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ONTOLOGY REPORT - ANNOTATIONS


Term:host intracellular organelle
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Accession:GO:0033647 term browser browse the term
Definition:Organized structure of distinctive morphology and function, occurring within the host cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.


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host cell mitochondrial intermembrane space term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SCO1 synthesis of cytochrome C oxidase 1 JBrowse link 5 34,957,358 34,971,684 RGD:13508589
host cell nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BACH1 BTB domain and CNC homolog 1 JBrowse link 31 24,269,310 24,310,369 RGD:13508589
G BACH2 BTB domain and CNC homolog 2 JBrowse link 12 49,101,621 49,375,415 RGD:13508589
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 10 834,018 868,817 RGD:13508589
G BAZ2B bromodomain adjacent to zinc finger domain 2B JBrowse link 36 5,083,273 5,306,317 RGD:13508589
G CCNA1 cyclin A1 JBrowse link 25 4,189,457 4,198,170 RGD:13508589
G CCNA2 cyclin A2 JBrowse link 19 18,317,866 18,324,592 RGD:13508589
G CCNB1 cyclin B1 JBrowse link 2 54,256,957 54,264,749 RGD:13508589
G CCNB2 cyclin B2 JBrowse link 30 24,040,859 24,063,084 RGD:13508589
G CCNB3 cyclin B3 JBrowse link X 42,951,030 43,041,616 RGD:13508589
G CCNC cyclin C JBrowse link 12 57,738,576 57,760,918 RGD:13508589
G CCND1 cyclin D1 JBrowse link 18 48,501,905 48,509,684 RGD:13508589
G CCND2 cyclin D2 JBrowse link 27 40,563,306 40,593,362 RGD:13508589
G CCND3 cyclin D3 JBrowse link 12 10,593,786 10,688,304 RGD:13508589
G CCNE1 cyclin E1 JBrowse link 1 121,688,622 121,697,533 RGD:13508589
G CCNE2 cyclin E2 JBrowse link 29 39,534,872 39,551,141 RGD:13508589
G CCNF cyclin F JBrowse link 6 38,572,883 38,592,465 RGD:13508589
G CCNH cyclin H JBrowse link 3 21,046,477 21,067,305 RGD:13508589
G CCNJ cyclin J JBrowse link 28 9,491,683 9,511,585 RGD:13508589
G CCNJL cyclin J like JBrowse link 4 50,409,014 50,464,189 RGD:13508589
G CCNK cyclin K JBrowse link 8 67,910,772 67,927,216 RGD:13508589
G CCNL1 cyclin L1 RGD:13508589
G CCNL2 cyclin L2 JBrowse link 5 56,542,358 56,550,701 RGD:13508589
G CCNO cyclin O JBrowse link 2 42,587,293 42,589,865 RGD:13508589
G CCNP cyclin P JBrowse link 1 113,412,012 113,417,046 RGD:13508589
G CCNQ cyclin Q JBrowse link X 121,409,169 121,418,666 RGD:13508589
G CCNT1 cyclin T1 JBrowse link 27 5,788,426 5,817,518 RGD:13508589
G CCNT2 cyclin T2 JBrowse link 19 37,743,442 37,787,875 RGD:13508589
G CENPB centromere protein B JBrowse link 24 17,569,440 17,572,311 RGD:13508589
G CFAP53 cilia and flagella associated protein 53 JBrowse link 7 78,612,226 78,649,518 RGD:13508589
G CLCF1 cardiotrophin like cytokine factor 1 JBrowse link 18 50,084,120 50,093,825 RGD:13508589
G CNOT2 CCR4-NOT transcription complex subunit 2 JBrowse link 10 12,057,269 12,174,405 RGD:13508589
G CNOT3 CCR4-NOT transcription complex subunit 3 JBrowse link 1 103,057,392 103,070,612 RGD:13508589
G EHF ETS homologous factor JBrowse link 18 33,191,269 33,233,318 RGD:13508589
G ELF3 E74 like ETS transcription factor 3 JBrowse link 7 959,408 965,533 RGD:13508589
G ELF5 E74 like ETS transcription factor 5 JBrowse link 18 33,342,962 33,376,012 RGD:13508589
G ETS1 ETS proto-oncogene 1, transcription factor JBrowse link 5 6,059,023 6,189,516 RGD:13508589
G ETS2 ETS proto-oncogene 2, transcription factor JBrowse link 31 33,846,821 33,861,394 RGD:13508589
