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ONTOLOGY REPORT - ANNOTATIONS


Term:ribonucleoside bisphosphate biosynthetic process
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Accession:GO:0034030 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.
Synonyms:exact_synonym: ribonucleoside bisphosphate anabolism;   ribonucleoside bisphosphate biosynthesis;   ribonucleoside bisphosphate formation;   ribonucleoside bisphosphate synthesis


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3'-phosphoadenosine 5'-phosphosulfate biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ISO
IBA
(MGI:MGI:2448448|PMID:12414806)
PMID:21873635
(PMID:14747722), (PMID:23207770)
RGD PMID:12414806, PMID:14747722, PMID:23207770, PMID:21873635 MGI:MGI:2448448, RGD:13792537 NCBI chr 2:236,605,695...236,680,772
Ensembl chr 2:236,605,695...236,680,772
JBrowse link
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:251,145,264...251,230,716
Ensembl chr 1:251,145,253...251,230,715
JBrowse link
acetyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Acly ATP citrate lyase NAS
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:1371749)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:1371749, PMID:2295639, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:631761, RGD:13792537 NCBI chr10:88,392,248...88,442,845
Ensembl chr10:88,392,248...88,442,845
JBrowse link
G Acss1 acyl-CoA synthetase short-chain family member 1 ISO (MGI:MGI:2151932|PMID:11150295)
(PMID:16788062)
RGD PMID:11150295, PMID:16788062 MGI:MGI:2151932 NCBI chr 3:146,420,346...146,470,293
Ensembl chr 3:146,420,346...146,470,293
JBrowse link
G Acss2 acyl-CoA synthetase short-chain family member 2 ISO (MGI:MGI:2151932|PMID:11150295) RGD PMID:11150295 MGI:MGI:2151932 NCBI chr 3:151,032,925...151,075,856
Ensembl chr 3:151,032,952...151,075,856
JBrowse link
G Mlycd malonyl-CoA decarboxylase IDA
IBA
ISO
IEA
PMID:21873635
(PMID:10417274), (PMID:10455107), (PMID:9869665)
GO_REF:0000041
RGD
UniProt
PMID:9869665, PMID:10417274, PMID:10455107, PMID:17316539, PMID:21873635 GO_REF:0000041, RGD:1600790, RGD:13792537 NCBI chr19:52,032,950...52,048,773
Ensembl chr19:52,032,886...52,048,753
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO (PMID:29754768) RGD PMID:29754768 NCBI chr 5:138,466,298...138,470,108
Ensembl chr 5:138,466,293...138,470,096
JBrowse link
acetyl-CoA biosynthetic process from acetate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acss1 acyl-CoA synthetase short-chain family member 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:146,420,346...146,470,293
Ensembl chr 3:146,420,346...146,470,293
JBrowse link
acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlat dihydrolipoamide S-acetyltransferase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7487891, PMID:21873635 RGD:1599112, RGD:13792537 NCBI chr 8:55,062,549...55,087,832
Ensembl chr 8:55,062,551...55,087,832
JBrowse link
G Dld dihydrolipoamide dehydrogenase IDA RGD PMID:7487891 RGD:1599112 NCBI chr 6:50,597,677...50,618,694
Ensembl chr 6:50,597,677...50,618,694
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 IDA
IBA
ISO
IEA
PMID:21873635
(PMID:19081061)
GO_REF:0000002
RGD
InterPro
PMID:19081061, PMID:7487891, PMID:21873635 GO_REF:0000002, RGD:1599112, RGD:13792537 NCBI chr  X:37,329,779...37,343,410
Ensembl chr  X:37,329,779...37,343,410
JBrowse link
G Pdha1l1 pyruvate dehydrogenase (lipoamide) alpha 1-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:88,344,440...88,347,335
Ensembl chr16:88,345,247...88,347,369
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:7487891, PMID:21873635 RGD:1599112, RGD:13792537 NCBI chr 2:246,736,449...246,737,997
Ensembl chr 2:246,736,459...246,737,997
JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta IDA
IBA
ISO
IEA
PMID:21873635
(PMID:19081061)
GO_REF:0000107
RGD
Ensembl
PMID:19081061, PMID:7487891, PMID:21873635 GO_REF:0000107, RGD:1599112, RGD:13792537 NCBI chr15:18,540,826...18,546,855
Ensembl chr15:18,539,210...18,546,854
JBrowse link
G Pdhx pyruvate dehydrogenase complex, component X IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:92,910,300...92,933,725
Ensembl chr 3:92,909,725...92,969,050
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 TAS RGD PMID:12435272 RGD:729541 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
