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ONTOLOGY REPORT - ANNOTATIONS


Term:protein-DNA complex
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Accession:GO:0032993 term browser browse the term
Definition:A macromolecular complex containing both protein and DNA molecules.
Comment:Note that this term is intended to classify complexes that have DNA as one of the members of the complex, that is, the complex does not exist if DNA is not present. Protein complexes that interact with DNA e.g. transcription factor complexes should not be classified here.


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protein-DNA complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf6b activating transcription factor 6 beta JBrowse link 20 4,414,283 4,422,283 RGD:1624291
G Cdc5l cell division cycle 5-like JBrowse link 9 17,949,764 17,988,514 RGD:10047049
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:1624291
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:1624291
RGD:1600115
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:2316171
RGD:13506263
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:8694156
G Eya1 EYA transcriptional coactivator and phosphatase 1 JBrowse link 5 4,275,728 4,495,525 RGD:1624291
RGD:1600115
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:1624291
G Gata1 GATA binding protein 1 JBrowse link X 15,273,937 15,281,759 RGD:1624291
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:1624291
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:2303817
G Hoxa11 homeobox A11 JBrowse link 4 82,296,888 82,301,419 RGD:1624291
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Jund JunD proto-oncogene, AP-1 transcription factor subunit JBrowse link 16 20,485,028 20,486,707 RGD:10047214
G Jup junction plakoglobin JBrowse link 10 88,280,517 88,307,451 RGD:1624291
G Kcnip3 potassium voltage-gated channel interacting protein 3 JBrowse link 3 120,023,062 120,087,650 RGD:7207199
RGD:1624291
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:1624291
G Lef1 lymphoid enhancer binding factor 1 JBrowse link 2 236,232,115 236,345,061 RGD:1624291
RGD:1600115
G Max MYC associated factor X JBrowse link 6 99,984,260 100,011,460 RGD:1624291
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:5134969
G Myog myogenin JBrowse link 13 51,126,459 51,129,048 RGD:8553747
G Nfe2 nuclear factor, erythroid 2 JBrowse link 7 144,872,739 144,880,092 RGD:1624291
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:1624291
G Nfya nuclear transcription factor Y subunit alpha JBrowse link 9 14,551,752 14,577,002 RGD:1624291
RGD:1600115
G Nfyb nuclear transcription factor Y subunit beta JBrowse link 7 27,081,667 27,097,481 RGD:1624291
G Nfyc nuclear transcription factor Y subunit gamma JBrowse link 5 139,687,442 139,760,154 RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1600115
RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1624291
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:1624291
G Pax2 paired box 2 JBrowse link 1 264,493,579 264,585,073 RGD:1624291
RGD:1600115
G Polr2h RNA polymerase II subunit H JBrowse link 11 83,877,760 83,882,208 RGD:1624291
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Rad52 RAD52 homolog, DNA repair protein JBrowse link 4 152,429,826 152,451,875 RGD:1624291
G Rbpj recombination signal binding protein for immunoglobulin kappa J region JBrowse link 14 59,657,738 59,865,427 RGD:2306426
G Sox12 SRY-box transcription factor 12 JBrowse link 3 147,864,374 147,865,393 RGD:1624291
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:2316171
RGD:13506263
G Sp3 Sp3 transcription factor JBrowse link 3 59,644,579 59,689,011 RGD:13506263
G St18 ST18 C2H2C-type zinc finger transcription factor JBrowse link 5 12,437,617 12,787,223 RGD:1600115
RGD:1624291
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:1624291
RGD:1600115
G Tbx5 T-box transcription factor 5 JBrowse link 12 42,059,688 42,148,226 RGD:1600115
RGD:1624291
G Tcf7l2 transcription factor 7 like 2 JBrowse link 1 276,686,911 276,730,517 RGD:1624291
G Tead4 TEA domain transcription factor 4 JBrowse link 4 161,542,566 161,619,848 RGD:1624291
G Top1 DNA topoisomerase I JBrowse link 3 156,635,688 156,717,686 RGD:1600115
RGD:1624291
G Trex1 three prime repair exonuclease 1 JBrowse link 8 117,796,127 117,797,427 RGD:1624291
G Xrcc5 X-ray repair cross complementing 5 JBrowse link 9 79,659,275 79,748,050 RGD:1624291
G Xrcc6 X-ray repair cross complementing 6 JBrowse link 7 123,259,881 123,280,613 RGD:1624291
G Zbtb17 zinc finger and BTB domain containing 17 JBrowse link 5 159,993,799 160,014,899 RGD:1624291
