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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of viral transcription
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Accession:GO:0032897 term browser browse the term
Definition:Any process that stops, prevents, or reduces the frequency, rate or extent of viral transcription.
Synonyms:exact_synonym: down regulation of viral transcription;   downregulation of viral transcription
 narrow_synonym: inhibition of viral transcription


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negative regulation of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hexim1 HEXIM P-TEFb complex subunit 1 ISO (PMID:18249148) RGD PMID:18249148 NCBI chr10:91,200,874...91,202,986
Ensembl chr10:91,200,874...91,202,984
JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 ISO (PMID:20943977) RGD PMID:20943977 NCBI chr 1:213,810,712...213,811,821
Ensembl chr 1:213,810,696...213,811,901
JBrowse link
G Larp7 La ribonucleoprotein 7, transcriptional regulator ISO (PMID:18249148), (PMID:18483487) RGD PMID:18249148, PMID:18483487 NCBI chr 2:231,866,888...231,882,002
Ensembl chr 2:231,867,135...231,881,939
JBrowse link
G Mid2 midline 2 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr  X:112,019,897...112,121,980
Ensembl chr  X:112,020,646...112,121,943
JBrowse link
G Sp100 SP100 nuclear antigen ISO (PMID:16873258) RGD PMID:16873258 NCBI chr 9:92,675,103...92,718,489
Ensembl chr 9:92,681,078...92,717,929
JBrowse link
G Trim11 tripartite motif-containing 11 ISO (PMID:18248090)
(MGI:MGI:5545996|PMID:18248090)
RGD PMID:18248090 MGI:MGI:5545996 NCBI chr10:45,322,199...45,335,030
Ensembl chr10:45,322,248...45,335,030
JBrowse link
G Trim13 tripartite motif-containing 13 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr15:41,897,191...41,936,545
Ensembl chr15:41,927,241...41,935,718
JBrowse link
G Trim14 tripartite motif-containing 14 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr 5:62,128,941...62,154,424
Ensembl chr 5:62,128,941...62,153,786
JBrowse link
G Trim21 tripartite motif-containing 21 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr 1:167,686,148...167,708,735
Ensembl chr 1:167,686,173...167,708,714
JBrowse link
G Trim27 tripartite motif-containing 27 ISO
IBA
(PMID:18248090)
PMID:21873635
(MGI:MGI:5545996|PMID:18248090)
RGD PMID:18248090, PMID:21873635 MGI:MGI:5545996, RGD:13792537 NCBI chr17:45,613,863...45,626,212
Ensembl chr17:45,613,864...45,626,212
JBrowse link
G Trim31 tripartite motif-containing 31 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr20:2,146,245...2,159,875
Ensembl chr20:2,146,257...2,159,631
JBrowse link
G Trim32 tripartite motif-containing 32 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr 5:81,431,554...81,449,023
Ensembl chr 5:81,431,600...81,442,451
JBrowse link
G Trim62 tripartite motif-containing 62 ISO (PMID:18248090) RGD PMID:18248090 NCBI chr 5:147,068,725...147,099,024
Ensembl chr 5:147,069,616...147,095,242
JBrowse link
G Trim8 tripartite motif-containing 8 ISO (MGI:MGI:5545996|PMID:18248090) RGD PMID:18248090 MGI:MGI:5545996 NCBI chr 1:266,255,797...266,270,694
Ensembl chr 1:266,255,797...266,270,694
JBrowse link
G Ubp1 upstream binding protein 1 ISO (PMID:8114710) RGD PMID:8114710 NCBI chr 8:122,196,576...122,241,368
Ensembl chr 8:122,197,027...122,240,357
JBrowse link
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:14679154)
GO_REF:0000024
RGD
UniProt
PMID:14679154 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
modulation by host of viral RNA-binding transcription factor activity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO UniProtKB:P04608 (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
modulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Psmc3 proteasome 26S subunit, ATPase 3 IEA
ISO
GO_REF:0000107
(PMID:2194290), (PMID:8419915)
Ensembl
RGD
PMID:2194290, PMID:8419915 GO_REF:0000107 NCBI chr 3:79,876,938...79,882,319
Ensembl chr 3:79,876,938...79,882,319
JBrowse link
negative regulation by host of viral transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl3 C-C motif chemokine ligand 3 ISO
ISS
(PMID:10841574)
GO_REF:0000024
RGD
UniProt
PMID:10841574 GO_REF:0000024 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 ISO (PMID:10841574) RGD PMID:10841574 NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO
IEA
(PMID:10841574)
GO_REF:0000107
RGD
Ensembl
PMID:10841574 GO_REF:0000107 NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
JBrowse link
G Hdac1 histone deacetylase 1 ISO (PMID:16540471) RGD PMID:16540471 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17005673)
GO_REF:0000024
RGD
UniProt
PMID:17005673 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hmox1 heme oxygenase 1 ISO (PMID:25086213) RGD PMID:25086213 NCBI chr19:14,508,634...14,515,455
Ensembl chr19:14,508,616...14,515,456
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K ISO (PMID:18774950) RGD PMID:18774950 NCBI chr10:63,775,639...63,796,879
Ensembl chr10:63,776,378...63,795,899
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:2833704) RGD PMID:2833704 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Pou2f3 POU class 2 homeobox 3 IEA
ISO
GO_REF:0000107
(PMID:14645924)
Ensembl
RGD
PMID:14645924 GO_REF:0000107 NCBI chr 8:47,412,063...47,495,042
Ensembl chr 8:47,410,220...47,494,982
JBrowse link
G Rest RE1-silencing transcription factor ISO
ISS
(PMID:17555596)
GO_REF:0000024
RGD
UniProt
PMID:17555596 GO_REF:0000024 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:7745706) RGD PMID:7745706 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Tfap4 transcription factor AP-4 ISO (PMID:14645924), (PMID:16540471) RGD PMID:14645924, PMID:16540471 NCBI chr10:11,204,616...11,222,975
Ensembl chr10:11,206,226...11,223,370
JBrowse link
G Zfp639 zinc finger protein 639 ISO
ISS
(PMID:20484494)
GO_REF:0000024
RGD
UniProt
PMID:20484494 GO_REF:0000024 NCBI chr 2:118,906,479...118,917,491
Ensembl chr 2:118,910,587...118,916,563
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    negative regulation of biological process 5686
      negative regulation of viral process 116
        negative regulation of viral transcription 31
          negative regulation by host of viral transcription + 15
Path 2
Term Annotations click to browse term
  biological_process 20028
    interspecies interaction between organisms 1919
      symbiotic process 400
        viral process 334
          viral gene expression 70
            viral transcription 54
              regulation of viral transcription 51
                negative regulation of viral transcription 31
                  negative regulation by host of viral transcription + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.