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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside bisphosphate metabolic process
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Accession:GO:0033865 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: nucleoside bisphosphate metabolism


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ISO
IBA
(MGI:MGI:2448448|PMID:12414806)
PMID:21873635
(PMID:14747722), (PMID:23207770)
RGD PMID:12414806, PMID:14747722, PMID:23207770, PMID:21873635 MGI:MGI:2448448, RGD:13792537 NCBI chr 2:236,605,695...236,680,772
Ensembl chr 2:236,605,695...236,680,772
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:251,145,264...251,230,716
Ensembl chr 1:251,145,253...251,230,715
JBrowse link
3'-phosphoadenosine 5'-phosphosulfate metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO
IEA
(PMID:7830796)
GO_REF:0000107
RGD
Ensembl
PMID:7830796 GO_REF:0000107 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G LOC100910235 sulfotransferase 1C1-like ISO (PMID:23207770) RGD PMID:23207770 NCBI chr 9:4,323,997...4,328,175
Ensembl chr 9:4,324,211...4,327,679
JBrowse link
G Sult1a1 sulfotransferase family 1A member 1 ISO (PMID:12471039), (PMID:23207770) RGD PMID:12471039, PMID:23207770 NCBI chr 1:198,100,586...198,104,106
Ensembl chr 1:198,100,586...198,104,109
JBrowse link
G Sult1b1 sulfotransferase family 1B member 1 ISO (PMID:23207770) RGD PMID:23207770 NCBI chr14:22,142,412...22,155,246
Ensembl chr14:22,142,364...22,155,231
JBrowse link
G Sult1c3 sulfotransferase family 1C member 3 ISO (PMID:17425406) RGD PMID:17425406 NCBI chr 9:4,931,038...4,978,847
Ensembl chr 9:4,930,818...4,978,892
JBrowse link
G Sult1e1 sulfotransferase family 1E member 1 ISO (PMID:23207770) RGD PMID:23207770 NCBI chr14:22,070,861...22,089,264
Ensembl chr14:22,072,024...22,089,248
JBrowse link
G Sult2a1 sulfotransferase family 2A member 1 ISO (PMID:23207770) RGD PMID:23207770 NCBI chr 1:76,558,721...76,614,315
Ensembl chr 1:76,252,329...76,780,230
JBrowse link
G Sult2b1 sulfotransferase family 2B member 1 ISO (PMID:12923182) RGD PMID:12923182 NCBI chr 1:101,712,254...101,774,683
Ensembl chr 1:101,710,959...101,773,508
JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Acly ATP citrate lyase NAS
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:1371749)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:1371749, PMID:2295639, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:631761, RGD:13792537 NCBI chr10:88,392,248...88,442,845
Ensembl chr10:88,392,248...88,442,845
JBrowse link
G Acss1 acyl-CoA synthetase short-chain family member 1 ISO (MGI:MGI:2151932|PMID:11150295)
(PMID:16788062)
RGD PMID:11150295, PMID:16788062 MGI:MGI:2151932 NCBI chr 3:146,420,346...146,470,293
Ensembl chr 3:146,420,346...146,470,293
JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 ISO (MGI:MGI:2151932|PMID:11150295) RGD PMID:11150295 MGI:MGI:2151932 NCBI chr 3:151,032,925...151,075,856
Ensembl chr 3:151,032,952...151,075,856
JBrowse link
G Mlycd malonyl-CoA decarboxylase IDA
IBA
ISO
IEA
PMID:21873635
(PMID:10417274), (PMID:10455107), (PMID:9869665)
GO_REF:0000041
RGD
UniProt
PMID:9869665, PMID:10417274, PMID:10455107, PMID:17316539, PMID:21873635 GO_REF:0000041, RGD:1600790, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO (PMID:29754768) RGD PMID:29754768 NCBI chr 5:138,466,298...138,470,108
Ensembl chr 5:138,466,293...138,470,096
JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:146,420,346...146,470,293
Ensembl chr 3:146,420,346...146,470,293
JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7487891, PMID:21873635 RGD:1599112, RGD:13792537 NCBI chr 8:55,062,549...55,087,832
Ensembl chr 8:55,062,551...55,087,832
JBrowse link
G Dld dihydrolipoamide dehydrogenase IDA RGD PMID:7487891 RGD:1599112 NCBI chr 6:50,597,677...50,618,694
Ensembl chr 6:50,597,677...50,618,694
