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ONTOLOGY REPORT - ANNOTATIONS


Term:histone H2A ubiquitination
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Accession:GO:0033522 term browser browse the term
Definition:The modification of histone H2A by addition of one or more ubiquitin groups.


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histone H2A ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:26479788) RGD PMID:26479788 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Rnf8 ring finger protein 8 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:3835231|PMID:19015238), (MGI:MGI:4441228|PMID:20153262)
(PMID:18001824), (PMID:18001825)
GO_REF:0000104
UniProt
RGD
PMID:18001824, PMID:18001825, PMID:19015238, PMID:20153262 GO_REF:0000024, GO_REF:0000104, MGI:MGI:3835231, MGI:MGI:4441228 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Ube2a ubiquitin-conjugating enzyme E2A ISO (PMID:11953320) RGD PMID:11953320 NCBI chr  X:123,486,988...123,497,726
Ensembl chr  X:123,486,989...123,497,726
JBrowse link
G Ube2b ubiquitin-conjugating enzyme E2B ISO (PMID:18339854) RGD PMID:18339854 NCBI chr10:37,439,947...37,454,867
Ensembl chr10:37,441,284...37,455,022
JBrowse link
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 ISO
IBA
(MGI:MGI:4431162|PMID:20080676)
PMID:21873635
RGD PMID:20080676, PMID:21873635 MGI:MGI:4431162, RGD:13792537 NCBI chr 9:16,003,058...16,080,152
Ensembl chr 9:16,003,058...16,080,152
JBrowse link
histone H2A K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19203578), (PMID:19203579), (PMID:19500350), (PMID:20550933)
UniProt
Ensembl
RGD
PMID:19203578, PMID:19203579, PMID:19500350, PMID:20550933 GO_REF:0000024, GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
G Rnf8 ring finger protein 8 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:20550933), (PMID:22980979)
UniProt
RGD
PMID:20550933, PMID:22980979, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
histone H2A monoubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 co-repressor ISO (PMID:16943429) RGD PMID:16943429 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
G Cul4b cullin 4B ISO (PMID:22334663) RGD PMID:22334663 NCBI chr  X:124,831,391...124,870,329
Ensembl chr  X:124,832,628...124,870,329
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 IEA
ISO
GO_REF:0000107
(PMID:22334663)
Ensembl
RGD
PMID:22334663 GO_REF:0000107 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Ddb2 damage specific DNA binding protein 2 ISO (PMID:22334663) RGD PMID:22334663 NCBI chr 3:80,030,437...80,052,984
Ensembl chr 3:80,030,437...80,052,953
JBrowse link
G Kdm2b lysine demethylase 2B ISO (PMID:16943429) RGD PMID:16943429 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO (PMID:16943429) RGD PMID:16943429 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Ring1 ring finger protein 1 ISO
IEA
IBA
(PMID:16943429)
GO_REF:0000002
PMID:21873635
RGD
InterPro
PMID:16943429, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr20:3,812,287...3,815,834
Ensembl chr20:3,812,287...3,815,834
JBrowse link
G Rnf168 ring finger protein 168 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22980979), (PMID:23760478)
UniProt
Ensembl
RGD
PMID:22980979, PMID:23760478 GO_REF:0000024, GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
G Rnf2 ring finger protein 2 ISO
IBA
(PMID:16943429)
PMID:21873635
RGD PMID:16943429, PMID:21873635 RGD:13792537 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Rybp RING1 and YY1 binding protein ISO (PMID:16943429) RGD PMID:16943429 NCBI chr 4:132,689,623...132,740,823
Ensembl chr 4:132,689,531...132,740,938
JBrowse link
G Skp1 S-phase kinase-associated protein 1 ISO
IEA
(PMID:16943429)
GO_REF:0000107
RGD
Ensembl
PMID:16943429 GO_REF:0000107 NCBI chr10:37,594,578...37,609,498
Ensembl chr10:37,594,578...37,609,498
JBrowse link
G Trim37 tripartite motif-containing 37 ISO (PMID:25470042)
(MGI:MGI:5613824|PMID:25470042)
RGD PMID:25470042 MGI:MGI:5613824 NCBI chr10:74,436,165...74,568,636
Ensembl chr10:74,436,208...74,568,493
JBrowse link
histone H2A-K119 monoubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO
IBA
(PMID:26151332)
PMID:21873635
RGD PMID:26151332, PMID:21873635 RGD:13792537 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G LOC103692167 polycomb group RING finger protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:114,776,680...114,779,447
Ensembl chr 4:114,776,797...114,779,446
JBrowse link
G Pcgf1 polycomb group ring finger 1 ISO
IBA
ISS
(PMID:26151332)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26151332, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:113,911,129...113,913,718
Ensembl chr 4:113,910,685...113,913,687
JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO
IBA
(PMID:26151332)
PMID:21873635
RGD PMID:26151332, PMID:21873635 RGD:13792537 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902
JBrowse link
G Pcgf3 polycomb group ring finger 3 ISO
IBA
(MGI:MGI:5908473|PMID:28596365)
PMID:21873635
RGD PMID:28596365, PMID:21873635 MGI:MGI:5908473, RGD:13792537 NCBI chr14:2,247,805...2,297,155
Ensembl chr14:2,247,808...2,297,155
JBrowse link
G Pcgf5 polycomb group ring finger 5 ISO
IBA
(MGI:MGI:5908473|PMID:28596365)
PMID:21873635
RGD PMID:28596365, PMID:21873635 MGI:MGI:5908473, RGD:13792537 NCBI chr 1:254,974,688...255,090,925
Ensembl chr 1:254,974,789...255,086,207
JBrowse link
G Pcgf6 polycomb group ring finger 6 ISO
IBA
ISS
(PMID:26151332)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26151332, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:266,811,418...266,831,022
Ensembl chr 1:266,811,420...266,830,976
JBrowse link
G RGD1562871 similar to BMI1-like protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:79,546,624...79,547,767
Ensembl chr  X:79,546,624...79,547,767
JBrowse link
G Rnf2 ring finger protein 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5527017|PMID:24034696)
Ensembl
UniProt
RGD
PMID:24034696 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5527017 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Scml2 Scm polycomb group protein like 2 ISO (MGI:MGI:5645866|PMID:25634095) RGD PMID:25634095 MGI:MGI:5645866 NCBI chr  X:35,305,235...35,431,271
Ensembl chr  X:35,305,236...35,431,164
JBrowse link
G Trim37 tripartite motif-containing 37 ISO
IBA
(PMID:25470042)
PMID:21873635
(MGI:MGI:5613824|PMID:25470042)
RGD PMID:25470042, PMID:21873635 MGI:MGI:5613824, RGD:13792537 NCBI chr10:74,436,165...74,568,636
Ensembl chr10:74,436,208...74,568,493
JBrowse link
histone H2A-K13 ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 ISO
IEA
ISS
(PMID:22980979)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22980979 GO_REF:0000024, GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
histone H2A-K15 ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rnf168 ring finger protein 168 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:22980979), (PMID:23760478)
UniProt
Ensembl
RGD
PMID:22980979, PMID:23760478 GO_REF:0000024, GO_REF:0000107 NCBI chr11:71,721,242...71,743,421
Ensembl chr11:71,721,250...71,743,421
JBrowse link
negative regulation of histone H2A K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO
ISS
IBA
(PMID:20725033)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:20725033, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:222,451,674...222,459,952
Ensembl chr 1:222,451,674...222,459,952
JBrowse link
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:127,282,445...127,301,086
Ensembl chr 6:127,282,466...127,301,083
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:22884692)
Ensembl
UniProt
RGD
PMID:22884692, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 9:92,305,059...92,435,388
Ensembl chr 9:92,305,051...92,435,365
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:22884692)
Ensembl
UniProt
RGD
PMID:22884692, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 7:76,789,110...76,835,517
NCBI chr 7:76,839,661...76,907,441
Ensembl chr 7:76,789,531...76,853,840
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          chromatin organization 847
            covalent chromatin modification 513
              histone modification 498
                histone ubiquitination 52
                  histone H2A ubiquitination 29
                    histone H2A K63-linked ubiquitination + 6
                    histone H2A monoubiquitination + 20
                    histone H2A-K13 ubiquitination 1
                    histone H2A-K15 ubiquitination 1
Path 2
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      organic substance metabolic process 11639
        organonitrogen compound metabolic process 7135
          protein metabolic process 6217
            cellular protein metabolic process 5555
              cellular protein modification process 3939
                protein modification by small protein conjugation or removal 954
                  protein modification by small protein conjugation 818
                    protein ubiquitination 769
                      histone ubiquitination 52
                        histone H2A ubiquitination 29
                          histone H2A K63-linked ubiquitination + 6
                          histone H2A monoubiquitination + 20
                          histone H2A-K13 ubiquitination 1
                          histone H2A-K15 ubiquitination 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.