coenzyme A biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Acot7 acyl-CoA thioesterase 7 ISO (PMID:10578051) RGD PMID:10578051 NCBI chr 5:169,357,582...169,450,215
Ensembl chr 5:169,357,517...169,450,219
JBrowse link
G Ak6 adenylate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:30,664,407...30,676,464
Ensembl chr 2:30,664,217...30,676,464
Ensembl chr20:30,664,217...30,676,464
JBrowse link
G Coasy Coenzyme A synthase ISO
IBA
(MGI:MGI:2181228|PMID:11980892)
PMID:21873635
(PMID:11923312)
RGD PMID:11923312, PMID:11980892, PMID:21873635 MGI:MGI:2181228, RGD:13792537 NCBI chr10:88,992,413...88,996,677
Ensembl chr10:88,992,487...88,996,676
JBrowse link
G Dcakd dephospho-CoA kinase domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,095,601...91,126,733
Ensembl chr10:91,095,545...91,122,018
JBrowse link
G NEWGENE_1306267 phosphopantothenoylcysteine decarboxylase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:62,086,821...62,109,164
Ensembl chr 8:62,193,705...62,215,293
Ensembl chr 8:62,193,705...62,215,293
JBrowse link
G Pank1 pantothenate kinase 1 ISO
IBA
MGI:MGI:2176050|MGI:MGI:4462018 (MGI:MGI:3607004|PMID:16040613), (MGI:MGI:4461354|PMID:20559429), (MGI:MGI:5446555|PMID:22815849)
PMID:21873635
RGD PMID:16040613, PMID:20559429, PMID:22815849, PMID:21873635 MGI:MGI:3607004, MGI:MGI:4461354, MGI:MGI:5446555, RGD:13792537 NCBI chr 1:253,115,400...253,189,643
Ensembl chr 1:253,119,112...253,185,533
JBrowse link
G Pank2 pantothenate kinase 2 ISO
IBA
MGI:MGI:2176050|MGI:MGI:5446719 (MGI:MGI:5446555|PMID:22815849)
PMID:21873635
RGD PMID:22815849, PMID:21873635 MGI:MGI:5446555, RGD:13792537 NCBI chr 3:123,807,911...123,841,797
Ensembl chr 3:123,807,952...123,841,797
JBrowse link
G Pank3 pantothenate kinase 3 ISO
IBA
(MGI:MGI:3607004|PMID:16040613)
(PMID:20797618), (PMID:30927326)
PMID:21873635
RGD PMID:16040613, PMID:20797618, PMID:30927326, PMID:21873635 MGI:MGI:3607004, RGD:13792537 NCBI chr10:20,591,432...20,615,258
Ensembl chr10:20,591,432...20,615,258
JBrowse link
G Pank4 pantothenate kinase 4 IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 5:172,367,593...172,384,077
Ensembl chr 5:172,367,398...172,384,269
JBrowse link
G Ppcdc phosphopantothenoylcysteine decarboxylase ISO
IBA
(PMID:11923312)
PMID:21873635
RGD PMID:11923312, PMID:21873635 RGD:13792537 NCBI chr 8:62,191,722...62,219,434
Ensembl chr 8:62,193,705...62,215,293
JBrowse link
G Ppcs phosphopantothenoylcysteine synthetase ISO
IBA
(PMID:11923312), (PMID:29754768)
PMID:21873635
RGD PMID:11923312, PMID:29754768, PMID:21873635 RGD:13792537 NCBI chr 5:138,466,298...138,470,108
Ensembl chr 5:138,466,293...138,470,096
JBrowse link
fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcdh glutaryl-CoA dehydrogenase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6895440, PMID:21873635 RGD:1598697, RGD:13792537 NCBI chr19:26,000,497...26,006,970
Ensembl chr19:26,000,497...26,006,970
JBrowse link
long-chain fatty-acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acsl1 acyl-CoA synthetase long-chain family member 1 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr16:48,937,456...49,003,898
Ensembl chr16:48,937,456...49,003,246
JBrowse link
G Acsl4 acyl-CoA synthetase long-chain family member 4 IGI RGD PMID:16466685 RGD:2312800 NCBI chr  X:113,596,247...113,660,024
Ensembl chr  X:113,596,239...113,659,944
JBrowse link
G Acsl5 acyl-CoA synthetase long-chain family member 5 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr 1:276,240,703...276,290,012
Ensembl chr 1:276,240,703...276,290,008
JBrowse link
G Acsl6 acyl-CoA synthetase long-chain family member 6 IGI
IBA
PMID:21873635 RGD
GO_Central
PMID:16466685, PMID:21873635 RGD:2312800, RGD:13792537 NCBI chr10:39,654,771...39,717,592
Ensembl chr10:39,655,455...39,719,312
JBrowse link
G Elovl1 ELOVL fatty acid elongase 1 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 5:137,255,868...137,260,486
Ensembl chr 5:137,255,908...137,260,483
JBrowse link
G Elovl3 ELOVL fatty acid elongase 3 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:265,883,353...265,887,181
Ensembl chr 1:265,883,355...265,887,226
JBrowse link
G Elovl4 ELOVL fatty acid elongase 4 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:91,310,690...91,338,625
Ensembl chr 8:91,310,630...91,338,843
JBrowse link