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 IDA
IBA
ISO
IEA
PMID:21873635
(PMID:19081061)
GO_REF:0000002
RGD
InterPro
PMID:19081061, PMID:7487891, PMID:21873635 GO_REF:0000002, RGD:1599112, RGD:13792537 NCBI chr  X:37,329,779...37,343,410
Ensembl chr  X:37,329,779...37,343,410
JBrowse link
G Pdha1l1 pyruvate dehydrogenase (lipoamide) alpha 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:88,344,440...88,347,335
Ensembl chr16:88,345,247...88,347,369
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7487891, PMID:21873635 RGD:1599112, RGD:13792537 NCBI chr 2:246,736,449...246,737,997
Ensembl chr 2:246,736,459...246,737,997
JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta IDA
IBA
ISO
IEA
PMID:21873635
(PMID:19081061)
GO_REF:0000107
RGD
Ensembl
PMID:19081061, PMID:7487891, PMID:21873635 GO_REF:0000107, RGD:1599112, RGD:13792537 NCBI chr15:18,540,826...18,546,855
Ensembl chr15:18,539,210...18,546,854
JBrowse link
G Pdhx pyruvate dehydrogenase complex, component X IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:92,910,300...92,933,725
Ensembl chr 3:92,909,725...92,969,050
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 TAS RGD PMID:12435272 RGD:729541 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) RGD PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
acetyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaa2 acetyl-CoA acyltransferase 2 IDA RGD PMID:16476568 RGD:2317620 NCBI chr18:70,733,872...70,762,395
Ensembl chr18:70,733,872...70,762,395
JBrowse link
G Acaca acetyl-CoA carboxylase alpha IEA
ISO
GO_REF:0000107
(MGI:MGI:4840155|PMID:20952656)
Ensembl
RGD
PMID:20952656 GO_REF:0000107, MGI:MGI:4840155 NCBI chr10:71,519,392...71,719,910
Ensembl chr10:71,536,533...71,719,910
JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO (PMID:20952656) RGD PMID:20952656 NCBI chr12:48,127,149...48,238,969
Ensembl chr12:48,127,149...48,238,887
JBrowse link
G Acly ATP citrate lyase IDA RGD PMID:18062843 RGD:2317315 NCBI chr10:88,392,248...88,442,845
Ensembl chr10:88,392,248...88,442,845
JBrowse link
G Acot12 acyl-CoA thioesterase 12 ISO
IEA
(MGI:MGI:2450440|PMID:12545200)
GO_REF:0000107
RGD
Ensembl
PMID:12545200 GO_REF:0000107, MGI:MGI:2450440 NCBI chr 2:20,857,056...20,901,656
Ensembl chr 2:20,857,202...20,901,659
JBrowse link
G Cs citrate synthase IDA RGD PMID:5820645, PMID:938457, PMID:818082 RGD:2306824, RGD:2306828, RGD:2306825 NCBI chr 7:2,752,680...2,778,963
Ensembl chr 7:2,752,680...2,778,963
JBrowse link
G Fasn fatty acid synthase IDA RGD PMID:18062843 RGD:2317315 NCBI chr10:109,987,735...110,005,901
Ensembl chr10:109,987,735...110,005,901
JBrowse link
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:52,427,351...52,445,082
Ensembl chr 2:52,431,601...52,445,055
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO
IBA
(PMID:23751782)
PMID:21873635
RGD PMID:23751782, PMID:21873635 RGD:13792537 NCBI chr 2:200,452,623...200,480,785
Ensembl chr 2:200,452,624...200,479,423
JBrowse link
acyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase, short/branched chain IDA PMID:8660691 MGI PMID:8660691 RGD:631739 NCBI chr 1:201,981,362...202,022,771
Ensembl chr 1:201,981,357...202,021,008
JBrowse link
G Acnat1 acyl-coenzyme A amino acid N-acyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:64,710,885...64,718,500
Ensembl chr 5:64,713,443...64,718,131
JBrowse link
G Acnat2 acyl-coenzyme A amino acid N-acyltransferase 2 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 5:64,669,998...64,674,250
Ensembl chr 5:64,669,999...64,702,892
JBrowse link
G Acot1 acyl-CoA thioesterase 1 IEA
ISO
IBA
GO_REF:0000002
(PMID:16940157)
PMID:21873635
InterPro
RGD
PMID:16940157, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 6:107,485,088...107,493,082
Ensembl chr 6:107,485,249...107,493,798
JBrowse link
G Acot11 acyl-CoA thioesterase 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:126,347,478...126,395,655
