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ONTOLOGY REPORT - ANNOTATIONS


Term:host intracellular membrane-bounded organelle
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Accession:GO:0033648 term browser browse the term
Definition:Organized structure of distinctive morphology and function, as found in host cells, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms:exact_synonym: host intracellular membrane-enclosed organelle


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host cell mitochondrial intermembrane space term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sco1 synthesis of cytochrome C oxidase 1 JBrowse link 10 53,595,854 53,608,437 RGD:1624291
host cell nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC126482.1 RGD:1600115
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:1600115
G Baz2a bromodomain adjacent to zinc finger domain, 2A JBrowse link 7 2,518,267 2,548,840 RGD:1600115
G Baz2b bromodomain adjacent to zinc finger domain, 2B JBrowse link 3 45,968,845 46,286,915 RGD:1600115
G Bmyc brain expressed myelocytomatosis oncogene JBrowse link 3 2,916,662 2,917,421 RGD:1600115
G Ccna1 cyclin A1 JBrowse link 2 144,456,689 144,503,570 RGD:1600115
G Ccna2 cyclin A2 JBrowse link 2 123,274,727 123,282,266 RGD:1600115
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1600115
G Ccnb3 cyclin B3 JBrowse link X 16,300,752 16,402,206 RGD:1600115
G Ccnc cyclin C JBrowse link 5 35,865,598 35,883,732 RGD:1600115
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:1600115
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:1600115
G Ccnd3 cyclin D3 JBrowse link 9 15,404,816 15,410,905 RGD:1600115
G Ccne1 cyclin E1 JBrowse link 1 94,485,830 94,495,112 RGD:1600115
G Ccne2 cyclin E2 JBrowse link 5 24,434,077 24,446,406 RGD:1600115
G Ccnf cyclin F JBrowse link 10 13,594,687 13,619,935 RGD:1600115
G Ccnh cyclin H JBrowse link 2 13,593,100 13,613,910 RGD:1600115
G Ccnj cyclin J JBrowse link 1 259,926,537 259,944,275 RGD:1600115
G Ccnjl cyclin J-like JBrowse link 10 29,122,713 29,181,610 RGD:1600115
G Ccnk cyclin K JBrowse link 6 132,090,235 132,113,560 RGD:1600115
G Ccnl1 cyclin L1 JBrowse link 2 157,747,295 157,759,838 RGD:1600115
G Ccnl2 cyclin L2 JBrowse link 5 173,256,301 173,268,279 RGD:1600115
G Ccno cyclin O JBrowse link 2 44,857,043 44,860,317 RGD:1600115
G Ccnq cyclin Q JBrowse link 10 66,019,519 66,020,682 RGD:1600115
G Ccnt1 cyclin T1 JBrowse link 7 140,215,052 140,245,958 RGD:1600115
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:1600115
G Cnot2 CCR4-NOT transcription complex, subunit 2 JBrowse link 7 59,526,105 59,617,307 RGD:1600115
G Cnot3 CCR4-NOT transcription complex, subunit 3 JBrowse link 1 64,130,823 64,147,066 RGD:1600115
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:1600115
G Ehf ets homologous factor JBrowse link 3 93,176,257 93,216,484 RGD:1600115
G Elf3 E74 like ETS transcription factor 3 JBrowse link 13 52,083,873 52,088,798 RGD:1600115
G Elf5 E74 like ETS transcription factor 5 JBrowse link 3 93,333,514 93,374,454 RGD:1600115
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:1600115
G Erg ETS transcription factor ERG JBrowse link 11 35,645,317 35,749,637 RGD:1600115
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:1600115
G Esrra estrogen related receptor, alpha JBrowse link 1 222,168,729 222,178,842 RGD:1600115
G Esrrb estrogen-related receptor beta JBrowse link 6 110,360,940 110,458,406 RGD:1600115
G Esrrg estrogen-related receptor gamma JBrowse link 13 106,063,799 106,683,353 RGD:1600115
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:1600115
G Ets2 ETS proto-oncogene 2, transcription factor JBrowse link 11 36,075,709 36,092,495 RGD:1600115
G Etv6 ETS variant transcription factor 6 JBrowse link 4 167,754,684 167,992,370 RGD:1600115
G Fli1 Fli-1 proto-oncogene, ETS transcription factor JBrowse link 8 33,541,932 33,661,111 RGD:1600115
G Gabpa GA binding protein transcription factor subunit alpha JBrowse link 11 24,293,845 24,322,822 RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:1600115
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1600115
