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ONTOLOGY REPORT - ANNOTATIONS


Term:response to tumor necrosis factor
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Accession:GO:0034612 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
Synonyms:exact_synonym: response to TNF


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response to tumor necrosis factor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07044631.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:13,988,442...14,001,269 JBrowse link
G Adam10 ADAM metallopeptidase domain 10 ISO (PMID:11831872) RGD PMID:11831872 NCBI chr 8:77,107,355...77,237,483
Ensembl chr 8:77,107,536...77,237,483
JBrowse link
G Adam9 ADAM metallopeptidase domain 9 ISO (PMID:11831872) RGD PMID:11831872 NCBI chr16:71,810,377...71,887,926
Ensembl chr16:71,810,377...71,887,926
JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 IEP RGD PMID:18433458 RGD:2315954 NCBI chr 3:5,519,921...5,558,390
Ensembl chr 3:5,519,990...5,558,166
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10604883)
GO_REF:0000024
RGD
UniProt
PMID:10604883 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Aff3 AF4/FMR2 family, member 3 ISO (PMID:20444755) RGD PMID:20444755 NCBI chr 9:44,837,979...45,291,964
Ensembl chr 9:44,839,960...45,292,047
JBrowse link
G Apoe apolipoprotein E IEP RGD PMID:12934668 RGD:12904642 NCBI chr 1:80,612,894...80,616,820
Ensembl chr 1:80,612,895...80,617,057
JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:18830614 RGD:8655602 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Casp8 caspase 8 ISO (PMID:10521396) RGD PMID:10521396 NCBI chr 9:65,614,142...65,662,624
Ensembl chr 9:65,614,142...65,662,106
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP RGD PMID:15855648 RGD:11526154 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO (MGI:MGI:52556|PMID:1375672) RGD PMID:1375672 MGI:MGI:52556 NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
JBrowse link
G Cd14 CD14 molecule IMP RGD PMID:10777809 RGD:7193332 NCBI chr18:29,560,341...29,562,290
Ensembl chr18:29,560,365...29,562,153
JBrowse link
G Chi3l1 chitinase 3 like 1 ISO
ISS
(PMID:16234240)
GO_REF:0000024
RGD
UniProt
PMID:16234240 GO_REF:0000024 NCBI chr13:51,022,844...51,030,797
Ensembl chr13:51,022,681...51,030,802
JBrowse link
G Cxcl16 C-X-C motif chemokine ligand 16 ISO (PMID:18373975) RGD PMID:18373975 NCBI chr10:57,060,005...57,064,600
Ensembl chr10:57,060,007...57,064,600
JBrowse link
G Endog endonuclease G ISO MGI:MGI:3034030|MGI:MGI:3514265 (MGI:MGI:3029597|PMID:14663139) RGD PMID:14663139 MGI:MGI:3029597 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Ep300 E1A binding protein p300 IEP RGD PMID:18438857 RGD:2312262 NCBI chr 7:122,818,194...122,889,055
Ensembl chr 7:122,818,975...122,861,296
JBrowse link
G Gch1 GTP cyclohydrolase 1 ISO (PMID:9445252) RGD PMID:9445252 NCBI chr15:23,935,011...23,968,971
Ensembl chr15:23,934,585...23,969,011
JBrowse link
G Ggt1 gamma-glutamyltransferase 1 IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:16973162, PMID:21873635 RGD:1601301, RGD:13792537 NCBI chr20:14,019,723...14,045,781
Ensembl chr20:14,019,723...14,025,068
JBrowse link
G Ggt5 gamma-glutamyltransferase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:13,988,444...14,001,296 JBrowse link
G Ggt7 gamma-glutamyltransferase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,005,960...151,029,941
Ensembl chr 3:151,006,531...151,032,302
JBrowse link