Ensembl chr 5:126,347,435...126,395,668
JBrowse link
G Acot12 acyl-CoA thioesterase 12 IDA
IBA
PMID:11322891
PMID:21873635
HGNC
GO_Central
PMID:11322891, PMID:21873635 RGD:633789, RGD:13792537 NCBI chr 2:20,857,056...20,901,656
Ensembl chr 2:20,857,202...20,901,659
JBrowse link
G Acot2 acyl-CoA thioesterase 2 IDA
IBA
ISO
IEA
hydrolysis
PMID:21873635
(PMID:10944470), (PMID:16940157)
GO_REF:0000002
RGD
InterPro
PMID:10944470, PMID:16940157, PMID:7744868, PMID:21873635 GO_REF:0000002, RGD:2315867, RGD:13792537 NCBI chr 6:107,460,596...107,468,324
Ensembl chr 6:107,460,668...107,467,487
JBrowse link
G Acot3 acyl-CoA thioesterase 3 IBA
ISO
PMID:21873635
(MGI:MGI:3663233|PMID:16940157)
RGD PMID:16940157, PMID:21873635 MGI:MGI:3663233, RGD:13792537 NCBI chr 6:107,531,508...107,537,446
Ensembl chr 6:107,531,528...107,536,789
JBrowse link
G Acot4 acyl-CoA thioesterase 4 ISO
IBA
(PMID:16940157)
PMID:21873635
(MGI:MGI:3663233|PMID:16940157)
RGD PMID:16940157, PMID:21873635 MGI:MGI:3663233, RGD:13792537 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
G Acot5 acyl-CoA thioesterase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,550,904...107,557,688
Ensembl chr 6:107,550,904...107,557,688
JBrowse link
G Acot6 acyl-CoA thioesterase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,581,357...107,590,431
Ensembl chr 6:107,581,608...107,590,373
JBrowse link
G Acot7 acyl-CoA thioesterase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Acot8 acyl-CoA thioesterase 8 ISO
IBA
IDA
ISS
IEA
(MGI:MGI:2156286|PMID:11673457)
PMID:21873635
PMID:11785945
(PMID:9153233), (PMID:9299485)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:9153233, PMID:9299485, PMID:11673457, PMID:21873635, PMID:11785945 GO_REF:0000024, GO_REF:0000107, MGI:MGI:2156286, RGD:13792537, RGD:70235 NCBI chr 3:161,260,837...161,272,495
Ensembl chr 3:161,259,735...161,272,460
JBrowse link
G Acot9 acyl-CoA thioesterase 9 ISO
IBA
(MGI:MGI:1928308|PMID:10383425)
PMID:21873635
RGD PMID:10383425, PMID:21873635 MGI:MGI:1928308, RGD:13792537 NCBI chr  X:43,543,069...43,592,200
Ensembl chr  X:43,543,070...43,592,200
JBrowse link
G Acsm2 acyl-CoA synthetase medium-chain family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,289,957...189,329,007
Ensembl chr 1:189,289,957...189,395,276
JBrowse link
G Acsm3 acyl-CoA synthetase medium-chain family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,514,504...189,541,233
Ensembl chr 1:189,514,553...189,541,224
JBrowse link
G Acsm4 acyl-CoA synthetase medium-chain family member 4 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:12709059, PMID:21873635 RGD:1299602, RGD:13792537 NCBI chr 1:189,432,604...189,458,799
Ensembl chr 1:189,432,604...189,457,048
JBrowse link
G Acsm5 acyl-CoA synthetase medium-chain family member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,240,955...189,270,422
Ensembl chr 1:189,233,141...189,272,172
JBrowse link
G Baat bile acid CoA:amino acid N-acyltransferase ISO
IBA
(PMID:12810727)
PMID:21873635
RGD PMID:12810727, PMID:21873635 RGD:13792537 NCBI chr 5:64,768,397...64,777,368
Ensembl chr 5:64,768,401...64,777,368
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein TAS RGD PMID:7690962 RGD:728881 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908
JBrowse link
G Dbil5 diazepam binding inhibitor-like 5 TAS RGD PMID:10415332 RGD:61789 NCBI chr10:64,375,926...64,376,938
Ensembl chr10:64,375,924...64,376,938
JBrowse link
G Gcdh glutaryl-CoA dehydrogenase IDA RGD PMID:6895440 RGD:1598697 NCBI chr19:26,000,497...26,006,970
Ensembl chr19:26,000,497...26,006,970
JBrowse link
G Gpam glycerol-3-phosphate acyltransferase, mitochondrial ISO
IEA
MGI:MGI:2669956 (MGI:MGI:3619815|PMID:15878874)
GO_REF:0000107
RGD
Ensembl
PMID:15878874 GO_REF:0000107, MGI:MGI:3619815 NCBI chr 1:275,843,823...275,906,880
Ensembl chr 1:275,846,819...275,906,686
JBrowse link