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:1600115
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1600115
G Hist1h4m histone cluster 1, H4m RGD:1600115
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1600115
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1600115
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:1600115
G Hnf4g hepatocyte nuclear factor 4, gamma JBrowse link 2 100,225,880 100,372,710 RGD:1600115
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:1600115
G Hsf2 heat shock transcription factor 2 JBrowse link 20 38,935,820 38,963,444 RGD:1600115
G Hsf4 heat shock transcription factor 4 JBrowse link 19 37,225,800 37,232,048 RGD:1600115
G Hsfy2 heat shock transcription factor, Y linked 2 JBrowse link 9 63,289,937 63,291,350 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:1600115
G Kpna1 karyopherin subunit alpha 1 JBrowse link 11 67,652,573 67,717,180 RGD:1600115
G Kpna2 karyopherin subunit alpha 2 JBrowse link 10 95,200,029 95,212,111 RGD:1600115
G Kpna3 karyopherin subunit alpha 3 JBrowse link 15 41,696,356 41,770,112 RGD:1600115
G Kpna4 karyopherin subunit alpha 4 JBrowse link 2 165,684,345 165,739,874 RGD:1600115
G Kpna5 karyopherin subunit alpha 5 JBrowse link 20 32,509,573 32,573,591 RGD:1600115
G Kpna6 karyopherin subunit alpha 6 JBrowse link 5 147,852,738 147,867,600 RGD:1600115
G Kpna7 karyopherin subunit alpha 7 JBrowse link 12 11,347,631 11,378,810 RGD:1600115
G LOC100359600 karyopherin alpha 2-like JBrowse link 6 10,642,705 10,644,673 RGD:1600115
G LOC100909712 cyclin-L1-like JBrowse link 2 157,759,898 157,763,422 RGD:1600115
G LOC100910896 ETS-related transcription factor Elf-5-like RGD:1600115
G LOC100912489 histone H4-like JBrowse link 4 170,144,871 170,145,311 RGD:1600115
G LOC100912564 histone H4-like JBrowse link 4 170,182,634 170,183,074 RGD:1600115
G LOC103692976 cyclin-T1-like JBrowse link 7 140,149,991 140,172,615 RGD:1600115
G Maf MAF bZIP transcription factor JBrowse link 19 48,179,826 48,200,995 RGD:1600115
G Mafa MAF bZIP transcription factor A JBrowse link 7 116,779,368 116,781,815 RGD:1600115
G Mafb MAF bZIP transcription factor B JBrowse link 3 156,338,993 156,340,913 RGD:1600115
G Maff MAF bZIP transcription factor F JBrowse link 7 120,580,743 120,592,095 RGD:1600115
G Mafg MAF bZIP transcription factor G JBrowse link 10 109,802,877 109,811,476 RGD:1600115
G Mafk MAF bZIP transcription factor K JBrowse link 12 16,923,989 16,934,706 RGD:1600115
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:1600115
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:1600115
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:1600115
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:1600115
G Mbd5 methyl-CpG binding domain protein 5 JBrowse link 3 33,364,812 33,504,144 RGD:1600115
G Mbd6 methyl-CpG binding domain protein 6 JBrowse link 7 70,571,435 70,580,146 RGD:1600115
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1600115
G Mrtfa myocardin related transcription factor A JBrowse link 7 122,233,196 122,403,661 RGD:1600115
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1600115
G Mycl MYCL proto-oncogene, bHLH transcription factor JBrowse link 5 140,691,947 140,698,837 RGD:1600115
G Mycn MYCN proto-oncogene, bHLH transcription factor JBrowse link 6 38,222,554 38,228,419 RGD:1600115
G Mycs myc-like oncogene, s-myc protein JBrowse link X 17,823,554 17,824,846 RGD:1600115
G NEWGENE_1306399 cyclin J JBrowse link 1 260,092,938 260,110,729 RGD:1600115
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:1600115
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:1600115
G Nr0b1 nuclear receptor subfamily 0, group B, member 1 JBrowse link X 54,734,385 54,738,513 RGD:1600115
G Nr0b2 nuclear receptor subfamily 0, group B, member 2 JBrowse link 5 151,776,004 151,779,319 RGD:1600115
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 10 86,683,875 86,690,815 RGD:1600115
G Nr1d2 nuclear receptor subfamily 1, group D, member 2 JBrowse link 15 8,730,871 8,757,165 RGD:1600115
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 JBrowse link 1 100,554,577 100,559,896 RGD:1600115