G Gss glutathione synthetase IEP RGD PMID:16011481 RGD:2316556 NCBI chr 3:151,076,254...151,106,557
Ensembl chr 3:151,076,254...151,106,557
JBrowse link
G Igbp1 immunoglobulin binding protein 1 ISO (PMID:17438131) RGD PMID:17438131 NCBI chr  X:70,322,764...70,345,005
Ensembl chr  X:70,322,755...70,345,005
JBrowse link
G Insr insulin receptor IMP RGD PMID:17761893 RGD:2307032 NCBI chr12:1,682,527...1,816,414
Ensembl chr12:1,680,957...1,816,414
JBrowse link
G Jak2 Janus kinase 2 ISO (PMID:8609418) RGD PMID:8609418 NCBI chr 1:247,398,667...247,457,521
Ensembl chr 1:247,398,598...247,458,509
JBrowse link
G Map2k7 mitogen activated protein kinase kinase 7 IEA
ISO
GO_REF:0000107
(PMID:9535930)
Ensembl
RGD
PMID:9535930 GO_REF:0000107 NCBI chr12:2,546,278...2,555,310
Ensembl chr12:2,548,218...2,555,164
JBrowse link
G Map4k3 mitogen-activated protein kinase kinase kinase kinase 3 IEA
ISO
GO_REF:0000107
(PMID:9275185)
Ensembl
RGD
PMID:9275185 GO_REF:0000107 NCBI chr 6:3,276,732...3,444,519
Ensembl chr 6:3,276,738...3,444,519
JBrowse link
G Mbp myelin basic protein IEP RGD PMID:23735240 RGD:7327194 NCBI chr18:79,326,738...79,437,310
Ensembl chr18:79,326,738...79,437,310
JBrowse link
G Mmp3 matrix metallopeptidase 3 IEP RGD PMID:17704356 RGD:2325928 NCBI chr 8:5,676,608...5,698,579
Ensembl chr 8:5,676,665...5,698,579
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:17704356 RGD:2325928 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 IEP RGD PMID:24136224 RGD:13782046 NCBI chr 8:106,317,038...106,429,535
Ensembl chr 8:106,317,124...106,429,522
JBrowse link
G Nos2 nitric oxide synthase 2 IMP RGD PMID:19802525 RGD:4891376 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Nub1 negative regulator of ubiquitin-like proteins 1 ISO (PMID:16707496) RGD PMID:16707496 NCBI chr 4:6,950,870...6,981,400
Ensembl chr 4:6,951,478...6,978,073
JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 IEP RGD PMID:17704356 RGD:2325928 NCBI chr13:67,351,230...67,356,920
Ensembl chr13:67,351,087...67,359,335
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (PMID:10521396) RGD PMID:10521396 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Rps6kb1 ribosomal protein S6 kinase B1 IMP PMID:18952604 UniProt PMID:18952604 RGD:8554230 NCBI chr10:73,824,200...73,865,503
Ensembl chr10:73,824,202...73,865,364
JBrowse link
G Sphk1 sphingosine kinase 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23935096)
UniProt
Ensembl
RGD
PMID:23935096 GO_REF:0000024, GO_REF:0000107 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A ISO (MGI:MGI:4413614|PMID:19940926) RGD PMID:19940926 MGI:MGI:4413614 NCBI chr13:25,778,306...25,835,802
Ensembl chr13:25,778,317...25,835,957
JBrowse link
G Trim32 tripartite motif-containing 32 ISO (MGI:MGI:5009403|PMID:16816390) RGD PMID:16816390 MGI:MGI:5009403 NCBI chr 5:81,431,554...81,449,023
Ensembl chr 5:81,431,600...81,442,451
JBrowse link
G Ubd ubiquitin D IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:16782901)
(PMID:17889673)
Ensembl
RGD
PMID:16782901, PMID:17889673, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr20:1,876,175...1,878,126
Ensembl chr20:1,876,173...1,897,814
JBrowse link
G Wfdc21 WAP four-disulfide core domain 21 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:71,047,326...71,053,195
Ensembl chr10:71,047,310...71,053,191
JBrowse link
G Ythdc2 YTH domain containing 2 ISO (PMID:21559518) RGD PMID:21559518 NCBI chr 1:182,072,386...182,141,399
Ensembl chr 1:182,085,899...182,140,570
JBrowse link
