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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of transcription elongation from RNA polymerase II promoter
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Accession:GO:0032968 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II.
Synonyms:exact_synonym: positive regulation of RNA elongation from RNA polymerase II promoter
 related_synonym: positive regulation of gene-specific transcription elongation from RNA polymerase II promoter
 alt_id: GO:0090040


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positive regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035541.3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:19,254,189...19,254,527 JBrowse link
G AABR07044940.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:27,352,276...27,352,684 JBrowse link
G Brd4 bromodomain containing 4 ISO (PMID:18039861), (PMID:19103749), (PMID:23086925) RGD PMID:18039861, PMID:19103749, PMID:23086925 NCBI chr 7:14,222,101...14,303,055
Ensembl chr 7:14,222,101...14,303,055
JBrowse link
G Btbd18 BTB domain containing 18 ISO
IBA
(MGI:MGI:5882241|PMID:28292424)
PMID:21873635
RGD PMID:28292424, PMID:21873635 MGI:MGI:5882241, RGD:13792537 NCBI chr 3:72,060,811...72,070,566
Ensembl chr 3:72,063,504...72,069,534
JBrowse link
G Cbx7 chromobox 7 IMP RGD PMID:19706751 RGD:9586729 NCBI chr 7:121,136,067...121,153,503
Ensembl chr 7:121,136,058...121,153,383
JBrowse link
G Cdc73 cell division cycle 73 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Cdk12 cyclin-dependent kinase 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:86,157,186...86,210,657
Ensembl chr10:86,157,608...86,222,707
JBrowse link
G Cdk13 cyclin-dependent kinase 13 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:49,833,194...49,922,932
Ensembl chr17:49,833,400...49,921,550
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3841145 (MGI:MGI:6284231|PMID:30478225)
GO_REF:0000107
RGD
Ensembl
PMID:30478225 GO_REF:0000107, MGI:MGI:6284231 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dab2 DAB adaptor protein 2 ISO (MGI:MGI:5442512|PMID:15894542) RGD PMID:15894542 MGI:MGI:5442512 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
JBrowse link
G Eapp E2F-associated phosphoprotein ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:75,561,898...75,589,274
Ensembl chr 6:75,567,511...75,589,257
JBrowse link
G Ell elongation factor for RNA polymerase II ISO (PMID:23932780) RGD PMID:23932780 NCBI chr16:20,594,129...20,641,441
Ensembl chr16:20,594,072...20,641,908
JBrowse link
G Eloc elongin C IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:8202474, PMID:21873635 RGD:730008, RGD:13792537 NCBI chr 5:2,042,991...2,059,357
Ensembl chr 5:2,042,991...2,059,351
JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:10,032,806...10,042,392
Ensembl chr 9:10,033,011...10,042,418
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158690 (MGI:MGI:5317044|PMID:21245044) RGD PMID:21245044 MGI:MGI:5317044 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G LOC103691088 transcription elongation factor B polypeptide 1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:19,254,160...19,254,590 JBrowse link
G LOC103694416 transcription elongation factor B polypeptide 1 pseudogene IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:27,352,167...27,352,667 JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IMP RGD PMID:18086894 RGD:2292639 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor ISO
IBA
(PMID:17234882)
PMID:21873635
(MGI:MGI:5508611|PMID:17234882)
RGD PMID:17234882, PMID:21873635 MGI:MGI:5508611, RGD:13792537 NCBI chr10:65,470,470...65,507,581
Ensembl chr10:65,470,471...65,507,581
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      positive regulation of metabolic process 4057
        positive regulation of macromolecule metabolic process 3759
          positive regulation of gene expression 2497
            positive regulation of transcription, DNA-templated 1696
              positive regulation of DNA-templated transcription, elongation 36
                positive regulation of transcription elongation from RNA polymerase II promoter 21
                  phosphorylation of RNA polymerase II C-terminal domain serine 2 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter 0
                  phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter 0
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                RNA biosynthetic process 3477
                  regulation of RNA biosynthetic process 3341
                    positive regulation of RNA biosynthetic process 1755
                      positive regulation of nucleic acid-templated transcription 1754
                        positive regulation of transcription, DNA-templated 1696
                          positive regulation of transcription by RNA polymerase II 1392
                            positive regulation of transcription elongation from RNA polymerase II promoter 21
                              phosphorylation of RNA polymerase II C-terminal domain serine 2 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter 0
                              phosphorylation of RNA polymerase II C-terminal domain serine 5 residues involved in positive regulation of transcription elongation from RNA polymerase II promoter 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.