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 3 80,004,130 80,014,197 RGD:1600115
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1600115
G Nr1h5 nuclear receptor subfamily 1, group H, member 5 JBrowse link 2 205,431,237 205,457,409 RGD:1600115
G Nr1i2 nuclear receptor subfamily 1, group I, member 2 JBrowse link 11 65,022,100 65,058,546 RGD:1600115
G Nr1i3 nuclear receptor subfamily 1, group I, member 3 JBrowse link 13 89,585,072 89,591,278 RGD:1600115
G Nr2c1 nuclear receptor subfamily 2, group C, member 1 JBrowse link 7 35,069,807 35,122,810 RGD:1600115
G Nr2c2 nuclear receptor subfamily 2, group C, member 2 JBrowse link 4 124,005,287 124,030,349 RGD:1600115
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 JBrowse link 20 47,286,843 47,306,318 RGD:1600115
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 JBrowse link 8 64,797,518 64,801,587 RGD:1600115
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 JBrowse link 2 5,569,954 5,579,894 RGD:1600115
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 JBrowse link 1 131,447,671 131,465,749 RGD:1600115
G Nr2f6 nuclear receptor subfamily 2, group F, member 6 JBrowse link 16 19,769,968 19,777,414 RGD:1600115
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:1600115
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 JBrowse link 19 34,408,275 34,761,003 RGD:1600115
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 JBrowse link 7 142,899,358 142,920,216 RGD:1600115
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 JBrowse link 3 43,111,258 43,128,391 RGD:1600115
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 JBrowse link 5 63,781,801 63,822,890 RGD:1600115
G Nr5a1 nuclear receptor subfamily 5, group A, member 1 JBrowse link 3 22,998,900 23,020,441 RGD:1600115
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 JBrowse link 13 53,750,470 53,870,288 RGD:1600115
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 JBrowse link 3 23,029,222 23,218,050 RGD:1600115
G Nrl neural retina leucine zipper JBrowse link 15 34,197,115 34,201,408 RGD:1600115
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1600115
G Nxf2 nuclear RNA export factor 2 JBrowse link X 105,772,718 105,793,324 RGD:1600115
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1600115
G Nxf5 nuclear RNA export factor 5 JBrowse link X 106,229,474 106,253,226 RGD:1600115
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1600115
G Pgr progesterone receptor JBrowse link 8 7,128,656 7,187,796 RGD:1600115
G Pold4 DNA polymerase delta 4, accessory subunit JBrowse link 1 219,480,841 219,483,244 RGD:1600115
G Polr1a RNA polymerase I subunit A JBrowse link 4 99,822,964 99,903,969 RGD:1600115
G Polr1e RNA polymerase I subunit E JBrowse link 5 60,572,573 60,588,097 RGD:1600115
G Polr2e RNA polymerase II subunit E JBrowse link 7 12,532,785 12,536,797 RGD:1600115
G Ppara peroxisome proliferator activated receptor alpha JBrowse link 7 126,618,872 126,687,282 RGD:1600115
G Ppard peroxisome proliferator-activated receptor delta JBrowse link 20 7,818,289 7,883,482 RGD:1600115
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:1600115
G Rad1 RAD1 checkpoint DNA exonuclease JBrowse link 2 60,461,513 60,469,646 RGD:1600115
G Rad17 RAD17 checkpoint clamp loader component JBrowse link 2 30,634,353 30,664,618 RGD:1600115
G Rad23a RAD23 homolog A, nucleotide excision repair protein JBrowse link 19 25,949,488 25,956,677 RGD:1600115
G Rad23b RAD23 homolog B, nucleotide excision repair protein JBrowse link 5 72,103,704 72,141,701 RGD:1600115
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:1600115
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:1600115
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:1600115
G Rel REL proto-oncogene, NF-kB subunit JBrowse link 14 108,490,794 108,517,582 RGD:1600115
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:1600115
G Relb RELB proto-oncogene, NF-kB subunit JBrowse link 1 80,517,081 80,545,019 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1600115
