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ONTOLOGY REPORT - ANNOTATIONS


Term:host intracellular membrane-bounded organelle
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Accession:GO:0033648 term browser browse the term
Definition:Organized structure of distinctive morphology and function, as found in host cells, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Synonyms:exact_synonym: host intracellular membrane-enclosed organelle


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host cell mitochondrial intermembrane space term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SCO1 synthesis of cytochrome C oxidase 1 JBrowse link 17 10,672,474 10,697,533 RGD:2290271
host cell nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC008012.1 novel transcript RGD:2290271
G AP003419.1 novel protein RGD:2290271
G BACH1 BTB domain and CNC homolog 1 JBrowse link 21 29,298,922 29,361,896 RGD:2290271
G BACH2 BTB domain and CNC homolog 2 JBrowse link 6 89,926,528 90,296,908 RGD:2290271
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 12 56,595,596 56,636,816 RGD:2290271
G BAZ2B bromodomain adjacent to zinc finger domain 2B JBrowse link 2 159,315,312 159,712,442 RGD:2290271
G C9orf129 chromosome 9 open reading frame 129 JBrowse link 9 93,329,488 93,346,303 RGD:2290271
G CCNA1 cyclin A1 JBrowse link 13 36,430,488 36,442,882 RGD:2290271
G CCNA2 cyclin A2 JBrowse link 4 121,816,444 121,823,883 RGD:2290271
G CCNB1 cyclin B1 JBrowse link 5 69,167,010 69,178,245 RGD:2290271
G CCNB2 cyclin B2 JBrowse link 15 59,105,146 59,125,045 RGD:2290271
G CCNB3 cyclin B3 JBrowse link X 50,202,713 50,351,914 RGD:2290271
G CCNC cyclin C JBrowse link 6 99,542,387 99,568,814 RGD:2290271
G CCND1 cyclin D1 JBrowse link 11 69,641,156 69,654,474 RGD:2290271
G CCND2 cyclin D2 JBrowse link 12 4,273,762 4,305,353 RGD:2290271
G CCND3 cyclin D3 JBrowse link 6 41,934,933 42,048,894 RGD:2290271
G CCNE1 cyclin E1 JBrowse link 19 29,811,991 29,824,312 RGD:2290271
G CCNE2 cyclin E2 JBrowse link 8 94,880,224 94,896,671 RGD:2290271
G CCNF cyclin F JBrowse link 16 2,429,447 2,458,854 RGD:2290271
G CCNH cyclin H JBrowse link 5 87,311,471 87,413,033 RGD:2290271
G CCNJ cyclin J JBrowse link 10 96,042,848 96,060,870 RGD:2290271
G CCNJL cyclin J like JBrowse link 5 160,249,083 160,339,570 RGD:2290271
G CCNK cyclin K JBrowse link 14 99,481,409 99,512,440 RGD:2290271
G CCNL1 cyclin L1 JBrowse link 3 157,143,121 157,160,180 RGD:2290271
G CCNL2 cyclin L2 JBrowse link 1 1,385,711 1,399,342 RGD:2290271
G CCNO cyclin O JBrowse link 5 55,231,152 55,233,717 RGD:2290271
G CCNP cyclin P JBrowse link 19 40,222,208 40,227,111 RGD:2290271
G CCNQ cyclin Q JBrowse link X 153,587,925 153,599,165 RGD:2290271
G CCNT1 cyclin T1 JBrowse link 12 48,688,458 48,716,707 RGD:2290271
G CCNT2 cyclin T2 JBrowse link 2 134,918,810 134,959,342 RGD:2290271
G CENPB centromere protein B JBrowse link 20 3,783,851 3,786,740 RGD:2290271
G CNOT2 CCR4-NOT transcription complex subunit 2 JBrowse link 12 70,242,993 70,354,993 RGD:2290271
G CNOT3 CCR4-NOT transcription complex subunit 3 JBrowse link 19 54,137,689 54,155,690 RGD:2290271
G EHF ETS homologous factor JBrowse link 11 34,621,093 34,663,288 RGD:2290271
G ELF3 E74 like ETS transcription factor 3 JBrowse link 1 202,010,583 202,017,183 RGD:2290271