alpha DNA polymerase:primase complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pola1 DNA polymerase alpha 1, catalytic subunit JBrowse link X 62,382,604 62,698,830 RGD:1580605
RGD:1624291
RGD:13792537
RGD:1600115
RGD:2307013
G Pola2 DNA polymerase alpha 2, accessory subunit JBrowse link 1 221,297,417 221,321,601 RGD:633584
RGD:1624291
RGD:13792537
RGD:1600115
RGD:2307013
G Prim1 DNA primase subunit 1 JBrowse link 7 2,435,524 2,451,169 RGD:13792537
G Prim2 DNA primase subunit 2 JBrowse link 9 38,535,435 38,745,058 RGD:13792537
CST complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctc1 CST telomere replication complex component 1 JBrowse link 10 55,596,172 55,616,873 RGD:1624291
RGD:13792537
G Stn1 STN1 subunit of CST complex JBrowse link 1 267,281,786 267,315,714 RGD:1600115
RGD:1624291
G Ten1 TEN1 subunit of CST complex JBrowse link 10 105,073,077 105,095,094 RGD:1624291
RGD:13792537
delta DNA polymerase complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pold1 DNA polymerase delta 1, catalytic subunit JBrowse link 1 100,538,066 100,554,105 RGD:2307013
RGD:1624291
RGD:1600115
RGD:13792537
RGD:729526
G Pold2 DNA polymerase delta 2, accessory subunit JBrowse link 14 86,111,416 86,117,578 RGD:2307013
RGD:1624291
RGD:13792537
RGD:729526
G Pold3 DNA polymerase delta 3, accessory subunit JBrowse link 1 165,085,142 165,122,385 RGD:2307013
RGD:1624291
RGD:13792537
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:2307013
RGD:13792537
DNA recombinase complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:13792537
G Rag2 recombination activating 2 JBrowse link 3 91,191,837 91,200,134 RGD:13792537
DNA replication factor A complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcas2 BCAS2, pre-mRNA processing factor JBrowse link 2 205,662,633 205,670,514 RGD:1624291
G Cdc5l cell division cycle 5-like JBrowse link 9 17,949,764 17,988,514 RGD:1624291
RGD:1600115
G Ercc5 ERCC excision repair 5, endonuclease JBrowse link 9 50,928,847 50,970,962 RGD:1624291
G Helb DNA helicase B JBrowse link 7 64,860,641 64,888,146 RGD:1624291
G Plrg1 pleiotropic regulator 1 JBrowse link 2 182,040,338 182,056,669 RGD:1624291
RGD:13792537
RGD:1600115
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Pura purine rich element binding protein A JBrowse link 18 29,104,712 29,114,918 RGD:1624291
RGD:1600115
G Purb purine rich element binding protein B JBrowse link 14 86,736,876 86,739,335 RGD:1600115
RGD:1624291
G Rpa1 replication protein A1 JBrowse link 10 62,140,419 62,191,518 RGD:2307012
RGD:13792537
RGD:1624291
RGD:2307013
G Rpa2 replication protein A2 JBrowse link 5 150,957,041 150,967,597 RGD:2307012
RGD:13792537
RGD:1624291
RGD:2307013
G Rpa3 replication protein A3 JBrowse link 4 34,279,320 34,282,351 RGD:2307013
RGD:13792537
RGD:1624291
G Smarcal1 Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 JBrowse link 9 79,943,775 79,990,230 RGD:1600115
RGD:13792537
RGD:1624291
G Stn1 STN1 subunit of CST complex JBrowse link 1 267,281,786 267,315,714 RGD:13792537
G Tonsl tonsoku-like, DNA repair protein JBrowse link 7 117,688,397 117,703,139 RGD:1624291
RGD:1600115
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:1624291
DNA replication preinitiation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc45 cell division cycle 45 JBrowse link 11 86,328,785 86,354,099 RGD:13792537
G Orc3 origin recognition complex, subunit 3 JBrowse link 5 50,019,159 50,075,533 RGD:13792537
GINS complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gins1 GINS complex subunit 1 JBrowse link 3 146,695,366 146,716,787 RGD:13792537
G Gins2 GINS complex subunit 2 JBrowse link 19 54,151,048 54,163,701 RGD:13792537
G Gins4 GINS complex subunit 4 JBrowse link 16 73,584,412 73,596,808 RGD:13792537
nuclear nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpa centromere protein A JBrowse link 6 27,072,259 27,080,863 RGD:1624291
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:12793017
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Irf4 interferon regulatory factor 4 JBrowse link 17 34,886,746 34,905,191 RGD:1624291
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Mphosph8 M-phase phosphoprotein 8 JBrowse link 15 36,918,843 36,946,712 RGD:1624291
RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G Tcf3 transcription factor 3 JBrowse link 7 12,146,642 12,168,400 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:1600115
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291
nuclear pre-replicative complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc45 cell division cycle 45 JBrowse link 11 86,328,785 86,354,099 RGD:13792537