cellular response to tumor necrosis factor term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb1a ATP binding cassette subfamily B member 1A IEP RGD PMID:20300455 RGD:39456124 NCBI chr 4:22,339,829...22,517,642
Ensembl chr 4:22,133,521...22,425,515
JBrowse link
G Abcb1b ATP-binding cassette, subfamily B (MDR/TAP), member 1B IEP RGD PMID:19088456 RGD:4890037 NCBI chr 4:22,225,123...22,307,577
Ensembl chr 4:22,133,521...22,425,515
JBrowse link
G Abcc2 ATP binding cassette subfamily C member 2 IEP RGD PMID:20702406 RGD:11081005 NCBI chr 1:263,554,426...263,612,556
Ensembl chr 1:263,554,453...263,613,252
JBrowse link
G Acod1 aconitate decarboxylase 1 ISO (MGI:MGI:5489057|PMID:19014335) RGD PMID:19014335 MGI:MGI:5489057 NCBI chr15:93,612,968...93,622,322
Ensembl chr15:93,612,971...93,622,358
JBrowse link
G Actr3 actin related protein 3 IDA RGD PMID:22319661 RGD:11530045 NCBI chr13:41,695,520...41,738,622
Ensembl chr13:41,695,183...41,738,658
JBrowse link
G Adamts12 ADAM metallopeptidase with thrombospondin type 1 motif, 12 ISO (PMID:18485748) RGD PMID:18485748 NCBI chr 2:61,039,072...61,340,687
Ensembl chr 2:61,039,053...61,340,697
JBrowse link
G Adamts13 ADAM metallopeptidase with thrombospondin type 1 motif, 13 IEP RGD PMID:18433458 RGD:2315954 NCBI chr 3:5,519,921...5,558,390
Ensembl chr 3:5,519,990...5,558,166
JBrowse link
G Adamts7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 ISO (PMID:18485748) RGD PMID:18485748 NCBI chr 8:97,535,777...97,575,661
Ensembl chr 8:97,535,777...97,575,655
JBrowse link
G Akap12 A-kinase anchoring protein 12 IEP RGD PMID:20454828 RGD:14348957 NCBI chr 1:40,816,130...40,906,582
Ensembl chr 1:40,816,107...40,906,581
JBrowse link
G Akt1 AKT serine/threonine kinase 1 ISO (MGI:MGI:5574155|PMID:24349514)
(PMID:10983986)
RGD PMID:10983986, PMID:24349514 MGI:MGI:5574155 NCBI chr 6:137,218,398...137,239,970
Ensembl chr 6:137,218,376...137,236,258
JBrowse link
G Ankrd1 ankyrin repeat domain 1 ISO (PMID:7730328) RGD PMID:7730328 NCBI chr 1:254,726,985...254,745,673
Ensembl chr 1:254,726,969...254,735,548
JBrowse link
G Apob apolipoprotein B IEP RGD PMID:17405916 RGD:2325768 NCBI chr 6:33,176,826...33,216,381
Ensembl chr 6:33,176,778...33,224,997
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 ISO (PMID:22711822) RGD PMID:22711822 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6275115|PMID:10974027)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:10974027 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6275115 NCBI chr16:53,998,604...54,030,006
Ensembl chr16:53,998,560...54,040,836
JBrowse link
G Asl argininosuccinate lyase IEP with interferon-gamma RGD PMID:11072090 RGD:4139899 NCBI chr12:30,160,922...30,178,348
Ensembl chr12:30,165,694...30,178,341
JBrowse link
G Ass1 argininosuccinate synthase 1 IEP TNFalpha
with interferon-gamma
RGD PMID:12589771, PMID:11072090 RGD:1599307, RGD:4139899 NCBI chr 3:10,327,411...10,375,847
Ensembl chr 3:10,327,414...10,375,826
JBrowse link
G Bag4 BAG cochaperone 4 ISO (PMID:21712384) RGD PMID:21712384 NCBI chr16:71,057,709...71,075,874
Ensembl chr16:71,058,022...71,075,320
JBrowse link
G Bcl2l1 Bcl2-like 1 IEP RGD PMID:21937453 RGD:11353803 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Bdnf brain-derived neurotrophic factor IEP RGD PMID:21958434 RGD:8657122 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
G Birc2 baculoviral IAP repeat-containing 2 ISO MGI:MGI:1197007 (MGI:MGI:3819901|PMID:18621737) RGD PMID:18621737 MGI:MGI:3819901 NCBI chr 8:6,014,014...6,036,668
Ensembl chr 8:6,013,207...6,034,142
JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 ISO MGI:MGI:1197009 (MGI:MGI:3819901|PMID:18621737) RGD PMID:18621737 MGI:MGI:3819901 NCBI chr 8:6,048,590...6,076,828
Ensembl chr 8:6,048,969...6,076,598
JBrowse link
G Brca1 BRCA1, DNA repair associated ISO
IEA
(PMID:23415688)
GO_REF:0000107
RGD
Ensembl
PMID:23415688 GO_REF:0000107 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Cactin cactin, spliceosome C complex subunit ISO (PMID:20829348) RGD PMID:20829348 NCBI chr 7:11,258,526...11,266,509
Ensembl chr 7:11,261,201...11,266,630
JBrowse link
G Calca calcitonin-related polypeptide alpha IEP RGD PMID:21958434 RGD:8657122 NCBI chr 1:184,184,018...184,188,922
Ensembl chr 1:184,184,020...184,188,911
JBrowse link
G Camp cathelicidin antimicrobial peptide IEP TNFalpha RGD PMID:19879657 RGD:2316237 NCBI chr 8:117,930,557...117,932,371
Ensembl chr 8:117,930,546...117,932,518
JBrowse link
G Ccl1 C-C motif chemokine ligand 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,534,976...69,537,836
Ensembl chr10:69,534,933...69,537,882
JBrowse link
G Ccl11 C-C motif chemokine ligand 11 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,434,965...69,439,566
Ensembl chr10:69,434,941...69,439,575
JBrowse link
G Ccl12 chemokine (C-C motif) ligand 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,476,866...69,478,416
Ensembl chr10:69,476,775...69,478,462
JBrowse link
G Ccl17 C-C motif chemokine ligand 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,619,220...10,620,671
Ensembl chr19:10,619,220...10,620,671
JBrowse link
G Ccl19 C-C motif chemokine ligand 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:58,181,025...58,182,969
Ensembl chr 5:58,181,026...58,183,017
JBrowse link
G Ccl2 C-C motif chemokine ligand 2 IEP
IBA
ISO
PMID:21873635
(PMID:9407497)
(MGI:MGI:3699670|PMID:14662900)
RGD PMID:9407497, PMID:14662900, PMID:14512159, PMID:21873635 MGI:MGI:3699670, RGD:8548859, RGD:13792537 NCBI chr10:69,412,065...69,413,863
Ensembl chr10:69,412,017...69,413,870
JBrowse link
G Ccl20 C-C motif chemokine ligand 20 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:88,918,359...88,921,017
Ensembl chr 9:88,918,433...88,921,001
JBrowse link
G Ccl21 C-C motif chemokine ligand 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:58,197,678...58,198,782
Ensembl chr 5:58,197,680...58,198,782
JBrowse link
G Ccl22 C-C motif chemokine ligand 22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,674,189...10,681,145
Ensembl chr19:10,674,189...10,681,145
JBrowse link
G Ccl24 C-C motif chemokine ligand 24 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,131,529...24,152,626
Ensembl chr12:24,148,567...24,152,625
JBrowse link
G Ccl25 C-C motif chemokine ligand 25 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:2,429,492...2,438,928
Ensembl chr12:2,429,509...2,438,817
JBrowse link
G Ccl26 C-C motif chemokine ligand 26 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,157,182...24,161,870
Ensembl chr12:24,158,766...24,161,869
JBrowse link
G Ccl3 C-C motif chemokine ligand 3 ISO
IBA
(PMID:9407497)
PMID:21873635
RGD PMID:9407497, PMID:21873635 RGD:13792537 NCBI chr10:70,869,516...70,871,066
Ensembl chr10:70,869,513...70,871,066
JBrowse link
G Ccl4 C-C motif chemokine ligand 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,870,926...70,886,357
Ensembl chr10:70,884,531...70,886,355
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 IEP
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:9407497)
Ensembl
RGD
