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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of DNA-templated transcription, elongation
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Accession:GO:0032786 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
Synonyms:exact_synonym: positive regulation of DNA-dependent transcription, elongation
 broad_synonym: activation of RNA elongation;   positive regulation of transcription elongation;   positive regulation of transcriptional elongation;   stimulation of RNA elongation;   up regulation of RNA elongation;   upregulation of RNA elongation
 related_synonym: positive transcription elongation regulator activity


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positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor ISO (PMID:22144908) RGD PMID:22144908 NCBI chr10:109,768,593...109,774,639
Ensembl chr10:109,770,876...109,774,639
JBrowse link
G Ccnk cyclin K IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:132,090,235...132,113,560
Ensembl chr 6:132,090,218...132,113,557
JBrowse link
G Ccnt1 cyclin T1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,215,052...140,245,958
Ensembl chr 7:140,219,551...140,245,723
JBrowse link
G Ccnt2 cyclin T2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:44,475,959...44,516,892
Ensembl chr13:44,475,970...44,515,739
JBrowse link
G Da2-19 uncharacterized LOC302729 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:48,196,789...48,213,506
Ensembl chr  X:48,196,916...48,213,505
JBrowse link
G Ddx39b DExD-box helicase 39B ISO
ISS
(PMID:22144908)
GO_REF:0000024
RGD
UniProt
PMID:22144908 GO_REF:0000024 NCBI chr20:4,806,103...4,818,600
Ensembl chr20:4,806,108...4,818,568
JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 ISO (PMID:10882741) RGD PMID:10882741 NCBI chr 3:113,400,395...113,405,869
Ensembl chr 3:113,401,734...113,405,829
JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:8,734,028...8,804,610
Ensembl chr16:8,734,035...8,804,610
JBrowse link
G Kat7 lysine acetyltransferase 7 IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:6392952|PMID:31827282)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:31827282 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6392952 NCBI chr10:83,095,067...83,128,342
Ensembl chr10:83,095,068...83,128,297
JBrowse link
G LOC103692976 cyclin-T1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,149,991...140,172,615
Ensembl chr 7:140,154,490...140,172,448
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 ISS
ISO
GO_REF:0000024
(PMID:31104839)
UniProt
RGD
PMID:31104839 GO_REF:0000024 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:75,032,365...75,038,547
Ensembl chr10:75,032,365...75,038,547
JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit ISO (PMID:9450929) RGD PMID:9450929 NCBI chr 1:85,437,780...85,466,854
Ensembl chr 1:85,437,780...85,466,854
JBrowse link
G Thoc1 THO complex 1 ISO (PMID:22144908) RGD PMID:22144908 NCBI chr18:1,142,540...1,177,084
Ensembl chr18:1,142,782...1,176,974
JBrowse link
G Thoc5 THO complex 5 ISO
IBA
ISS
(PMID:22144908)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22144908, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:85,138,219...85,171,729
Ensembl chr14:85,142,279...85,171,726
JBrowse link
positive regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035541.3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:19,254,189...19,254,527 JBrowse link
G AABR07044940.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:27,352,276...27,352,684 JBrowse link
G Brd4 bromodomain containing 4 ISO (PMID:18039861), (PMID:19103749), (PMID:23086925) RGD PMID:18039861, PMID:19103749, PMID:23086925 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Btbd18 BTB domain containing 18 ISO
IBA
(MGI:MGI:5882241|PMID:28292424)
PMID:21873635
RGD PMID:28292424, PMID:21873635 MGI:MGI:5882241, RGD:13792537 NCBI chr 3:72,060,811...72,070,566
Ensembl chr 3:72,063,504...72,069,534
JBrowse link
G Cbx7 chromobox 7 IMP RGD PMID:19706751 RGD:9586729 NCBI chr 7:121,136,067...121,153,503
Ensembl chr 7:121,136,058...121,153,383
JBrowse link
G Cdc73 cell division cycle 73 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Cdk12 cyclin-dependent kinase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,157,186...86,210,657
Ensembl chr10:86,157,608...86,222,707
JBrowse link
G Cdk13 cyclin-dependent kinase 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:49,833,194...49,922,932
Ensembl chr17:49,833,400...49,921,550
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3841145 (MGI:MGI:6284231|PMID:30478225)
GO_REF:0000107
RGD
Ensembl
PMID:30478225 GO_REF:0000107, MGI:MGI:6284231 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dab2 DAB adaptor protein 2 ISO (MGI:MGI:5442512|PMID:15894542) RGD PMID:15894542 MGI:MGI:5442512 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
JBrowse link
G Eapp E2F-associated phosphoprotein ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:75,561,898...75,589,274
Ensembl chr 6:75,567,511...75,589,257
JBrowse link
G Ell elongation factor for RNA polymerase II ISO (PMID:23932780) RGD PMID:23932780 NCBI chr16:20,594,129...20,641,441
Ensembl chr16:20,594,072...20,641,908
JBrowse link
G Eloc elongin C IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8202474, PMID:21873635 RGD:730008, RGD:13792537 NCBI chr 5:2,042,991...2,059,357
Ensembl chr 5:2,042,991...2,059,351
JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:10,032,806...10,042,392
Ensembl chr 9:10,033,011...10,042,418
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158690 (MGI:MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:MGI:5317044 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G LOC103691088 transcription elongation factor B polypeptide 1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,254,160...19,254,590 JBrowse link
G LOC103694416 transcription elongation factor B polypeptide 1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,352,167...27,352,667 JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IMP RGD PMID:18086894 RGD:2292639 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor ISO
IBA
(PMID:17234882)
PMID:21873635
(MGI:MGI:5508611|PMID:17234882)
RGD PMID:17234882, PMID:21873635 MGI:MGI:5508611, RGD:13792537 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      positive regulation of metabolic process 4083
        positive regulation of macromolecule metabolic process 3765
          positive regulation of gene expression 2524
            positive regulation of transcription, DNA-templated 1698
              positive regulation of DNA-templated transcription, elongation 36
                positive regulation of transcription elongation from RNA polymerase I promoter 0
                positive regulation of transcription elongation from RNA polymerase II promoter + 21
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                regulation of RNA metabolic process 3616
                  regulation of RNA biosynthetic process 3343
                    regulation of nucleic acid-templated transcription 3338
                      regulation of transcription, DNA-templated 3289
                        positive regulation of transcription, DNA-templated 1698
                          positive regulation of DNA-templated transcription, elongation 36
                            positive regulation of transcription elongation from RNA polymerase I promoter 0
                            positive regulation of transcription elongation from RNA polymerase II promoter + 21
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.