G ELF5 E74 like ETS transcription factor 5 JBrowse link 11 34,478,791 34,513,794 RGD:2290271
G ERG ETS transcription factor ERG JBrowse link 21 38,367,261 38,661,783 RGD:2290271
G ETS1 ETS proto-oncogene 1, transcription factor JBrowse link 11 128,458,761 128,587,593 RGD:2290271
G ETS2 ETS proto-oncogene 2, transcription factor JBrowse link 21 38,805,183 38,824,955 RGD:2290271
G ETV6 ETS variant transcription factor 6 JBrowse link 12 11,649,601 11,895,386 RGD:2290271
G ETV7 ETS variant transcription factor 7 JBrowse link 6 36,354,088 36,387,800 RGD:2290271
G FAM120A family with sequence similarity 120A JBrowse link 9 93,451,685 93,566,112 RGD:2290271
G FAM120B family with sequence similarity 120B JBrowse link 6 170,290,703 170,407,748 RGD:2290271
G FAM120C family with sequence similarity 120C JBrowse link X 54,068,324 54,183,284 RGD:2290271
G FLI1 Fli-1 proto-oncogene, ETS transcription factor JBrowse link 11 128,685,263 128,813,267 RGD:2290271
G GABPA GA binding protein transcription factor subunit alpha JBrowse link 21 25,734,972 25,772,460 RGD:2290271
G H1-0 H1.0 linker histone JBrowse link 22 37,805,229 37,807,432 RGD:2290271
G H1-1 H1.1 linker histone, cluster member JBrowse link 6 26,017,032 26,017,787 RGD:2290271
G H1-10 H1.10 linker histone JBrowse link 3 129,314,771 129,316,286 RGD:2290271
G H1-2 H1.2 linker histone, cluster member JBrowse link 6 26,055,740 26,056,470 RGD:2290271
G H1-3 H1.3 linker histone, cluster member JBrowse link 6 26,234,212 26,234,987 RGD:2290271
G H1-4 H1.4 linker histone, cluster member JBrowse link 6 26,156,329 26,157,115 RGD:2290271
G H1-5 H1.5 linker histone, cluster member JBrowse link 6 27,866,792 27,867,588 RGD:2290271
G H1-6 H1.6 linker histone, cluster member JBrowse link 6 26,107,412 26,108,135 RGD:2290271
G H1-8 H1.8 linker histone JBrowse link 3 129,543,175 129,555,185 RGD:2290271
G H1-9P H1.9 linker histone, pseudogene JBrowse link 17 50,171,428 50,172,476 RGD:2290271
G H4-16 H4 histone 16 JBrowse link 12 14,770,720 14,771,131 RGD:2290271
G H4C1 H4 clustered histone 1 JBrowse link 6 26,021,649 26,022,050 RGD:2290271
G H4C11 H4 clustered histone 11 JBrowse link 6 27,824,092 27,824,480 RGD:2290271
G H4C12 H4 clustered histone 12 JBrowse link 6 27,831,174 27,831,560 RGD:2290271
G H4C13 H4 clustered histone 13 JBrowse link 6 27,873,148 27,873,534 RGD:2290271
G H4C14 H4 clustered histone 14 JBrowse link 1 149,832,657 149,833,052 RGD:2290271
G H4C15 H4 clustered histone 15 JBrowse link 1 149,853,262 149,861,159 RGD:2290271
G H4C2 H4 clustered histone 2 JBrowse link 6 26,026,896 26,027,283 RGD:2290271
G H4C3 H4 clustered histone 3 JBrowse link 6 26,103,933 26,104,337 RGD:2290271
G H4C4 H4 clustered histone 4 JBrowse link 6 26,188,710 26,189,112 RGD:2290271
G H4C5 H4 clustered histone 5 JBrowse link 6 26,204,610 26,205,021 RGD:2290271
G H4C6 H4 clustered histone 6 JBrowse link 6 26,240,393 26,240,793 RGD:2290271
G H4C8 H4 clustered histone 8 JBrowse link 6 26,285,126 26,285,534 RGD:2290271
G H4C9 H4 clustered histone 9 JBrowse link 6 27,139,282 27,139,678 RGD:2290271
G HP1BP3 heterochromatin protein 1 binding protein 3 JBrowse link 1 20,740,266 20,787,307 RGD:2290271
G HSF1 heat shock transcription factor 1 JBrowse link 8 144,291,603 144,314,720 RGD:2290271