PMID:9407497, PMID:20663893, PMID:21873635 GO_REF:0000107, RGD:4889885, RGD:13792537 NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
JBrowse link
G Ccl6 chemokine (C-C motif) ligand 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,798,118...70,802,750
Ensembl chr10:70,797,124...70,802,782
JBrowse link
G Ccl7 C-C motif chemokine ligand 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:69,423,083...69,424,933
Ensembl chr10:69,423,086...69,424,979
JBrowse link
G Ccl9 chemokine (C-C motif) ligand 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:70,783,426...70,788,372
Ensembl chr10:70,783,424...70,788,309
JBrowse link
G Cd40 CD40 molecule IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:10403401, PMID:21873635 RGD:634252, RGD:13792537 NCBI chr 3:161,519,789...161,534,943
Ensembl chr 3:161,519,743...161,534,704
JBrowse link
G Cd40lg CD40 ligand IEP RGD PMID:26095681 RGD:11344966 NCBI chr  X:159,703,703...159,714,886
Ensembl chr  X:159,703,578...159,716,562
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha ISO
IEA
(MGI:MGI:49915|PMID:1618860)
GO_REF:0000107
RGD
Ensembl
PMID:1618860 GO_REF:0000107, MGI:MGI:49915 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Cfl1 cofilin 1 IDA RGD PMID:24760020 RGD:11570414 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
G Chi3l1 chitinase 3 like 1 IEP TNF-alpha RGD PMID:16234240 RGD:4892601 NCBI chr13:51,022,844...51,030,797
Ensembl chr13:51,022,681...51,030,802
JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex ISO (PMID:23091055) RGD PMID:23091055 NCBI chr 1:263,848,829...263,884,354
Ensembl chr 1:263,848,884...263,885,169
JBrowse link
G Cib1 calcium and integrin binding 1 ISO
ISS
(PMID:19854831)
GO_REF:0000024
RGD
UniProt
PMID:19854831 GO_REF:0000024 NCBI chr 1:142,014,962...142,020,461
Ensembl chr 1:142,014,958...142,020,525
JBrowse link
G Cldn1 claudin 1 IEP RGD PMID:21748286 RGD:11341809 NCBI chr11:77,815,216...77,830,373
Ensembl chr11:77,815,181...77,830,416
JBrowse link
G Col1a1 collagen type I alpha 1 chain IEP RGD PMID:17485223 RGD:8552773 NCBI chr10:82,745,801...82,762,790
Ensembl chr10:82,745,801...82,762,789
JBrowse link
G Col2a1 collagen type II alpha 1 chain IEP RGD PMID:19144181 RGD:8661243 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997
JBrowse link
G Crhbp corticotropin releasing hormone binding protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:15345745)
Ensembl
UniProt
RGD
PMID:15345745 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:25,141,471...25,153,334
Ensembl chr 2:25,141,471...25,153,334
JBrowse link
G Cx3cl1 C-X3-C motif chemokine ligand 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:10,644,267...10,654,861
Ensembl chr19:10,644,244...10,653,800
JBrowse link
G Cyba cytochrome b-245 alpha chain IEP RGD PMID:9445395 RGD:2317868 NCBI chr19:55,249,634...55,257,824
Ensembl chr19:55,249,616...55,257,876
JBrowse link
G Cyp11a1 cytochrome P450, family 11, subfamily a, polypeptide 1 IEP RGD PMID:9397943 RGD:4891988 NCBI chr 8:62,798,317...62,809,848
Ensembl chr 8:62,779,875...62,809,893
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 IEP TNF-alpha RGD PMID:10403529 RGD:7815048 NCBI chr 6:2,308,179...2,316,739
Ensembl chr 6:2,307,808...2,316,722
JBrowse link
G Dab2ip DAB2 interacting protein IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:3796479|PMID:18281285), (MGI:MGI:4398763|PMID:19903888)