G ETV6 ETS variant transcription factor 6 JBrowse link 27 34,351,206 34,587,060 RGD:13508589
G ETV7 ETS variant transcription factor 7 JBrowse link 12 5,477,632 5,500,402 RGD:13508589
G FAM120A family with sequence similarity 120A JBrowse link 1 98,264,680 98,336,761 RGD:13508589
G FAM120B family with sequence similarity 120B JBrowse link 12 72,292,419 72,377,839 RGD:13508589
G FAM120C family with sequence similarity 120C JBrowse link X 45,780,015 45,943,571 RGD:13508589
G FLI1 Fli-1 proto-oncogene, ETS transcription factor JBrowse link 5 5,841,533 5,968,329 RGD:13508589
G GABPA GA binding protein transcription factor subunit alpha JBrowse link 31 21,216,931 21,251,658 RGD:13508589
G H1-0 H1.0 linker histone JBrowse link 10 26,827,748 26,829,909 RGD:13508589
G H1-2 H1.2 linker histone, cluster member JBrowse link 35 24,009,304 24,011,602 RGD:13508589
G H1-4 H1.4 linker histone, cluster member RGD:13508589
G H1-5 H1.5 linker histone, cluster member JBrowse link 35 25,045,883 25,046,775 RGD:13508589
G H1-6 H1.6 linker histone, cluster member JBrowse link 35 24,046,374 24,065,892 RGD:13508589
G H1-8 H1.8 linker histone JBrowse link 20 5,614,822 5,619,136 RGD:13508589
G H4-16 H4 histone 16 JBrowse link 27 31,839,899 31,840,463 RGD:13508589
G H4C11 H4 clustered histone 11 JBrowse link 35 25,009,935 25,012,013 RGD:13508589
G H4C7 H4 clustered histone 7 RGD:13508589
G H4C8 H4 clustered histone 8 JBrowse link 35 24,174,401 24,194,848 RGD:13508589
G HP1BP3 heterochromatin protein 1 binding protein 3 JBrowse link 2 78,164,239 78,203,032 RGD:13508589
G HSF1 heat shock transcription factor 1 JBrowse link 13 37,724,741 37,745,259 RGD:13508589
G HSF2 heat shock transcription factor 2 JBrowse link 1 61,777,297 61,809,208 RGD:13508589
G HSF4 heat shock transcription factor 4 JBrowse link 5 82,190,996 82,201,224 RGD:13508589
G HSF5 heat shock transcription factor 5 JBrowse link 9 33,064,533 33,109,844 RGD:13508589
G KAT6A lysine acetyltransferase 6A JBrowse link 16 23,604,629 23,717,047 RGD:13508589
G KAT6B lysine acetyltransferase 6B JBrowse link 4 25,131,580 25,303,355 RGD:13508589
G KPNA1 karyopherin subunit alpha 1 JBrowse link 33 25,561,335 25,631,713 RGD:13508589
G KPNA2 karyopherin subunit alpha 2 JBrowse link 9 12,546,912 12,556,163 RGD:13508589
G KPNA3 karyopherin subunit alpha 3 JBrowse link 22 2,064,733 2,110,524 RGD:13508589
G KPNA4 karyopherin subunit alpha 4 JBrowse link 34 26,549,071 26,614,537 RGD:13508589
G KPNA5 karyopherin subunit alpha 5 JBrowse link 1 57,112,204 57,154,865 RGD:13508589
G KPNA6 karyopherin subunit alpha 6 JBrowse link 2 69,025,409 69,078,635 RGD:13508589
G KPNA7 karyopherin subunit alpha 7 JBrowse link 6 10,344,320 10,363,755 RGD:13508589
G LOC100856267 heat shock transcription factor, X-linked member 3-like JBrowse link X 117,559,953 117,561,723 RGD:13508589
G LOC106558236 histone H4 JBrowse link 35 24,555,412 24,556,402 RGD:13508589
G LOC111094819 heat shock transcription factor, X-linked-like JBrowse link X 117,708,728 117,711,146 RGD:13508589
G LOC485338 G2/mitotic-specific cyclin-B1 pseudogene JBrowse link 21 29,997,396 29,998,918 RGD:13508589
G LOC492024 nuclear RNA export factor 2-like JBrowse link X 75,689,761 75,717,537 RGD:13508589
G LOC492026 nuclear RNA export factor 2 JBrowse link X 76,015,042 76,027,781 RGD:13508589
G LOC492209 heat shock transcription factor, X-linked member 3 JBrowse link X 118,088,108 118,089,878 RGD:13508589
G LOC608024 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) pseudogene JBrowse link 22 38,783,764 38,785,635 RGD:13508589
