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ONTOLOGY REPORT - ANNOTATIONS


Term:tooth mineralization
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Accession:GO:0034505 term browser browse the term
Definition:The process in which calcium salts are deposited into calcareous tooth structures such as dental enamel, dentin and cementum.
Synonyms:exact_synonym: tooth calcification


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tooth mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked ISO (PMID:1483698)
(MGI:MGI:2149207|PMID:11406633)
RGD PMID:1483698, PMID:11406633 MGI:MGI:2149207 NCBI chr  X:26,439,197...26,450,495
Ensembl chr  X:26,439,197...26,450,495
JBrowse link
G Col1a1 collagen type I alpha 1 chain ISO (PMID:17118335) RGD PMID:17118335 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Tspear thrombospondin-type laminin G domain and EAR repeats ISO (PMID:27736875) RGD PMID:27736875 NCBI chr20:11,501,510...11,529,210
Ensembl chr20:11,501,925...11,528,332
JBrowse link
cementum mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated IEP RGD PMID:17043865 RGD:2316162 NCBI chr 5:156,086,496...156,141,513
Ensembl chr 5:156,086,497...156,141,537
JBrowse link
G Hacd1 3-hydroxyacyl-CoA dehydratase 1 ISO (PMID:25263524) RGD PMID:25263524 NCBI chr17:81,173,238...81,196,012
Ensembl chr17:81,173,713...81,187,739
JBrowse link
dentin mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5469811|PMID:23174213) RGD PMID:23174213 MGI:MGI:5469811 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
enamel mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amelx amelogenin, X-linked ISO (PMID:1916828)
(PMID:21653221)
RGD PMID:1916828, PMID:21653221 NCBI chr  X:26,439,197...26,450,495
Ensembl chr  X:26,439,197...26,450,495
JBrowse link
G Cnnm4 cyclin and CBS domain divalent metal cation transport mediator 4 ISO (MGI:MGI:5559016|PMID:24339795) RGD PMID:24339795 MGI:MGI:5559016 NCBI chr 9:43,049,587...43,088,690
Ensembl chr 9:43,049,587...43,088,702
JBrowse link
G Fam20a FAM20A, golgi associated secretory pathway pseudokinase ISO
IBA
MGI:MGI:5432376 (MGI:MGI:5432245|PMID:22732358)
PMID:21873635
(PMID:21549343), (PMID:21990045), (PMID:23468644)
RGD PMID:21549343, PMID:21990045, PMID:22732358, PMID:23468644, PMID:21873635 MGI:MGI:5432245, RGD:13792537 NCBI chr10:97,962,467...98,017,171
Ensembl chr10:97,962,693...98,018,014
JBrowse link
G Fam20c FAM20C, golgi associated secretory pathway kinase ISO
IBA
MGI:MGI:5432377 (MGI:MGI:5432245|PMID:22732358)
PMID:21873635
RGD PMID:22732358, PMID:21873635 MGI:MGI:5432245, RGD:13792537 NCBI chr12:17,913,771...17,972,733
Ensembl chr12:17,913,767...17,972,737
JBrowse link
G Foxo1 forkhead box O1 IEP RGD PMID:25183529 RGD:10044263 NCBI chr 2:141,451,234...141,527,016
Ensembl chr 2:141,451,234...141,527,016
JBrowse link
G Itgb6 integrin subunit beta 6 ISO MGI:MGI:1926484 (MGI:MGI:5507902|PMID:23264742) RGD PMID:23264742 MGI:MGI:5507902 NCBI chr 3:46,652,624...46,775,362
Ensembl chr 3:46,652,623...46,726,958
JBrowse link
G Msx2 msh homeobox 2 ISO
IEA
MGI:MGI:1926381 (MGI:MGI:1355063|PMID:10742104)
GO_REF:0000107
RGD
Ensembl
PMID:10742104 GO_REF:0000107, MGI:MGI:1355063 NCBI chr17:11,683,862...11,689,527
Ensembl chr17:11,683,862...11,689,527
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 ISO MGI:MGI:3814719 (MGI:MGI:3814115|PMID:18703497) RGD PMID:18703497 MGI:MGI:3814115 NCBI chr 8:48,094,233...48,198,499
Ensembl chr 8:48,094,673...48,157,305
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO MGI:MGI:1857774 (MGI:MGI:3843118|PMID:19320717) RGD PMID:19320717 MGI:MGI:3843118 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Stim1 stromal interaction molecule 1 ISO
ISS
(PMID:24621671)
GO_REF:0000024
RGD
UniProt
PMID:24621671 GO_REF:0000024 NCBI chr 1:167,373,894...167,533,412
Ensembl chr 1:167,373,678...167,533,420
