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ONTOLOGY REPORT - ANNOTATIONS


Term:histone H2B ubiquitination
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Accession:GO:0033523 term browser browse the term
Definition:The modification of histone H2B by addition of ubiquitin groups.


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histone H2B ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 ISO
IEA
(PMID:16307923)
GO_REF:0000107
RGD
Ensembl
PMID:16307923 GO_REF:0000107 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:26479788) RGD PMID:26479788 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Rnf20 ring finger protein 20 ISO (PMID:16307923), (PMID:16337599) RGD PMID:16307923, PMID:16337599 NCBI chr 5:64,892,996...64,920,397
Ensembl chr 5:64,892,802...64,920,390
JBrowse link
G Rnf40 ring finger protein 40 ISO (PMID:16307923) RGD PMID:16307923 NCBI chr 1:199,037,472...199,052,823
Ensembl chr 1:199,037,544...199,052,172
JBrowse link
G Rnf8 ring finger protein 8 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:3835231|PMID:19015238), (MGI:MGI:4441228|PMID:20153262)
GO_REF:0000104
UniProt
RGD
PMID:19015238, PMID:20153262 GO_REF:0000024, GO_REF:0000104, MGI:MGI:3835231, MGI:MGI:4441228 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Ube2e1 ubiquitin-conjugating enzyme E2E 1 ISO
IBA
(PMID:16307923)
PMID:21873635
RGD PMID:16307923, PMID:21873635 RGD:13792537 NCBI chr15:8,124,869...8,178,252
Ensembl chr15:8,125,526...8,177,781
JBrowse link
histone H2B conserved C-terminal lysine ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wac WW domain containing adaptor with coiled-coil ISO (PMID:21329877) RGD PMID:21329877 NCBI chr17:60,887,606...60,946,630
Ensembl chr17:60,888,017...60,946,426
JBrowse link
positive regulation of histone H2B ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 ISO (PMID:19575011)
(MGI:MGI:5616315|PMID:19575011)
RGD PMID:19575011 MGI:MGI:5616315 NCBI chr 3:11,742,269...11,747,117
Ensembl chr 3:11,742,266...11,747,113
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Rnf20 ring finger protein 20 ISO (PMID:19575011) RGD PMID:19575011 NCBI chr 5:64,892,996...64,920,397
Ensembl chr 5:64,892,802...64,920,390
JBrowse link
G Rnf40 ring finger protein 40 ISO (PMID:19575011)
(MGI:MGI:5616315|PMID:19575011)
RGD PMID:19575011 MGI:MGI:5616315 NCBI chr 1:199,037,472...199,052,823
Ensembl chr 1:199,037,544...199,052,172
JBrowse link
regulation of histone H2B conserved C-terminal lysine ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr70 WD repeat domain 70 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:56,944,462...57,196,522
Ensembl chr 2:56,944,460...57,196,568
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          chromatin organization 847
            covalent chromatin modification 513
              histone modification 498
                histone ubiquitination 52
                  histone H2B ubiquitination 12
                    histone H2B conserved C-terminal lysine ubiquitination + 2
                    negative regulation of histone H2B ubiquitination + 0
                    positive regulation of histone H2B ubiquitination + 4
                    regulation of histone H2B ubiquitination + 5
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        organonitrogen compound metabolic process 7132
          protein metabolic process 6214
            cellular protein metabolic process 5552
              cellular protein modification process 3937
                protein modification by small protein conjugation or removal 953
                  protein modification by small protein conjugation 817
                    protein ubiquitination 768
                      histone ubiquitination 52
                        histone H2B ubiquitination 12
                          histone H2B conserved C-terminal lysine ubiquitination + 2
                          negative regulation of histone H2B ubiquitination + 0
                          positive regulation of histone H2B ubiquitination + 4
                          regulation of histone H2B ubiquitination + 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.