(PMID:12813029), (PMID:15310755), (PMID:17389591)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:12813029, PMID:15310755, PMID:17389591, PMID:18281285, PMID:19903888 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3796479, MGI:MGI:4398763 NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
JBrowse link
G Daxx death-domain associated protein IEP RGD PMID:21572393 RGD:9587767 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Dbn1 drebrin 1 IDA RGD PMID:22319661 RGD:11530045 NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
JBrowse link
G Dcstamp dendrocyte expressed seven transmembrane protein ISO (MGI:MGI:3588832|PMID:16061724) RGD PMID:16061724 MGI:MGI:3588832 NCBI chr 7:78,642,016...78,651,763
Ensembl chr 7:78,649,875...78,650,906
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:15355351) RGD PMID:15355351 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Edn1 endothelin 1 IEP RGD PMID:20512083 RGD:4144864 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IEP RGD PMID:23990338 RGD:9685490 NCBI chr 1:259,692,020...259,818,922
Ensembl chr 1:259,739,955...259,819,494
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 IEP RGD PMID:23990338 RGD:9685490 NCBI chr 3:2,617,795...2,623,818
Ensembl chr 3:2,617,805...2,623,445
JBrowse link
G Erbin erbb2 interacting protein ISO (PMID:16203728) RGD PMID:16203728 NCBI chr 2:33,880,860...33,952,806
Ensembl chr 2:33,881,024...33,920,837
JBrowse link
G Fabp4 fatty acid binding protein 4 ISO
IEA
(MGI:MGI:49915|PMID:1618860)
GO_REF:0000107
RGD
Ensembl
PMID:1618860 GO_REF:0000107, MGI:MGI:49915 NCBI chr 2:93,792,666...93,797,267
Ensembl chr 2:93,792,601...93,797,305
JBrowse link
G Fas Fas cell surface death receptor IEP RGD PMID:10678925 RGD:8662912 NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
JBrowse link
G Fcar Fc fragment of IgA receptor ISO (PMID:25339672) RGD PMID:25339672 NCBI chr 1:73,230,392...73,263,462
Ensembl chr 1:73,230,390...73,264,302
JBrowse link
G Foxp1 forkhead box P1 IEP RGD PMID:26842647 RGD:11561903 NCBI chr 4:131,362,178...131,963,466
Ensembl chr 4:131,366,744...131,694,755
JBrowse link
G Gata3 GATA binding protein 3 ISO (PMID:19674970) RGD PMID:19674970 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gba glucosylceramidase beta ISO (PMID:19279008) RGD PMID:19279008 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G Gbp1 guanylate binding protein 1 ISO (PMID:17266443) RGD PMID:17266443 NCBI chr 2:248,343,334...248,423,402
Ensembl chr 2:248,398,917...248,409,570
JBrowse link
G Gbp2 guanylate binding protein 2 IEA
ISO
GO_REF:0000107
(PMID:17266443)
Ensembl
RGD
PMID:17266443 GO_REF:0000107 NCBI chr 2:248,276,795...248,293,784
Ensembl chr 2:248,276,709...248,293,784
JBrowse link
G Gbp3 guanylate binding protein 3 ISO (PMID:17266443) RGD PMID:17266443 NCBI chr 2:248,450,908...248,491,258
Ensembl chr 2:248,451,547...248,484,100
JBrowse link
G Gfer growth factor, augmenter of liver regeneration IEP RGD PMID:23073658 RGD:9685733 NCBI chr10:14,059,347...14,061,703
Ensembl chr10:14,059,347...14,061,703
JBrowse link
G Gpd1 glycerol-3-phosphate dehydrogenase 1 ISO (MGI:MGI:82518|PMID:3027100) RGD PMID:3027100 MGI:MGI:82518 NCBI chr 7:141,368,928...141,377,931
Ensembl chr 7:141,370,491...141,377,928
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23285008)
Ensembl
UniProt
RGD
PMID:23285008 GO_REF:0000024, GO_REF:0000107 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Gsdme gasdermin E ISO (PMID:28459430) RGD PMID:28459430 NCBI chr 4:79,934,075...79,999,678
Ensembl chr 4:79,934,887...79,989,572
JBrowse link
G Hamp hepcidin antimicrobial peptide IEP RGD PMID:23506423 RGD:11041627 NCBI chr 1:89,368,021...89,369,960