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link 5 48,561,325 48,779,214 RGD:1600115
G Rnmt RNA (guanine-7-) methyltransferase JBrowse link 18 64,084,746 64,108,246 RGD:1600115
G Rora RAR-related orphan receptor A JBrowse link 8 75,515,886 75,616,477 RGD:1600115
G Rorb RAR-related orphan receptor B JBrowse link 1 234,252,757 234,442,597 RGD:1600115
G Rorc RAR-related orphan receptor C JBrowse link 2 195,612,471 195,636,797 RGD:1600115
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:1600115
G Rxrb retinoid X receptor beta JBrowse link 20 3,822,673 3,829,138 RGD:1600115
G Rxrg retinoid X receptor gamma JBrowse link 13 85,818,473 85,868,555 RGD:1600115
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 2 196,495,867 196,527,412 RGD:1600115
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 15 38,699,135 39,745,035 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Siah1 siah E3 ubiquitin protein ligase 1 JBrowse link 19 21,372,163 21,395,773 RGD:1600115
G Siah2 siah E3 ubiquitin protein ligase 2 JBrowse link 2 148,874,151 148,891,900 RGD:1600115
G Siah3 siah E3 ubiquitin protein ligase family member 3 JBrowse link 15 57,505,449 57,568,743 RGD:1600115
G Spdef SAM pointed domain containing ets transcription factor JBrowse link 20 7,292,823 7,308,053 RGD:1600115
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1600115
G Thrb thyroid hormone receptor beta JBrowse link 15 8,890,578 9,239,815 RGD:1600115
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:1600115
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:1600115
G Zc3hc1 zinc finger, C3HC-type containing 1 JBrowse link 4 57,684,678 57,706,613 RGD:1600115
host cell PML body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
host cell viral assembly compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bicd1 BICD cargo adaptor 1 JBrowse link 4 184,018,845 184,167,628 RGD:1624291
viral integration complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:1624291
G Top2b DNA topoisomerase II beta JBrowse link 15 10,262,972 10,319,741 RGD:1624291
viral replication complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1624291
G Pi4ka phosphatidylinositol 4-kinase alpha JBrowse link 11 87,858,323 87,975,549 RGD:1600115
RGD:1624291
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 8 21,890,214 21,896,045 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19951
    cellular anatomical entity 19598
      host cellular component 195
        host cell part 194
          host intracellular part 192
            host intracellular organelle 181
              host intracellular membrane-bounded organelle 181
                host cell cytoplasmic vesicle + 0
                host cell endoplasmic reticulum + 0
                host cell endoplasmic reticulum-Golgi intermediate compartment + 0
                host cell endosome + 0
                host cell lysosome + 0
                host cell mitochondrion + 1
                host cell nucleus + 179
                host cell peroxisome 0
                host cell plastid + 0
                host cell viral assembly compartment 1
                host symbiosome + 0
Path 2
Term Annotations click to browse term
  cellular_component 19951
    cellular anatomical entity 19598
      host cellular component 195
        host cell 195
          host cell part 194
            host intracellular region 192
              host intracellular part 192
                host intracellular organelle 181
                  host intracellular membrane-bounded organelle 181
                    host cell cytoplasmic vesicle + 0
                    host cell endoplasmic reticulum + 0
                    host cell endoplasmic reticulum-Golgi intermediate compartment + 0
                    host cell endosome + 0
                    host cell lysosome + 0
                    host cell mitochondrion + 1
                    host cell nucleus + 179
                    host cell peroxisome 0
                    host cell plastid + 0
                    host cell viral assembly compartment 1
                    host symbiosome + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.