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ONTOLOGY REPORT - ANNOTATIONS


Term:high-density lipoprotein particle assembly
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Accession:GO:0034380 term browser browse the term
Definition:The non-covalent aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle.
Synonyms:exact_synonym: HDL assembly


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high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (PMID:10431236), (PMID:14754908), (PMID:17305370) RGD PMID:10431236, PMID:14754908, PMID:17305370 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 ISO
IEA
ISS
(PMID:14570867)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
Alzheimers_University_of_Toronto
PMID:14570867 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:12,742,433...12,762,423
Ensembl chr 7:12,742,433...12,762,341
JBrowse link
G Apoa1 apolipoprotein A1 ISO
IBA
(PMID:190223)
PMID:21873635
RGD PMID:190223, PMID:21873635 RGD:13792537 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Apoa2 apolipoprotein A2 ISO
IBA
(PMID:218942)
PMID:21873635
RGD PMID:218942, PMID:21873635 RGD:13792537 NCBI chr13:89,596,872...89,598,805
Ensembl chr13:89,597,138...89,598,802
JBrowse link
G Apoa4 apolipoprotein A4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,536,983...50,539,371
Ensembl chr 8:50,537,009...50,539,376
JBrowse link
G Apoa5 apolipoprotein A5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:50,559,079...50,561,720
Ensembl chr 8:50,559,126...50,561,736
JBrowse link
G Apoe apolipoprotein E IEA
ISO
ISS
GO_REF:0000107
(PMID:14754908), (PMID:17305370)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14754908, PMID:17305370 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Apom apolipoprotein M ISO
IBA
(MGI:MGI:3575626|PMID:15793583)
PMID:21873635
RGD PMID:15793583, PMID:21873635 MGI:MGI:3575626, RGD:13792537 NCBI chr20:5,120,473...5,123,073
Ensembl chr20:5,120,474...5,123,073
JBrowse link
positive regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO (MGI:MGI:5427333|PMID:22179027) RGD PMID:22179027 MGI:MGI:5427333 NCBI chr 5:69,857,717...69,983,042
Ensembl chr 5:69,857,771...69,983,015
JBrowse link
G Nr1h2 nuclear receptor subfamily 1, group H, member 2 ISO (MGI:MGI:3720271|PMID:17657314), (MGI:MGI:3794353|PMID:16825483) RGD PMID:16825483, PMID:17657314 MGI:MGI:3720271, MGI:MGI:3794353 NCBI chr 1:100,554,577...100,559,896
Ensembl chr 1:100,554,544...100,559,942
JBrowse link
regulation of high-density lipoprotein particle assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lcat lecithin cholesterol acyltransferase ISO (MGI:MGI:3848791|PMID:19065001) RGD PMID:19065001 MGI:MGI:3848791 NCBI chr19:37,913,333...37,916,799
Ensembl chr19:37,913,336...37,916,813
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    regulation of biological process 13071
      regulation of plasma lipoprotein particle levels 67
        plasma lipoprotein particle assembly 21
          high-density lipoprotein particle assembly 10
            apolipoprotein E recycling 0
            positive regulation of high-density lipoprotein particle assembly 2
            regulation of high-density lipoprotein particle assembly + 3
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          cellular component assembly 2967
            protein-containing complex assembly 1603
              protein-lipid complex assembly 25
                plasma lipoprotein particle assembly 21
                  high-density lipoprotein particle assembly 10
                    apolipoprotein E recycling 0
                    positive regulation of high-density lipoprotein particle assembly 2
                    regulation of high-density lipoprotein particle assembly + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.