G Orc3 origin recognition complex, subunit 3 JBrowse link 5 50,019,159 50,075,533 RGD:13792537
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
nuclear telomere cap complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD, shelterin complex subunit and telomerase recruitment factor JBrowse link 19 37,665,289 37,668,043 RGD:1624291
RGD:13792537
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
RGD:13792537
G Pot1b protection of telomeres 1B JBrowse link 9 7,845,697 7,902,270 RGD:13792537
G Terf1 telomeric repeat binding factor 1 JBrowse link 5 2,853,455 2,882,731 RGD:1624291
RGD:13792537
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1624291
G Terf2ip TERF2 interacting protein JBrowse link 19 44,231,317 44,238,406 RGD:1624291
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link 15 34,358,697 34,365,085 RGD:1624291
nucleosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07012583.2 RGD:1600115
G AABR07022134.1 RGD:1600115
G AABR07027811.2 RGD:1600115
G AABR07040686.1 RGD:1600115
G AABR07044065.1 RGD:1600115
G AABR07052692.1 RGD:1600115
G AABR07062859.1 RGD:1600115
G AC119603.1 RGD:1600115
G Glyr1 glyoxylate reductase 1 homolog JBrowse link 10 10,725,830 10,759,471 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H2ac1 H2A clustered histone 1 JBrowse link 17 43,422,454 43,422,846 RGD:1600115
G H2ac20 H2A clustered histone 20 JBrowse link 2 198,360,271 198,360,735 RGD:1600115
G H2ac21 H2A clustered histone 21 JBrowse link 2 198,359,754 198,360,146 RGD:1600115
G H2aj H2A.J histone JBrowse link 4 170,766,900 170,767,384 RGD:1600115
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:1600115
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:1600115
G H2az2 H2A.Z variant histone 2 JBrowse link 14 86,687,782 86,706,639 RGD:1600115
G H2bc1 H2B clustered histone 1 JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G H2bc12 H2B clustered histone 12 JBrowse link 17 44,527,421 44,527,801 RGD:1600115
G H2bc9 H2B clustered histone 9 JBrowse link 17 44,519,815 44,520,269 RGD:1600115
G H2bu1 H2B.U histone 1 JBrowse link 10 45,296,638 45,297,385 RGD:1600115
G H3c1 H3 clustered histone 1 JBrowse link 17 43,616,206 43,616,735 RGD:1624291
RGD:1600115
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G H3f3c H3 histone family member 3C JBrowse link 7 94,777,659 94,778,656 RGD:1624291
G H3f4 H3.4 histone JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1624291
G Hist1h2ac histone cluster 1 H2A family member C JBrowse link 17 44,520,484 44,521,142 RGD:1600115
G Hist1h2af histone cluster 1 H2A family member F JBrowse link 17 43,627,237 43,627,629 RGD:1600115
G Hist1h2ah histone cluster 1 H2A family member H JBrowse link 17 43,632,354 43,632,851 RGD:1600115
G Hist1h2ai histone cluster 1, H2ai JBrowse link 17 44,758,412 44,759,675 RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
RGD:1600115
G hist1h2ail2 histone cluster 1, H2ai-like2 JBrowse link 17 44,794,087 44,794,563 RGD:1600115
G Hist1h2ak histone cluster 1, H2ak JBrowse link 17 44,840,990 44,841,382 RGD:1600115
G Hist1h2an histone cluster 1, H2an JBrowse link 17 43,779,174 43,779,775 RGD:1600115
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h2bc histone cluster 1, H2bc JBrowse link 17 44,736,184 44,738,393 RGD:1600115
G Hist1h2bd histone cluster 1 H2B family member D JBrowse link 17 44,833,924 44,834,305 RGD:1600115
G Hist1h2bg histone cluster 1, H2bg JBrowse link 17 43,817,316 43,817,717 RGD:1600115
G Hist1h2bl histone cluster 1 H2B family member l JBrowse link 17 44,748,445 44,748,910 RGD:1600115
G Hist1h2bo histone cluster 1 H2B family member o JBrowse link 17 44,756,557 44,758,170 RGD:1600115
G Hist1h2bq histone cluster 1 H2B family member Q JBrowse link 17 43,679,925 43,689,311 RGD:1600115
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
RGD:1600115
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist1h4m histone cluster 1, H4m RGD:1624291
G Hist2h2aa2 histone cluster 2 H2A family member A2 JBrowse link 2 198,381,678 198,382,247 RGD:1600115
G Hist2h2aa3 histone cluster 2 H2A family member A3 JBrowse link 2 198,388,766 198,389,293 RGD:1600115
G Hist2h2be histone cluster 2 H2B family member E JBrowse link 2 198,360,837 198,363,399 RGD:1600115
G Hist2h3c2 histone cluster 2 H3 family member C2 JBrowse link 2 198,390,024 198,418,075 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Hist3h2a histone cluster 3, H2a JBrowse link 10 45,297,603 45,299,155 RGD:1600115
G Hist3h2ba histone cluster 3, H2ba JBrowse link 10 45,289,741 45,290,370 RGD:1600115