G Gpat4 glycerol-3-phosphate acyltransferase 4 ISO (PMID:18238778) RGD PMID:18238778 NCBI chr16:73,615,949...73,649,769
Ensembl chr16:73,615,949...73,649,767
JBrowse link
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase IDA RGD PMID:2573547 RGD:1599519 NCBI chr 5:154,294,841...154,308,582
Ensembl chr 5:154,294,806...154,308,640
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha IDA RGD PMID:15870076 RGD:1625002 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Oxsm 3-oxoacyl-ACP synthase, mitochondrial ISO (PMID:15668256) RGD PMID:15668256 NCBI chr15:10,462,380...10,466,496
Ensembl chr15:10,462,106...10,466,496
JBrowse link
benzoyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Glyat glycine-N-acyltransferase ISO
IEA
(PMID:22475485)
GO_REF:0000107
RGD
Ensembl
PMID:22475485 GO_REF:0000107 NCBI chr 1:229,060,125...229,081,113
Ensembl chr 1:229,063,714...229,080,410
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Ak6 adenylate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:30,664,407...30,676,464
Ensembl chr 2:30,664,217...30,676,464
Ensembl chr20:30,664,217...30,676,464
JBrowse link
G Coasy Coenzyme A synthase ISO
IBA
(MGI:MGI:2181228|PMID:11980892)
PMID:21873635
(PMID:11923312)
RGD PMID:11923312, PMID:11980892, PMID:21873635 MGI:MGI:2181228, RGD:13792537 NCBI chr10:88,992,413...88,996,677
Ensembl chr10:88,992,487...88,996,676
JBrowse link
G Dcakd dephospho-CoA kinase domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,095,601...91,126,733
Ensembl chr10:91,095,545...91,122,018
JBrowse link
G NEWGENE_1306267 phosphopantothenoylcysteine decarboxylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,086,821...62,109,164
Ensembl chr 8:62,193,705...62,215,293
Ensembl chr 8:62,193,705...62,215,293
JBrowse link
G Pank1 pantothenate kinase 1 ISO
IBA
MGI:MGI:2176050|MGI:MGI:4462018 (MGI:MGI:3607004|PMID:16040613), (MGI:MGI:4461354|PMID:20559429), (MGI:MGI:5446555|PMID:22815849)
PMID:21873635
RGD PMID:16040613, PMID:20559429, PMID:22815849, PMID:21873635 MGI:MGI:3607004, MGI:MGI:4461354, MGI:MGI:5446555, RGD:13792537 NCBI chr 1:253,115,400...253,189,643
Ensembl chr 1:253,119,112...253,185,533
JBrowse link
G Pank2 pantothenate kinase 2 ISO
IBA
MGI:MGI:2176050|MGI:MGI:5446719 (MGI:MGI:5446555|PMID:22815849)
PMID:21873635
RGD PMID:22815849, PMID:21873635 MGI:MGI:5446555, RGD:13792537 NCBI chr 3:123,807,911...123,841,797
Ensembl chr 3:123,807,952...123,841,797
JBrowse link
G Pank3 pantothenate kinase 3 ISO
IBA
(MGI:MGI:3607004|PMID:16040613)
(PMID:20797618), (PMID:30927326)
PMID:21873635
RGD PMID:16040613, PMID:20797618, PMID:30927326, PMID:21873635 MGI:MGI:3607004, RGD:13792537 NCBI chr10:20,591,432...20,615,258
Ensembl chr10:20,591,432...20,615,258
JBrowse link
G Pank4 pantothenate kinase 4 IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 5:172,367,593...172,384,077
Ensembl chr 5:172,367,398...172,384,269
JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO
IBA
(PMID:11923312)
PMID:21873635
RGD PMID:11923312, PMID:21873635 RGD:13792537 NCBI chr 8:62,191,722...62,219,434
Ensembl chr 8:62,193,705...62,215,293
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO
IBA
(PMID:11923312), (PMID:29754768)
PMID:21873635
RGD PMID:11923312, PMID:29754768, PMID:21873635 RGD:13792537 NCBI chr 5:138,466,298...138,470,108
Ensembl chr 5:138,466,293...138,470,096
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 IBA
ISO
PMID:21873635
(MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520)
RGD PMID:11415433, PMID:18799520, PMID:21873635 MGI:MGI:2137102, MGI:MGI:6450264, RGD:13792537 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
coenzyme A metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Crot carnitine O-octanoyltransferase IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5546000|PMID:15492013)
Ensembl
UniProt
RGD
PMID:15492013 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5546000 NCBI chr 4:22,079,837...22,116,265