G LOC608987 cyclin-J-like protein JBrowse link 32 9,993,453 9,995,842 RGD:13508589
G LOC609814 nuclear RNA export factor 2 JBrowse link X 76,039,635 76,052,337 RGD:13508589
G LOC612762 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) pseudogene RGD:13508589
G MAF MAF bZIP transcription factor JBrowse link 5 71,965,291 71,982,903 RGD:13508589
G MAFA MAF bZIP transcription factor A JBrowse link 13 37,122,653 37,123,895 RGD:13508589
G MAFB MAF bZIP transcription factor B JBrowse link 24 28,769,904 28,772,519 RGD:13508589
G MAFF MAF bZIP transcription factor F JBrowse link 10 26,475,478 26,486,109 RGD:13508589
G MAFG MAF bZIP transcription factor G JBrowse link 9 368,102 373,825 RGD:13508589
G MAFK MAF bZIP transcription factor K JBrowse link 6 15,421,918 15,426,650 RGD:13508589
G MBD1 methyl-CpG binding domain protein 1 JBrowse link 7 78,597,688 78,611,303 RGD:13508589
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 1 21,232,260 21,283,687 RGD:13508589
G MBD3 methyl-CpG binding domain protein 3 JBrowse link 20 57,296,713 57,312,988 RGD:13508589
G MBD4 methyl-CpG binding domain 4, DNA glycosylase JBrowse link 20 5,716,162 5,725,068 RGD:13508589
G MBD5 methyl-CpG binding domain protein 5 JBrowse link 19 49,815,388 50,250,071 RGD:13508589
G MBD6 methyl-CpG binding domain protein 6 JBrowse link 10 1,611,462 1,620,546 RGD:13508589
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:13508589
G MRTFA myocardin related transcription factor A JBrowse link 10 24,561,161 24,759,586 RGD:13508589
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 13 25,200,772 25,205,309 RGD:13508589
G MYCL MYCL proto-oncogene, bHLH transcription factor JBrowse link 15 2,975,757 3,019,313 RGD:13508589
G MYCN MYCN proto-oncogene, bHLH transcription factor JBrowse link 17 11,720,857 11,724,308 RGD:13508589
G NFE2 nuclear factor, erythroid 2 JBrowse link 27 1,003,551 1,010,514 RGD:13508589
G NFE2L1 nuclear factor, erythroid 2 like 1 JBrowse link 9 24,344,697 24,356,918 RGD:13508589
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 36 20,989,205 21,087,044 RGD:13508589
G NFE2L3 nuclear factor, erythroid 2 like 3 JBrowse link 14 39,456,765 39,495,613 RGD:13508589
G NFKB1 nuclear factor kappa B subunit 1 JBrowse link 32 23,948,598 24,040,704 RGD:13508589
G NFKB2 nuclear factor kappa B subunit 2 JBrowse link 28 14,902,212 14,910,437 RGD:13508589
G NR1H4 nuclear receptor subfamily 1 group H member 4 JBrowse link 15 39,497,313 39,608,120 RGD:13508589
G NR1I3 nuclear receptor subfamily 1 group I member 3 JBrowse link 38 21,252,874 21,257,951 RGD:13508589
G NRL neural retina leucine zipper JBrowse link 8 4,086,487 4,090,373 RGD:13508589
G NXF1 nuclear RNA export factor 1 JBrowse link 18 53,884,512 53,895,168 RGD:13508589
G NXF3 nuclear RNA export factor 3 RGD:13508589
G PHF8 PHD finger protein 8 JBrowse link X 45,635,204 45,741,850 RGD:13508589
G POLR1A RNA polymerase I subunit A JBrowse link 17 38,990,379 39,070,910 RGD:13508589
G POLR1E RNA polymerase I subunit E JBrowse link 11 53,793,324 53,808,725 RGD:13508589
G POLR2E RNA polymerase II, I and III subunit E JBrowse link 20 57,649,836 57,653,661 RGD:13508589
G RAD1 RAD1 checkpoint DNA exonuclease JBrowse link 4 73,372,391 73,393,148 RGD:13508589
G RAD17 RAD17 checkpoint clamp loader component JBrowse link 2 54,407,184 54,437,676 RGD:13508589
G RAD23A RAD23 homolog A, nucleotide excision repair protein JBrowse link 20 49,244,330 49,250,058 RGD:13508589
G RAD23B RAD23 homolog B, nucleotide excision repair protein JBrowse link 11 62,732,989 62,778,957 RGD:13508589