G HSF2 heat shock transcription factor 2 JBrowse link 6 122,399,551 122,433,119 RGD:2290271
G HSF4 heat shock transcription factor 4 JBrowse link 16 67,163,761 67,169,941 RGD:2290271
G HSF5 heat shock transcription factor 5 JBrowse link 17 58,420,167 58,488,408 RGD:2290271
G HSFX1 heat shock transcription factor family, X-linked 1 JBrowse link X 149,774,068 149,776,867 RGD:2290271
G HSFX2 heat shock transcription factor family, X-linked 2 JBrowse link X 149,592,512 149,595,310 RGD:2290271
G HSFX3 heat shock transcription factor family, X-linked member 3 JBrowse link X 149,548,210 149,549,924 RGD:2290271
G HSFX4 heat shock transcription factor family, X-linked member 4 JBrowse link X 149,929,573 149,931,287 RGD:2290271
G HSFY1 heat shock transcription factor Y-linked 1 JBrowse link Y 18,529,678 18,588,963 RGD:2290271
G HSFY2 heat shock transcription factor Y-linked 2 JBrowse link Y 18,731,440 18,790,735 RGD:2290271
G KAT6A lysine acetyltransferase 6A JBrowse link 8 41,929,479 42,051,988 RGD:2290271
G KAT6B lysine acetyltransferase 6B JBrowse link 10 74,824,927 75,032,624 RGD:2290271
G KPNA1 karyopherin subunit alpha 1 JBrowse link 3 122,421,902 122,514,939 RGD:2290271
G KPNA2 karyopherin subunit alpha 2 JBrowse link 17 68,035,735 68,046,859 RGD:2290271
G KPNA3 karyopherin subunit alpha 3 JBrowse link 13 49,699,307 49,792,682 RGD:2290271
G KPNA4 karyopherin subunit alpha 4 JBrowse link 3 160,495,007 160,565,571 RGD:2290271
G KPNA5 karyopherin subunit alpha 5 JBrowse link 6 116,677,643 116,741,867 RGD:2290271
G KPNA6 karyopherin subunit alpha 6 JBrowse link 1 32,108,043 32,176,563 RGD:2290271
G KPNA7 karyopherin subunit alpha 7 JBrowse link 7 99,145,467 99,219,417 RGD:2290271
G MAF MAF bZIP transcription factor JBrowse link 16 79,202,624 79,601,952 RGD:2290271
G MAFA MAF bZIP transcription factor A JBrowse link 8 143,428,064 143,430,732 RGD:2290271
G MAFB MAF bZIP transcription factor B JBrowse link 20 40,685,848 40,689,236 RGD:2290271
G MAFF MAF bZIP transcription factor F JBrowse link 22 38,201,932 38,216,511 RGD:2290271
G MAFG MAF bZIP transcription factor G JBrowse link 17 81,918,270 81,927,735 RGD:2290271
G MAFK MAF bZIP transcription factor K JBrowse link 7 1,530,702 1,543,043 RGD:2290271
G MBD1 methyl-CpG binding domain protein 1 JBrowse link 18 50,266,882 50,281,774 RGD:2290271
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 18 54,151,606 54,224,669 RGD:2290271
G MBD3 methyl-CpG binding domain protein 3 JBrowse link 19 1,573,596 1,592,865 RGD:2290271
G MBD4 methyl-CpG binding domain 4, DNA glycosylase JBrowse link 3 129,430,944 129,440,179 RGD:2290271
G MBD5 methyl-CpG binding domain protein 5 JBrowse link 2 148,021,011 148,516,971 RGD:2290271
G MBD6 methyl-CpG binding domain protein 6 JBrowse link 12 57,520,710 57,530,148 RGD:2290271
G MECP2 methyl-CpG binding protein 2 JBrowse link X 154,021,573 154,097,717 RGD:2290271
G MRTFA myocardin related transcription factor A JBrowse link 22 40,410,289 40,636,719 RGD:2290271
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 8 127,735,434 127,742,951 RGD:2290271
G MYCL MYCL proto-oncogene, bHLH transcription factor JBrowse link 1 39,895,428 39,901,917 RGD:2290271
G MYCLP1 MYCL pseudogene 1 JBrowse link X 107,272,464 107,276,556 RGD:2290271