Ensembl chr 4:22,081,604...22,116,265
JBrowse link
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:27,480,224...27,500,654
Ensembl chr 2:27,480,226...27,500,654
JBrowse link
G Mccc2 methylcrotonoyl-CoA carboxylase 2 IDA RGD PMID:3995077 RGD:2316862 NCBI chr 2:30,175,017...30,246,028
Ensembl chr 2:30,175,018...30,246,010
JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-CoA dehydrogenase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6895440, PMID:21873635 RGD:1598697, RGD:13792537 NCBI chr19:26,000,497...26,006,970
Ensembl chr19:26,000,497...26,006,970
JBrowse link
isopentenyl diphosphate biosynthetic process, mevalonate pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mvd mevalonate diphosphate decarboxylase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:197206, PMID:21873635 RGD:2316852, RGD:13792537 NCBI chr19:55,258,910...55,268,933
Ensembl chr19:55,258,905...55,268,951
JBrowse link
G Mvk mevalonate kinase IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:197206, PMID:21873635 GO_REF:0000041, RGD:2316852, RGD:13792537 NCBI chr12:47,904,266...47,920,457
Ensembl chr12:47,904,719...47,919,400
JBrowse link
G Pmvk phosphomevalonate kinase IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:197206, PMID:21873635 GO_REF:0000041, RGD:2316852, RGD:13792537 NCBI chr 2:188,784,329...188,793,890
Ensembl chr 2:188,784,222...188,793,895
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase ISO
IBA
(PMID:10642506)
PMID:21873635
RGD PMID:10642506, PMID:21873635 RGD:13792537 NCBI chr10:64,951,986...64,964,865
Ensembl chr10:64,952,119...64,964,862
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:32,832,001...32,868,680
Ensembl chr16:32,832,061...32,868,702
JBrowse link
G Aass aminoadipate-semialdehyde synthase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:50,152,005...50,208,935
Ensembl chr 4:50,152,452...50,200,328
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:108,936,534...108,961,322
Ensembl chr 6:108,936,664...108,959,803
JBrowse link
L-methylmalonyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcee methylmalonyl CoA epimerase ISO
IBA
(PMID:11481338)
PMID:21873635
RGD PMID:11481338, PMID:21873635 RGD:13792537 NCBI chr 1:125,229,487...125,252,692
Ensembl chr 1:125,229,469...125,252,666
JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long-chain family member 1 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr16:48,937,456...49,003,898
Ensembl chr16:48,937,456...49,003,246
JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 IGI RGD PMID:16466685 RGD:2312800 NCBI chr  X:113,596,247...113,660,024
Ensembl chr  X:113,596,239...113,659,944
JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr 1:276,240,703...276,290,012
Ensembl chr 1:276,240,703...276,290,008
JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr10:39,654,771...39,717,592
Ensembl chr10:39,655,455...39,719,312
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:137,255,868...137,260,486
Ensembl chr 5:137,255,908...137,260,483
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:265,883,353...265,887,181
Ensembl chr 1:265,883,355...265,887,226
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:91,310,690...91,338,625
Ensembl chr 8:91,310,630...91,338,843
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:85,220,941...85,287,449
Ensembl chr 8:85,259,982...85,285,983
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:234,187,490...234,296,124
Ensembl chr 2:234,189,105...234,296,145
Ensembl chr 2:234,189,105...234,296,145
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:40,373,211...40,386,643
Ensembl chr 2:40,373,211...40,386,669
JBrowse link
G LOC102549542 elongation of very long chain fatty acids protein 6-like IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:234,375,172...234,486,639
Ensembl chr 2:234,375,315...234,483,149
