                    positive regulation of interferon-beta production 34
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.