G MYCN MYCN proto-oncogene, bHLH transcription factor JBrowse link 2 15,940,550 15,947,004 RGD:2290271
G NFE2 nuclear factor, erythroid 2 JBrowse link 12 54,292,107 54,301,037 RGD:2290271
G NFE2L1 nuclear factor, erythroid 2 like 1 JBrowse link 17 48,048,359 48,061,545 RGD:2290271
G NFE2L2 nuclear factor, erythroid 2 like 2 JBrowse link 2 177,230,303 177,265,131 RGD:2290271
G NFE2L3 nuclear factor, erythroid 2 like 3 JBrowse link 7 26,152,198 26,187,137 RGD:2290271
G NFKB1 nuclear factor kappa B subunit 1 JBrowse link 4 102,501,266 102,617,302 RGD:2290271
G NFKB2 nuclear factor kappa B subunit 2 JBrowse link 10 102,394,110 102,402,529 RGD:2290271
G NR1H4 nuclear receptor subfamily 1 group H member 4 JBrowse link 12 100,473,866 100,564,414 RGD:2290271
G NR1I2 nuclear receptor subfamily 1 group I member 2 JBrowse link 3 119,780,484 119,818,485 RGD:2290271
G NR1I3 nuclear receptor subfamily 1 group I member 3 JBrowse link 1 161,229,666 161,238,623 RGD:2290271
G NRL neural retina leucine zipper JBrowse link 14 24,078,662 24,114,949 RGD:2290271
G NXF1 nuclear RNA export factor 1 JBrowse link 11 62,792,125 62,805,443 RGD:2290271
G NXF2 nuclear RNA export factor 2 JBrowse link X 102,247,167 102,326,722 RGD:2290271
G NXF2B nuclear RNA export factor 2B JBrowse link X 102,360,395 102,440,008 RGD:2290271
G NXF3 nuclear RNA export factor 3 JBrowse link X 103,075,810 103,093,143 RGD:2290271
G NXF5 nuclear RNA export factor 5 JBrowse link X 101,832,112 101,857,577 RGD:2290271
G POLD4 DNA polymerase delta 4, accessory subunit JBrowse link 11 67,350,765 67,353,596 RGD:2290271
G POLR1A RNA polymerase I subunit A JBrowse link 2 86,020,216 86,105,886 RGD:2290271
G POLR1E RNA polymerase I subunit E JBrowse link 9 37,485,935 37,503,697 RGD:2290271
G POLR2E RNA polymerase II, I and III subunit E JBrowse link 19 1,086,574 1,095,392 RGD:2290271
G RAD1 RAD1 checkpoint DNA exonuclease JBrowse link 5 34,905,260 34,915,504 RGD:2290271
G RAD17 RAD17 checkpoint clamp loader component JBrowse link 5 69,369,297 69,414,801 RGD:2290271
G RAD23A RAD23 homolog A, nucleotide excision repair protein JBrowse link 19 12,945,814 12,953,643 RGD:2290271
G RAD23B RAD23 homolog B, nucleotide excision repair protein JBrowse link 9 107,283,279 107,332,194 RGD:2290271
G REL REL proto-oncogene, NF-kB subunit JBrowse link 2 60,881,521 60,931,612 RGD:2290271
G RELA RELA proto-oncogene, NF-kB subunit JBrowse link 11 65,653,596 65,662,972 RGD:2290271
G RELB RELB proto-oncogene, NF-kB subunit JBrowse link 19 45,001,449 45,038,194 RGD:2290271
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 88,609,897 88,963,618 RGD:2290271
G RNMT RNA guanine-7 methyltransferase JBrowse link 18 13,726,645 13,764,556 RGD:2290271
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 1 150,926,263 150,964,737 RGD:2290271
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 JBrowse link 13 49,444,274 49,495,003 RGD:2290271
G SHPRH SNF2 histone linker PHD RING helicase JBrowse link 6 145,857,838 145,964,358 RGD:2290271
G SIAH1 siah E3 ubiquitin protein ligase 1 JBrowse link 16 48,354,581 48,448,435 RGD:2290271
G SIAH2 siah E3 ubiquitin protein ligase 2 JBrowse link 3 150,741,125 150,763,169 RGD:2290271
G SIAH3 siah E3 ubiquitin protein ligase family member 3 JBrowse link 13 45,777,242 45,851,753 RGD:2290271