Ensembl chr 1:89,368,021...89,369,960
JBrowse link
G Has2 hyaluronan synthase 2 ISO (PMID:20522558) RGD PMID:20522558 NCBI chr 7:96,438,046...96,464,049
Ensembl chr 7:96,438,046...96,464,049
JBrowse link
G Hdac1 histone deacetylase 1 IEP RGD PMID:20037577 RGD:9590131 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac4 histone deacetylase 4 IEP RGD PMID:22389387 RGD:9681445 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEP RGD PMID:23589286 RGD:9685382 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hyal1 hyaluronidase 1 IEA
ISO
GO_REF:0000107
(PMID:18390475)
Ensembl
RGD
PMID:18390475 GO_REF:0000107 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435
JBrowse link
G Hyal2 hyaluronidase 2 IEA
ISO
GO_REF:0000107
(PMID:18390475)
Ensembl
RGD
PMID:18390475 GO_REF:0000107 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Hyal3 hyaluronidase 3 IEA
ISO
GO_REF:0000107
(PMID:18390475)
Ensembl
RGD
PMID:18390475 GO_REF:0000107 NCBI chr 8:116,336,512...116,342,147
Ensembl chr 8:116,336,512...116,342,146
JBrowse link
G Icam1 intercellular adhesion molecule 1 IEP RGD PMID:15087287 RGD:1358663 NCBI chr 8:22,035,287...22,047,049
Ensembl chr 8:22,035,256...22,047,059
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ISO
ISS
(PMID:23091055)
GO_REF:0000024
RGD
UniProt
PMID:23091055 GO_REF:0000024 NCBI chr16:74,177,233...74,230,809
Ensembl chr16:74,177,215...74,230,815
JBrowse link
G Il18 interleukin 18 IEP RGD PMID:18547159 RGD:4889457 NCBI chr 8:55,009,666...55,016,286
Ensembl chr 8:54,993,859...55,016,299
JBrowse link
G Il18bp interleukin 18 binding protein IEP RGD PMID:12684057 RGD:4889505 NCBI chr 1:167,091,521...167,095,727
Ensembl chr 1:167,091,522...167,093,560
JBrowse link
G Il6 interleukin 6 IEP
ISO
(MGI:MGI:4415769|PMID:19955433) RGD PMID:19955433, PMID:2121800 MGI:MGI:4415769, RGD:7829782 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K ISO (PMID:21712384) RGD PMID:21712384 NCBI chr10:63,775,639...63,796,879
Ensembl chr10:63,776,378...63,795,899
JBrowse link
G Irf1 interferon regulatory factor 1 IDA RGD PMID:16978650 RGD:5128784 NCBI chr10:39,109,530...39,116,532
Ensembl chr10:39,109,522...39,116,531
JBrowse link
G Kat2a lysine acetyltransferase 2A IEP RGD PMID:20130956 RGD:9590236 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 IEP RGD PMID:19460779 RGD:7296986 NCBI chr 1:102,103,093...102,107,134
Ensembl chr 1:102,103,094...102,106,127
JBrowse link
G Klf2 Kruppel-like factor 2 IEP RGD PMID:18406357 RGD:2316543 NCBI chr16:19,223,087...19,225,037
Ensembl chr16:19,223,087...19,225,037
JBrowse link
G Lcn2 lipocalin 2 IEP TNFalpha RGD PMID:19329498 RGD:2316495 NCBI chr 3:11,414,189...11,417,534
Ensembl chr 3:11,414,186...11,417,546
JBrowse link
G Map3k5 mitogen-activated protein kinase kinase kinase 5 IEP RGD PMID:20716917 RGD:10412640 NCBI chr 1:15,412,603...15,613,752
Ensembl chr 1:15,412,603...15,613,746
JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO MGI:MGI:1346859 (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk14 mitogen activated protein kinase 14 ISO
IEA
(MGI:MGI:5574155|PMID:24349514)
GO_REF:0000107
RGD
Ensembl
PMID:24349514 GO_REF:0000107, MGI:MGI:5574155 NCBI chr20:5,933,290...5,995,137
Ensembl chr20:5,933,303...5,995,137
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO MGI:MGI:1346858 (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Mapk9 mitogen-activated protein kinase 9 IEP TNFalpha RGD PMID:9475517 RGD:2304245 NCBI chr10:35,333,859...35,374,364
