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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA-templated transcription, elongation
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Accession:GO:0032784 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
Synonyms:exact_synonym: regulation of DNA-dependent transcription, elongation
 broad_synonym: regulation of RNA elongation;   regulation of transcriptional elongation
 related_synonym: transcription elongation regulator activity


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regulation of DNA-templated transcription, elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link 15 51,818,887 51,834,443 RGD:1624291
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:13792537
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
G Setd5 SET domain containing 5 JBrowse link 4 145,017,549 145,095,247 RGD:1624291
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Zfp326 zinc finger protein 326 JBrowse link 14
14
4,998,530
5,016,764
5,006,759
5,036,663
RGD:1624291
RGD:13792537
negative regulation of DNA-templated transcription, elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:1624291
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:1624291
negative regulation of transcription elongation by RNA polymerase I term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pou4f1 POU class 4 homeobox 1 JBrowse link 15 88,618,255 88,622,712 RGD:1624291
RGD:1600115
negative regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Axin1 axin 1 RGD:1624291
G Eapp E2F-associated phosphoprotein JBrowse link 6 75,561,898 75,589,274 RGD:1624291
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:1624291
G Nelfa negative elongation factor complex member A JBrowse link 14 82,093,837 82,117,913 RGD:1624291
RGD:13792537
G Nelfb negative elongation factor complex member B JBrowse link 3 2,414,448 2,431,148 RGD:13792537
RGD:1624291
G Nelfcd negative elongation factor complex member C/D JBrowse link 3 172,510,840 172,527,118 RGD:13792537
G Nelfe negative elongation factor complex member E JBrowse link 20 4,530,328 4,536,085 RGD:1624291
RGD:13792537
G Recql5 RecQ like helicase 5 JBrowse link 10 104,443,735 104,482,889 RGD:1624291
RGD:1600115
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1624291
RGD:1600115
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:1624291
RGD:1600115
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:1624291
positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alyref Aly/REF export factor JBrowse link 10 109,768,593 109,774,639 RGD:1624291
G Ccnk cyclin K JBrowse link 6 132,090,235 132,113,560 RGD:13792537
G Ccnt1 cyclin T1 JBrowse link 7 140,215,052 140,245,958 RGD:13792537
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:13792537
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:1600115
G Ell3 elongation factor for RNA polymerase II 3 JBrowse link 3 113,400,395 113,405,869 RGD:1624291
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:1600115
RGD:1624291
G LOC103692976 cyclin-T1-like JBrowse link 7 140,149,991 140,172,615 RGD:13792537
G Scaf8 SR-related CTD-associated factor 8 JBrowse link 1 44,017,801 44,120,619 RGD:1600115
RGD:1624291
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:1624291
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:1624291
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
RGD:13792537
RGD:1600115
positive regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07035541.3 RGD:13792537
G AABR07044940.1 RGD:13792537
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:1624291
G Btbd18 BTB domain containing 18 JBrowse link 3 72,060,811 72,070,566 RGD:1624291
RGD:13792537
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9586729
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:13792537
RGD:1600115
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:13792537
G Cdk13 cyclin-dependent kinase 13 JBrowse link 17 49,833,194 49,922,932 RGD:13792537
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
G Dab2 DAB adaptor protein 2 JBrowse link 2 55,747,353 55,768,848 RGD:1624291
G Eapp E2F-associated phosphoprotein JBrowse link 6 75,561,898 75,589,274 RGD:1624291
G Ell elongation factor for RNA polymerase II JBrowse link 16 20,594,129 20,641,441 RGD:1624291
G Eloc elongin C JBrowse link 5 2,042,991 2,059,357 RGD:730008
RGD:13792537
G Gtf2f1 general transcription factor IIF subunit 1 JBrowse link 9 10,032,806 10,042,392 RGD:1600115
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:13792537
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:13792537
G LOC103691088 transcription elongation factor B polypeptide 1 pseudogene JBrowse link 12 19,254,160 19,254,590 RGD:13792537
G LOC103694416 transcription elongation factor B polypeptide 1 pseudogene JBrowse link 20 27,352,167 27,352,667 RGD:13792537
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:2292639
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:13792537
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
RGD:13792537
regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ldb1 LIM domain binding 1 JBrowse link 1 265,772,729 265,798,442 RGD:1624291
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:13792537
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1624291
G Zmynd11 zinc finger, MYND-type containing 11 JBrowse link 17 63,825,616 63,914,740 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      regulation of metabolic process 6886
        regulation of macromolecule metabolic process 6375
          regulation of gene expression 4685
            regulation of transcription, DNA-templated 3182
              regulation of DNA-templated transcription, elongation 55
                negative regulation of DNA-templated transcription, elongation + 15
                positive regulation of DNA-templated transcription, elongation + 37
                regulation of transcription elongation from RNA polymerase I promoter + 1
                regulation of transcription elongation from RNA polymerase II promoter + 37
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA biosynthetic process 3361
                  nucleic acid-templated transcription 3349
                    transcription, DNA-templated 3302
                      DNA-templated transcription, elongation 93
                        regulation of DNA-templated transcription, elongation 55
                          negative regulation of DNA-templated transcription, elongation + 15
                          positive regulation of DNA-templated transcription, elongation + 37
                          regulation of transcription elongation from RNA polymerase I promoter + 1
                          regulation of transcription elongation from RNA polymerase II promoter + 37
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.