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl3 acyl-CoA synthetase long-chain family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:84,569,601...84,593,565
Ensembl chr 9:84,569,597...84,593,565
JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:113,596,247...113,660,024
Ensembl chr  X:113,596,239...113,659,944
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 ISO (MGI:MGI:2151970|PMID:11481335) RGD PMID:11481335 MGI:MGI:2151970 NCBI chr 7:117,566,363...117,576,735
Ensembl chr 7:117,566,368...117,576,737
JBrowse link
G Dgat2 diacylglycerol O-acyltransferase 2 ISO (MGI:MGI:2151970|PMID:11481335)
(PMID:11481335)
RGD PMID:11481335 MGI:MGI:2151970 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Far1 fatty acyl CoA reductase 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15220348)
Ensembl
RGD
PMID:15220348, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:178,351,674...178,412,838
Ensembl chr 1:178,351,680...178,431,395
JBrowse link
G Far2 fatty acyl CoA reductase 2 ISO
IBA
(PMID:15220348)
PMID:21873635
RGD PMID:15220348, PMID:21873635 RGD:13792537 NCBI chr 4:182,446,400...182,563,485
Ensembl chr 4:182,483,194...182,565,436
JBrowse link
G Them5 thioesterase superfamily member 5 ISO
IBA
(PMID:22586271)
PMID:21873635
RGD PMID:22586271, PMID:21873635 RGD:13792537 NCBI chr 2:195,582,781...195,588,000
Ensembl chr 2:195,582,781...195,588,000
JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:71,519,392...71,719,910
Ensembl chr10:71,536,533...71,719,910
JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO
IEA
(MGI:MGI:3804564|PMID:18487439)
GO_REF:0000041
RGD
UniProt
PMID:18487439 GO_REF:0000041, MGI:MGI:3804564 NCBI chr12:48,127,149...48,238,969
Ensembl chr12:48,127,149...48,238,887
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase ISO
IBA
ISS
(MGI:MGI:5501374|PMID:23746352)
PMID:21873635
(PMID:10417274), (PMID:10455107), (PMID:15003260)
GO_REF:0000024
RGD
UniProt
PMID:10417274, PMID:10455107, PMID:15003260, PMID:23746352, PMID:21873635 GO_REF:0000024, MGI:MGI:5501374, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
medium-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsm2 acyl-CoA synthetase medium-chain family member 2 ISO (PMID:19345228) RGD PMID:19345228 NCBI chr 1:189,289,957...189,329,007
Ensembl chr 1:189,289,957...189,395,276
JBrowse link
G Hsd17b4 hydroxysteroid (17-beta) dehydrogenase 4 ISO
IEA
(PMID:9089413)
GO_REF:0000107
RGD
Ensembl
PMID:9089413 GO_REF:0000107 NCBI chr18:44,810,462...44,897,677
Ensembl chr18:44,810,388...44,897,640
JBrowse link
mitochondrial acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpc1 mitochondrial pyruvate carrier 1 ISO (MGI:MGI:5428352|PMID:22628558) RGD PMID:22628558 MGI:MGI:5428352 NCBI chr 1:53,026,608...53,038,229
Ensembl chr 1:53,026,608...53,038,229
JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 ISO MGI:MGI:5635078 (MGI:MGI:5428352|PMID:22628558), (MGI:MGI:5576400|PMID:24910426) RGD PMID:22628558, PMID:24910426 MGI:MGI:5428352, MGI:MGI:5576400 NCBI chr13:83,680,527...83,700,491
Ensembl chr13:83,681,322...83,700,213
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ISO MGI:MGI:2182095|MGI:MGI:2386703 (MGI:MGI:3817854|PMID:18586888) RGD PMID:18586888 MGI:MGI:3817854 NCBI chr  X:37,329,779...37,343,410
Ensembl chr  X:37,329,779...37,343,410
JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 ISO (MGI:MGI:6450264|PMID:18799520) RGD PMID:18799520 MGI:MGI:6450264 NCBI chr19:46,455,745...46,470,070
Ensembl chr19:46,455,761...46,482,050
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5487511|PMID:22195962)
Ensembl
RGD
PMID:22195962 GO_REF:0000107, MGI:MGI:5487511 NCBI chr 3:58,530,870...58,561,494
Ensembl chr 3:58,530,870...58,558,027
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr10:82,838,270...82,852,758
Ensembl chr10:82,839,153...82,852,660
JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 ISO (PMID:22865452) RGD PMID:22865452 NCBI chr  X:62,836,131...62,904,114