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2179136 (MGI:MGI:3848106|PMID:19233155)
GO_REF:0000024
RGD
UniProt
PMID:19233155 GO_REF:0000024, MGI:MGI:3848106 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:5469811|PMID:23174213) RGD PMID:23174213 MGI:MGI:5469811 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Wdr72 WD repeat domain 72 ISO MGI:MGI:4363147|MGI:MGI:5913851 (MGI:MGI:5605934|PMID:25008349), (MGI:MGI:5906533|PMID:26247047) RGD PMID:25008349, PMID:26247047 MGI:MGI:5605934, MGI:MGI:5906533 NCBI chr 8:80,965,734...81,125,710
Ensembl chr 8:80,965,255...81,039,246
JBrowse link
negative regulation of tooth mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspn asporin ISO (MGI:MGI:3722035|PMID:17522060) RGD PMID:17522060 MGI:MGI:3722035 NCBI chr17:14,655,958...14,681,355
Ensembl chr17:14,656,009...14,679,409
JBrowse link
G Bcor BCL6 co-repressor ISO (PMID:19578371) RGD PMID:19578371 NCBI chr  X:11,570,155...11,692,022
Ensembl chr  X:11,648,989...11,691,099
JBrowse link
positive regulation of enamel mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amtn amelotin ISO
IBA
ISS
(MGI:MGI:5613837|PMID:25407797)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:25407797, PMID:21873635 GO_REF:0000024, MGI:MGI:5613837, RGD:13792537 NCBI chr14:21,282,488...21,301,966
Ensembl chr14:21,286,510...21,299,068
JBrowse link
G Dspp dentin sialophosphoprotein ISO (MGI:MGI:3603472|PMID:16014627) RGD PMID:16014627 MGI:MGI:3603472 NCBI chr14:6,926,972...6,933,079
Ensembl chr14:6,926,976...6,933,070
JBrowse link
G Enam enamelin ISO
IBA
MGI:MGI:3796583 (MGI:MGI:5647983|PMID:24603688)
PMID:21873635
RGD PMID:24603688, PMID:21873635 MGI:MGI:5647983, RGD:13792537 NCBI chr14:21,194,635...21,219,529
Ensembl chr14:21,194,664...21,219,454
JBrowse link
G Odaph odontogenesis associated phosphoprotein ISO
IBA
ISS
(PMID:22901946)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22901946, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr14:17,575,295...17,583,214
Ensembl chr14:17,575,758...17,582,823
JBrowse link
positive regulation of tooth mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISO
IEA
ISS
(PMID:19578371)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19578371 GO_REF:0000024, GO_REF:0000107 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Wnt6 Wnt family member 6 ISO (PMID:20113781) RGD PMID:20113781 NCBI chr 9:82,033,543...82,047,172
Ensembl chr 9:82,033,543...82,047,166
JBrowse link
regulation of enamel mineralization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:4453947|PMID:20102707) RGD PMID:20102707 MGI:MGI:4453947 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 ISO
IEA
(MGI:MGI:3603472|PMID:16014627)
GO_REF:0000107
RGD
Ensembl
PMID:16014627 GO_REF:0000107, MGI:MGI:3603472 NCBI chr14:6,889,851...6,923,961
Ensembl chr14:6,889,856...6,900,733
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    biomineralization 173
      biomineral tissue development 171
        tooth mineralization 27
          cementum mineralization 2
          dentin mineralization 1
          enamel mineralization + 19
          negative regulation of tooth mineralization + 2
          positive regulation of tooth mineralization + 6
          regulation of tooth mineralization + 10
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            animal organ development 4035
              animal organ morphogenesis 1151
                odontogenesis 150
                  tooth mineralization 27
                    cementum mineralization 2
                    dentin mineralization 1
                    enamel mineralization + 19
                    negative regulation of tooth mineralization + 2
                    positive regulation of tooth mineralization + 6
                    regulation of tooth mineralization + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.