ONTOLOGY REPORT - ANNOTATIONS


Term:cellular pigmentation
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Accession:GO:0033059 term browser browse the term
Definition:The deposition or aggregation of coloring matter in a cell.


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cellular pigmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pomc proopiomelanocortin JBrowse link 6 28,382,937 28,388,771 RGD:1600115
RGD:1624291
endosome to melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd27 ankyrin repeat domain 27 JBrowse link 1 91,857,048 91,958,763 RGD:1624291
RGD:1600115
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 JBrowse link 19 41,805,252 41,860,076 RGD:1624291
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link 16 19,288,354 19,303,818 RGD:1624291
RGD:1600115
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link 7 11,838,639 11,873,992 RGD:1624291
RGD:1600115
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 1 80,414,766 80,417,385 RGD:1624291
RGD:1600115
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 17 26,808,193 26,833,257 RGD:1624291
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 3 114,869,478 114,880,218 RGD:1624291
RGD:1600115
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1600115
RGD:1624291
G Rab32 RAB32, member RAS oncogene family JBrowse link 1 4,638,663 4,653,220 RGD:1624291
G Rab38 RAB38, member RAS oncogene family JBrowse link 1 152,072,716 152,153,449 RGD:1624291
RGD:1600115
establishment of melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab17 RAB17, member RAS oncogene family JBrowse link 9 98,118,907 98,131,883 RGD:1624291
G Shroom2 shroom family member 2 JBrowse link X 23,478,869 23,649,424 RGD:1600115
melanosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 JBrowse link 1 261,989,178 262,015,282 RGD:1624291
RGD:1600115
G Hps4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 JBrowse link 12 50,285,239 50,315,893 RGD:1624291
RGD:1600115
G Rab32 RAB32, member RAS oncogene family JBrowse link 1 4,638,663 4,653,220 RGD:1624291
G Rab38 RAB38, member RAS oncogene family JBrowse link 1 152,072,716 152,153,449 RGD:1624291
RGD:1600115
G Trappc6a trafficking protein particle complex 6A JBrowse link 1 80,417,514 80,424,429 RGD:13792537
RGD:1624291
melanosome localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
G Mlph melanophilin JBrowse link 9 98,072,965 98,108,429 RGD:1624291
G Mreg melanoregulin JBrowse link 9 79,490,058 79,559,768 RGD:1624291
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1624291
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1m1 adaptor related protein complex 1 subunit mu 1 JBrowse link 16 19,288,354 19,303,818 RGD:1624291
RGD:1600115
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link 2 24,022,815 24,227,522 RGD:1624291
RGD:1600115
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 1 80,414,766 80,417,385 RGD:1624291
RGD:1600115
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 JBrowse link 14 79,013,808 79,015,108 RGD:1624291
RGD:1600115
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
RGD:1600115
G Kif13a kinesin family member 13A JBrowse link 17 18,151,582 18,335,027 RGD:1624291
RGD:1600115
G Lyst lysosomal trafficking regulator JBrowse link 17 90,323,055 90,522,091 RGD:1624291
G Pmel premelanosome protein JBrowse link 7 3,133,347 3,143,827 RGD:1624291
RGD:13792537
G Shroom2 shroom family member 2 JBrowse link X 23,478,869 23,649,424 RGD:1624291
RGD:1600115
G Tyrp1 tyrosinase-related protein 1 JBrowse link 5 98,387,291 98,406,083 RGD:1624291
RGD:13792537
melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asip agouti signaling protein JBrowse link 3 150,492,010 150,579,870 RGD:1624291
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 JBrowse link 1 80,414,766 80,417,385 RGD:1624291
RGD:1600115
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 JBrowse link 17 26,808,193 26,833,257 RGD:1624291
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 JBrowse link 3 114,869,478 114,880,218 RGD:1624291
RGD:1600115
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1624291
RGD:1600115
G Dctn2 dynactin subunit 2 JBrowse link 7 70,555,953 70,571,433 RGD:1624291
RGD:1600115
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
RGD:1600115
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:2293208
G Mreg melanoregulin JBrowse link 9 79,490,058 79,559,768 RGD:1624291
RGD:13792537
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
RGD:1600115
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:1624291
RGD:13792537
RGD:1600115
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:1624291
RGD:1600115
G Rab17 RAB17, member RAS oncogene family JBrowse link 9 98,118,907 98,131,883 RGD:1624291
RGD:1600115
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:1624291
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
RGD:13792537
G Rab27b RAB27B, member RAS oncogene family JBrowse link 18 68,486,006 68,644,595 RGD:13792537
pigment granule localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
pigment granule maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd63 Cd63 molecule JBrowse link 7 3,320,250 3,335,583 RGD:1624291
RGD:1600115
pigment granule organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
G Lyst lysosomal trafficking regulator JBrowse link 17 90,323,055 90,522,091 RGD:1624291
pigment granule transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo7a myosin VIIA JBrowse link 1 163,001,313 163,071,545 RGD:1624291
RGD:1600115
G Rab27a RAB27A, member RAS oncogene family JBrowse link 8 79,722,334 79,776,228 RGD:1624291
positive regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdh3 cadherin 3 JBrowse link 19 38,668,957 38,719,801 RGD:1624291
RGD:1600115
regulation of melanosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
RGD:1600115
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link 3 29,857,289 29,985,932 RGD:1624291
RGD:1600115
regulation of melanosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpr143 G protein-coupled receptor 143 JBrowse link X 23,668,363 23,693,162 RGD:1624291
RGD:1600115

Term paths to the root
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Term Annotations click to browse term
  biological_process 17896
    pigmentation 97
      cellular pigmentation 41
        cellular pigment accumulation + 10
        pigment granule localization + 22
        pigment granule organization + 18
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.