G SPDEF SAM pointed domain containing ETS transcription factor JBrowse link 6 34,537,800 34,556,333 RGD:2290271
G THRA thyroid hormone receptor alpha JBrowse link 17 40,062,193 40,093,867 RGD:2290271
G THRB thyroid hormone receptor beta JBrowse link 3 24,117,153 24,495,708 RGD:2290271
G XPA XPA, DNA damage recognition and repair factor JBrowse link 9 97,654,398 97,697,409 RGD:2290271
G ZC3HC1 zinc finger C3HC-type containing 1 JBrowse link 7 130,018,286 130,051,451 RGD:2290271
host cell PML body term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CNOT7 CCR4-NOT transcription complex subunit 7 JBrowse link 8 17,221,981 17,246,909 RGD:2290271
host cell viral assembly compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BICD1 BICD cargo adaptor 1 JBrowse link 12 32,106,773 32,383,637 RGD:2290271
viral integration complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TOP2A DNA topoisomerase II alpha JBrowse link 17 40,388,525 40,417,902 RGD:2290271
G TOP2B DNA topoisomerase II beta JBrowse link 3 25,597,905 25,664,907 RGD:2290271
viral replication complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FMR1 FMRP translational regulator 1 JBrowse link X 147,911,919 147,951,127 RGD:2290271
G MOV10 Mov10 RISC complex RNA helicase JBrowse link 1 112,674,312 112,702,377 RGD:2290271
G PI4KA phosphatidylinositol 4-kinase alpha JBrowse link 22 20,707,691 20,858,812 RGD:2290271
G SHFL shiftless antiviral inhibitor of ribosomal frameshifting JBrowse link 19 10,086,119 10,093,249 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19246
    cellular anatomical entity 19006
      host cellular component 221
        host cell part 170
          host intracellular part 168
            host intracellular organelle 156
              host intracellular membrane-bounded organelle 156
                host cell cytoplasmic vesicle + 0
                host cell endoplasmic reticulum + 0
                host cell endoplasmic reticulum-Golgi intermediate compartment + 0
                host cell endosome + 0
                host cell lysosome + 0
                host cell mitochondrion + 1
                host cell nucleus + 154
                host cell peroxisome 0
                host cell plastid + 0
                host cell viral assembly compartment 1
                host symbiosome + 0
Path 2
Term Annotations click to browse term
  cellular_component 19246
    cellular anatomical entity 19006
      host cellular component 221
        host cell 221
          host cell part 170
            host intracellular region 168
              host intracellular part 168
                host intracellular organelle 156
                  host intracellular membrane-bounded organelle 156
                    host cell cytoplasmic vesicle + 0
                    host cell endoplasmic reticulum + 0
                    host cell endoplasmic reticulum-Golgi intermediate compartment + 0
                    host cell endosome + 0
                    host cell lysosome + 0
                    host cell mitochondrion + 1
                    host cell nucleus + 154
                    host cell peroxisome 0
                    host cell plastid + 0
                    host cell viral assembly compartment 1
                    host symbiosome + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.