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Hypm huntingtin interacting protein M JBrowse link X 13,989,401 13,989,955 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:1600115
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:1624291
G LOC100363125 rCG42854-like JBrowse link X 13,991,860 13,992,606 RGD:1600115
G LOC100364835 histone cluster 1, H2bd-like JBrowse link 17 43,764,654 43,765,101 RGD:1600115
G LOC100365043 histone cluster 1, H2bd-like JBrowse link 17 43,808,617 43,817,817 RGD:1600115
G LOC100910200 histone H2B type 1-C/E/G-like JBrowse link 17 44,792,982 44,793,896 RGD:1600115
G LOC100910554 histone H2A type 1-like JBrowse link 17 44,738,552 44,739,195 RGD:1600115
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102549061 histone H2B type 1-N-like JBrowse link 17 43,627,872 43,628,518 RGD:1600115
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC103690002 histone H2A.J JBrowse link 4 170,148,955 170,149,479 RGD:1600115
G LOC103690190 histone H2A type 1-E JBrowse link 17 44,747,686 44,748,229 RGD:1600115
G LOC103693372 histone H3.3-like JBrowse link 15 19,575,474 19,577,887 RGD:1600115
G LOC680063 similar to histone 2a RGD:1600115
G LOC680322 similar to Histone H2A type 1 JBrowse link 17 44,527,990 44,528,557 RGD:1600115
G LOC684444 similar to HIStone family member (his-41) JBrowse link 2 29,247,748 29,248,259 RGD:1600115
G LOC684762 similar to CG31613-PA JBrowse link 17 43,776,018 43,776,779 RGD:1624291
G LOC684773 similar to histone 2a JBrowse link 17 43,777,353 43,777,827 RGD:1600115
G LOC684797 similar to Histone H2B 291B JBrowse link 17 43,778,481 43,778,990 RGD:1600115
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:728409
RGD:1600115
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:1600115
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1600115
G Prm3 protamine 3 JBrowse link 10 4,951,557 4,952,071 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G RGD1564447 similar to Zgc:56193 JBrowse link 9 46,951,420 46,951,862 RGD:1600115
G RGD1564548 similar to H3 histone, family 3B JBrowse link 7 109,411,189 109,412,189 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Slf1 SMC5-SMC6 complex localization factor 1 JBrowse link 2 4,095,126 4,195,819 RGD:1624291
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 JBrowse link 6 3,105,443 3,182,977 RGD:1600115
G Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 JBrowse link 6 91,885,292 92,008,059 RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:13792537
RGD:1600115
replisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Donson DNA replication fork stabilization factor DONSON JBrowse link 11 31,834,608 31,847,751 RGD:1624291
shelterin complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acd ACD, shelterin complex subunit and telomerase recruitment factor JBrowse link 19 37,665,289 37,668,043 RGD:1624291
RGD:13792537
G Pot1 protection of telomeres 1 JBrowse link 4 51,888,632 51,946,764 RGD:1624291
G Terb1 telomere repeat binding bouquet formation protein 1 JBrowse link 19 682,013 736,358 RGD:1624291
RGD:13792537
G Terf1 telomeric repeat binding factor 1 JBrowse link 5 2,853,455 2,882,731 RGD:1624291
G Terf2 telomeric repeat binding factor 2 JBrowse link 19 39,271,992 39,301,506 RGD:1624291
RGD:13792537
G Terf2ip TERF2 interacting protein JBrowse link 19 44,231,317 44,238,406 RGD:1624291
RGD:13792537
G Tinf2 TERF1 interacting nuclear factor 2 JBrowse link 15 34,358,697 34,365,085 RGD:1624291
RGD:13792537
transcription preinitiation complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 18 25,037,668 25,068,380 RGD:13792537
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:13792537
RGD:1624291
G Gtf2e1 general transcription factor IIE subunit 1 JBrowse link 11 66,078,786 66,111,394 RGD:1624291
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:1600115
RGD:1624291
G Gtf2h3 general transcription factor IIH subunit 3 JBrowse link 12 37,427,556 37,444,027 RGD:1624291
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19949
    protein-containing complex 5829
      protein-DNA complex 203
        DNA recombinase complex 2
        DNA replication preinitiation complex + 5
        HU-DNA complex 0
        IHF-DNA complex 0
        SeqA-DNA complex 0
        enhanceosome 0
        invertasome 0
        nucleosome + 105
        nucleotide-excision repair, preincision complex 0
        pre-replicative complex + 3
        primosome complex + 0
        protein-DNA ISRE complex 0
        replisome + 24
        retroviral intasome 0
        telomere cap complex + 11
        telomere-telomerase complex 0
        transcription preinitiation complex 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.