ONTOLOGY REPORT - ANNOTATIONS


Term:response to vitamin D
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Accession:GO:0033280 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin D stimulus.
Synonyms:exact_synonym: response to calciferol
 narrow_synonym: response to cholecalciferol;   response to ergocalciferol


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response to vitamin D term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:2315563
G Alpl alkaline phosphatase, biomineralization associated JBrowse link 5 156,086,496 156,141,513 RGD:1624291
RGD:1600115
G Bglap bone gamma-carboxyglutamate protein JBrowse link 2 187,741,770 187,748,445 RGD:1624291
G Bmp7 bone morphogenetic protein 7 JBrowse link 3 170,879,972 170,955,820 RGD:2289035
G Cd4 Cd4 molecule JBrowse link 4 157,381,862 157,408,357 RGD:10058969
G Crym crystallin, mu JBrowse link 1 189,944,895 189,960,069 RGD:2303730
G Cxcl10 C-X-C motif chemokine ligand 10 JBrowse link 14 17,210,733 17,212,930 RGD:2311387
G Cyp24a1 cytochrome P450, family 24, subfamily a, polypeptide 1 JBrowse link 3 168,097,484 168,111,920 RGD:1624291
RGD:1600115
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 JBrowse link 7 70,333,150 70,340,006 RGD:2307325
RGD:1624291
G Ggcx gamma-glutamyl carboxylase JBrowse link 4 100,277,345 100,293,097 RGD:11040515
G Il1b interleukin 1 beta JBrowse link 3 121,876,256 121,882,637 RGD:1626651
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:2307025
G Kl Klotho JBrowse link 12 942,974 987,206 RGD:10403078
G Lrp2 LDL receptor related protein 2 JBrowse link 3 55,665,153 55,822,484 RGD:1641848
G Phex phosphate regulating endopeptidase homolog, X-linked JBrowse link X 40,460,047 40,717,982 RGD:11556273
G Pla2g4a phospholipase A2 group IVA JBrowse link 13 67,062,252 67,206,688 RGD:1642467
G Prkcb protein kinase C, beta JBrowse link 1 192,233,569 192,575,339 RGD:1625620
G Ptgs2 prostaglandin-endoperoxide synthase 2 JBrowse link 13 67,351,230 67,356,920 RGD:2300284
G Pth parathyroid hormone JBrowse link 1 178,215,829 178,218,761 RGD:7242796
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:625496
G Slc8a2 solute carrier family 8 member A2 JBrowse link 1 78,029,555 78,054,042 RGD:2316972
G Spp1 secreted phosphoprotein 1 JBrowse link 14 6,673,686 6,679,965 RGD:1624291
RGD:1600115
G Stc1 stanniocalcin 1 JBrowse link 15 50,891,137 50,901,791 RGD:2324701
G Stc2 stanniocalcin 2 JBrowse link 10 16,542,909 16,552,675 RGD:634221
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:2302111
RGD:11073674
G Tgfb2 transforming growth factor, beta 2 JBrowse link 13 105,039,639 105,142,010 RGD:2302111
G Tpcn2 two pore segment channel 2 JBrowse link 1 218,419,182 218,448,902 RGD:9585651
G Trim25 tripartite motif-containing 25 JBrowse link 10 76,343,847 76,362,159 RGD:1300518
G Tyr tyrosinase JBrowse link 1 151,012,598 151,106,802 RGD:8694330
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:6480443
cellular response to vitamin D term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 JBrowse link 11 25,342,119 25,350,938 RGD:9681746
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 JBrowse link 7 41,114,606 41,223,138 RGD:2317730
G Bglap bone gamma-carboxyglutamate protein JBrowse link 2 187,741,770 187,748,445 RGD:2316174
RGD:6483560
G Casr calcium-sensing receptor JBrowse link 11 67,188,204 67,262,261 RGD:7205697
G Fes FES proto-oncogene, tyrosine kinase JBrowse link 1 142,174,648 142,183,884 RGD:1600115
RGD:1624291
G Fgf23 fibroblast growth factor 23 JBrowse link 4 159,622,404 159,630,082 RGD:10044209
G Fzd1 frizzled class receptor 1 JBrowse link 4 26,470,864 26,475,262 RGD:61590
G Fzd2 frizzled class receptor 2 JBrowse link 10 90,550,147 90,552,057 RGD:61590
G Gdap1 ganglioside-induced differentiation-associated-protein 1 JBrowse link 5 1,328,963 1,347,946 RGD:12738378
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:2311387
G Itgb1 integrin subunit beta 1 JBrowse link 19 61,677,512 61,725,537 RGD:2325261
G Ltbp1 latent transforming growth factor beta binding protein 1 JBrowse link 6 21,203,502 21,600,441 RGD:10412059
G Mmp1 matrix metallopeptidase 1 JBrowse link 8 5,703,206 5,723,593 RGD:7207281
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:4891908
G Pdia3 protein disulfide isomerase family A, member 3 JBrowse link 3 113,376,983 113,400,707 RGD:9999173
G Penk proenkephalin JBrowse link 5 17,056,412 17,061,762 RGD:10003035
G Phex phosphate regulating endopeptidase homolog, X-linked JBrowse link X 40,460,047 40,717,982 RGD:11556251
G Ptn pleiotrophin JBrowse link 4 64,239,156 64,330,996 RGD:9831436
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 16 73,372,007 73,410,777 RGD:1600115
RGD:1624291
G Sult2a1 sulfotransferase family 2A member 1 JBrowse link 1 76,558,721 76,614,315 RGD:2317006
G Tnc tenascin C JBrowse link 5 79,789,686 79,874,555 RGD:4889620
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8158092
negative regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kank2 KN motif and ankyrin repeat domains 2 JBrowse link 8 22,792,000 22,821,459 RGD:1624291
RGD:13792537
G Snai2 snail family transcriptional repressor 2 JBrowse link 11 90,404,421 90,406,730 RGD:1624291
positive regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 JBrowse link 7 70,333,150 70,340,006 RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
regulation of vitamin D receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:1624291
RGD:1600115
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Trim24 tripartite motif-containing 24 JBrowse link 4 65,632,278 65,684,746 RGD:1624291
vitamin D receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase JBrowse link 20 8,165,423 8,169,557 RGD:1624291
RGD:1600115
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17941
    response to stimulus 9814
      response to chemical 6147
        response to oxygen-containing compound 2256
          response to vitamin D 56
            cellular response to vitamin D + 29
Path 2
Term Annotations click to browse term
  biological_process 17941
    response to stimulus 9814
      response to external stimulus 2896
        response to extracellular stimulus 775
          response to nutrient levels 745
            response to nutrient 371
              response to vitamin 178
                response to vitamin D 56
                  cellular response to vitamin D + 29
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.