G REL REL proto-oncogene, NF-kB subunit JBrowse link 10 60,990,264 61,030,162 RGD:13508589
G RELA RELA proto-oncogene, NF-kB subunit JBrowse link 18 51,550,003 51,558,861 RGD:13508589
G RELB RELB proto-oncogene, NF-kB subunit JBrowse link 1 110,436,677 110,466,709 RGD:13508589
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 12 47,944,600 48,306,789 RGD:13508589
G RNMT RNA guanine-7 methyltransferase JBrowse link 1 24,465,634 24,499,526 RGD:13508589
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 17 60,035,819 60,069,721 RGD:13508589
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 22 2,263,990 2,319,249 RGD:13508589
G SHPRH SNF2 histone linker PHD RING helicase JBrowse link 1 37,076,318 37,170,664 RGD:13508589
G SIAH1 siah E3 ubiquitin protein ligase 1 JBrowse link 2 66,630,795 66,709,497 RGD:13508589
G SIAH2 siah E3 ubiquitin protein ligase 2 JBrowse link 23 45,366,343 45,418,960 RGD:13508589
G SIAH3 siah E3 ubiquitin protein ligase family member 3 JBrowse link 22 5,320,083 5,390,389 RGD:13508589
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 12 3,814,806 3,831,724 RGD:13508589
G THRA thyroid hormone receptor alpha JBrowse link 9 22,469,466 22,493,445 RGD:13508589
G THRB thyroid hormone receptor beta JBrowse link 23 19,278,650 19,648,547 RGD:13508589
G WNK3 WNK lysine deficient protein kinase 3 JBrowse link X 45,951,049 46,111,643 RGD:13508589
G XPA XPA, DNA damage recognition and repair factor JBrowse link 11 54,976,978 54,996,140 RGD:13508589
G ZC3HC1 zinc finger C3HC-type containing 1 JBrowse link 14 6,831,017 6,852,852 RGD:13508589
host cell PML body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CNOT7 CCR4-NOT transcription complex subunit 7 JBrowse link 16 40,554,214 40,571,841 RGD:13508589
host cell viral assembly compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BICD1 BICD cargo adaptor 1 JBrowse link 27 16,478,323 16,618,429 RGD:13508589
viral integration complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TOP2A DNA topoisomerase II alpha JBrowse link 9 22,207,501 22,237,497 RGD:13508589
G TOP2B DNA topoisomerase II beta JBrowse link 23 18,159,521 18,206,413 RGD:9068941
viral replication complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FMR1 FMRP translational regulator 1 JBrowse link X 116,249,079 116,287,008 RGD:13508589
G MOV10 Mov10 RISC complex RNA helicase JBrowse link 17 62,872,607 62,896,208 RGD:9068941
G PI4KA phosphatidylinositol 4-kinase alpha JBrowse link 26 30,630,693 30,749,158 RGD:13508589
G SHFL shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 20 50,961,557 50,966,261 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16225
    cellular anatomical entity 16057
      host cellular component 149
        host cell part 148
          host intracellular part 146
            host intracellular organelle 141
              host chromosome 0
              host cytoskeleton + 0
              host intracellular membrane-bounded organelle + 141
Path 2
Term Annotations click to browse term
  cellular_component 16225
    cellular anatomical entity 16057
      host cellular component 149
        host cell 149
          host cell part 148
            host intracellular region 146
              host intracellular part 146
                host intracellular organelle 141
                  host chromosome 0
                  host cytoskeleton + 0
                  host intracellular membrane-bounded organelle + 141
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.