Ensembl chr  X:62,836,131...62,903,554
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3692363|PMID:16606348)
(PMID:21852536)
Ensembl
UniProt
RGD
PMID:16606348, PMID:21852536 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3692363 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha ISO MGI:MGI:2389489 (MGI:MGI:3628986|PMID:16636270), (MGI:MGI:3629421|PMID:16734431) RGD PMID:16636270, PMID:16734431 MGI:MGI:3628986, MGI:MGI:3629421 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link
succinyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot4 acyl-CoA thioesterase 4 ISO (PMID:16940157)
(MGI:MGI:3663233|PMID:16940157)
RGD PMID:16940157 MGI:MGI:3663233 NCBI chr 6:107,517,668...107,522,952
Ensembl chr 6:107,517,668...107,522,952
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISS
ISO
GO_REF:0000024
(PMID:10806400)
UniProt
RGD
PMID:10806400 GO_REF:0000024 NCBI chr 6:108,936,534...108,961,322
Ensembl chr 6:108,936,664...108,959,803
JBrowse link
G Ogdh oxoglutarate dehydrogenase IDA
ISO
(PMID:24495017), (PMID:29211711) RGD PMID:24495017, PMID:29211711, PMID:9712727 RGD:2306877 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17403370, PMID:21873635 RGD:2306915, RGD:13792537 NCBI chr15:55,461,695...55,516,954
Ensembl chr15:55,461,695...55,516,952
JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha IDA RGD PMID:7430155, PMID:17403370 RGD:2306879, RGD:2306915 NCBI chr 4:101,181,315...101,210,692
Ensembl chr 4:101,180,404...101,210,746
JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7430155, PMID:21873635, PMID:17403370 RGD:2306879, RGD:13792537, RGD:2306915 NCBI chr 4:127,552,100...127,824,970
Ensembl chr 4:127,552,101...127,824,970
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kynu kynureninase IDA RGD PMID:7236232 RGD:2303721 NCBI chr 3:28,416,926...28,566,939
Ensembl chr 3:28,416,954...28,566,928
JBrowse link
G Tdo2 tryptophan 2,3-dioxygenase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7236232, PMID:21873635 RGD:2303721, RGD:13792537 NCBI chr 2:180,897,059...180,914,919
Ensembl chr 2:180,897,011...180,914,940
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP binding cassette subfamily D member 1 ISO
ISS
(PMID:23671276)
GO_REF:0000024
RGD
UniProt
PMID:23671276 GO_REF:0000024 NCBI chr  X:157,073,860...157,095,652
Ensembl chr  X:157,072,736...157,095,274
JBrowse link
very long-chain fatty-acyl-CoA metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b4 hydroxysteroid (17-beta) dehydrogenase 4 ISO
IEA
(PMID:9482850)
GO_REF:0000107
RGD
Ensembl
PMID:9482850 GO_REF:0000107 NCBI chr18:44,810,462...44,897,677
Ensembl chr18:44,810,388...44,897,640
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      organic substance metabolic process 11660
        organophosphate metabolic process 941
          nucleoside phosphate metabolic process 511
            nucleoside bisphosphate metabolic process 111
              nucleoside bisphosphate biosynthetic process + 46
              nucleoside bisphosphate catabolic process + 5
              purine nucleoside bisphosphate metabolic process + 111
              ribonucleoside bisphosphate metabolic process + 111
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      nitrogen compound metabolic process 10390
        cellular nitrogen compound metabolic process 6696
          nucleobase-containing compound metabolic process 5489
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 511
                nucleoside bisphosphate metabolic process 111
                  nucleoside bisphosphate biosynthetic process + 46
                  nucleoside bisphosphate catabolic process + 5
                  purine nucleoside bisphosphate metabolic process + 111
                  ribonucleoside bisphosphate metabolic process + 111
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.