G Elovl5 ELOVL fatty acid elongase 5 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:85,220,941...85,287,449
Ensembl chr 8:85,259,982...85,285,983
JBrowse link
G Elovl6 ELOVL fatty acid elongase 6 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:234,187,490...234,296,124
Ensembl chr 2:234,189,105...234,296,145
Ensembl chr 2:234,189,105...234,296,145
JBrowse link
G Elovl7 ELOVL fatty acid elongase 7 IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:40,373,211...40,386,643
Ensembl chr 2:40,373,211...40,386,669
JBrowse link
G LOC102549542 elongation of very long chain fatty acids protein 6-like IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 2:234,375,172...234,486,639
Ensembl chr 2:234,375,315...234,483,149
JBrowse link
malonyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acaca acetyl-CoA carboxylase alpha IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:71,519,392...71,719,910
Ensembl chr10:71,536,533...71,719,910
JBrowse link
G Acacb acetyl-CoA carboxylase beta ISO
IEA
(MGI:MGI:3804564|PMID:18487439)
GO_REF:0000041
RGD
UniProt
PMID:18487439 GO_REF:0000041, MGI:MGI:3804564 NCBI chr12:48,127,149...48,238,969
Ensembl chr12:48,127,149...48,238,887
JBrowse link
mitochondrial acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpc1 mitochondrial pyruvate carrier 1 ISO (MGI:MGI:5428352|PMID:22628558) RGD PMID:22628558 MGI:MGI:5428352 NCBI chr 1:53,026,608...53,038,229
Ensembl chr 1:53,026,608...53,038,229
JBrowse link
G Mpc2 mitochondrial pyruvate carrier 2 ISO MGI:MGI:5635078 (MGI:MGI:5428352|PMID:22628558), (MGI:MGI:5576400|PMID:24910426) RGD PMID:22628558, PMID:24910426 MGI:MGI:5428352, MGI:MGI:5576400 NCBI chr13:83,680,527...83,700,491
Ensembl chr13:83,681,322...83,700,213
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ISO MGI:MGI:2182095|MGI:MGI:2386703 (MGI:MGI:3817854|PMID:18586888) RGD PMID:18586888 MGI:MGI:3817854 NCBI chr  X:37,329,779...37,343,410
Ensembl chr  X:37,329,779...37,343,410
JBrowse link
propionyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:17371050) RGD PMID:17371050 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
regulation of acetyl-CoA biosynthetic process from pyruvate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdk1 pyruvate dehydrogenase kinase 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:5487511|PMID:22195962)
Ensembl
RGD
PMID:22195962 GO_REF:0000107, MGI:MGI:5487511 NCBI chr 3:58,530,870...58,561,494
Ensembl chr 3:58,530,870...58,558,027
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr10:82,838,270...82,852,758
Ensembl chr10:82,839,153...82,852,660
JBrowse link
G Pdk3 pyruvate dehydrogenase kinase 3 ISO (PMID:22865452) RGD PMID:22865452 NCBI chr  X:62,836,131...62,904,114
Ensembl chr  X:62,836,131...62,903,554
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3692363|PMID:16606348)
(PMID:21852536)
Ensembl
UniProt
RGD
PMID:16606348, PMID:21852536 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3692363 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
regulation of acyl-CoA biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snca synuclein alpha ISO MGI:MGI:2389489 (MGI:MGI:3628986|PMID:16636270), (MGI:MGI:3629421|PMID:16734431) RGD PMID:16636270, PMID:16734431 MGI:MGI:3628986, MGI:MGI:3629421 NCBI chr 4:90,782,412...90,883,236
Ensembl chr 4:90,782,374...90,882,285
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      organic substance metabolic process 11651
        organophosphate metabolic process 941
          nucleoside phosphate metabolic process 511
            nucleoside bisphosphate metabolic process 111
              nucleoside bisphosphate biosynthetic process 46
                ribonucleoside bisphosphate biosynthetic process 46
                  acyl-CoA biosynthetic process + 34
                  coenzyme A biosynthetic process + 12
                  purine ribonucleoside bisphosphate biosynthetic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 511
                nucleoside bisphosphate metabolic process 111
                  nucleoside bisphosphate biosynthetic process 46
                    ribonucleoside bisphosphate biosynthetic process 46
                      acyl-CoA biosynthetic process + 34
                      coenzyme A biosynthetic process + 12
                      purine ribonucleoside bisphosphate biosynthetic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.