Ensembl chr10:35,333,859...35,374,355
JBrowse link
G Mir101-2 microRNA 101-2 ISO (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr 1:247,263,723...247,263,819
Ensembl chr 1:247,263,723...247,263,819
JBrowse link
G Mir103a1 microRNA 103a-1 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr10:20,606,715...20,606,800
Ensembl chr10:20,606,715...20,606,800
JBrowse link
G Mir103a2 microRNA 103a-2 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr 3:123,833,671...123,833,756
Ensembl chr 3:123,833,671...123,833,756
JBrowse link
G Mir125b1 microRNA 125b-1 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr 8:45,798,260...45,798,346
Ensembl chr 8:45,798,260...45,798,346
JBrowse link
G Mir125b2 microRNA 125b-2 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr11:16,097,346...16,097,433 JBrowse link
G Mir143 microRNA 143 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Mir146b microRNA 146b ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr 1:266,089,488...266,089,575
Ensembl chr 1:266,089,488...266,089,575
JBrowse link
G Mir148a microRNA 148a ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr 4:81,013,269...81,013,365
Ensembl chr 4:81,013,269...81,013,365
JBrowse link
G Mir221 microRNA 221 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr  X:3,684,480...3,684,588
Ensembl chr  X:3,684,480...3,684,588
JBrowse link
G Mir222 microRNA 222 ISO (MGI:MGI:4352813|PMID:19188425) RGD PMID:19188425 MGI:MGI:4352813 NCBI chr  X:3,683,919...3,684,021
Ensembl chr  X:3,683,919...3,684,021
JBrowse link
G Mir27a microRNA 27a IEP RGD PMID:29373037 RGD:26923905 NCBI chr19:25,318,736...25,318,822
Ensembl chr19:25,318,736...25,318,822
JBrowse link
G Mir28 microRNA 28 IEP RGD PMID:29373037 RGD:26923905 NCBI chr11:79,380,523...79,380,608
Ensembl chr11:79,380,523...79,380,608
JBrowse link
G Mir331 microRNA 331 ISO (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr 7:34,881,095...34,881,190
Ensembl chr 7:34,881,095...34,881,190
JBrowse link
G Mir34a microRNA 34a IEP RGD PMID:29373037 RGD:26923905 NCBI chr 5:167,092,491...167,092,592
Ensembl chr 5:167,092,491...167,092,592
JBrowse link
G Mir494 microRNA 494 ISO (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr 6:133,864,370...133,864,452
Ensembl chr 6:133,864,369...133,864,453
JBrowse link
G Mmp1 matrix metallopeptidase 1 IEP RGD PMID:22410640 RGD:7207278 NCBI chr 8:5,703,206...5,723,593
Ensembl chr 8:5,703,206...5,723,591
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEP RGD PMID:22410640 RGD:7207278 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Muc19 mucin 19, oligomeric ISO RGD RGD:11554183 NCBI chr 7:133,048,727...133,166,551 JBrowse link
G Muc2 mucin 2, oligomeric mucus/gel-forming IEP
ISO
RGD PMID:18507686 RGD:11554332, RGD:2324885 NCBI chr 1:214,663,929...214,693,197 JBrowse link
G Myod1 myogenic differentiation 1 ISO
IEA
(MGI:MGI:5574155|PMID:24349514)
GO_REF:0000107
RGD
Ensembl
PMID:24349514 GO_REF:0000107, MGI:MGI:5574155 NCBI chr 1:102,396,538...102,399,248
Ensembl chr 1:102,396,538...102,399,248
JBrowse link
G Myog myogenin ISO (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr13:51,126,459...51,129,048
Ensembl chr13:51,126,459...51,129,048
JBrowse link
G Nfe2l2 nuclear factor, erythroid 2-like 2 ISO
IEP
(PMID:18202225) RGD PMID:18202225, PMID:29373037 RGD:26923905 NCBI chr 3:62,497,568...62,525,146
Ensembl chr 3:62,497,571...62,524,996
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 IEP
IEA
ISO
IDA
GO_REF:0000107
(MGI:MGI:5574155|PMID:24349514)
Ensembl
RGD
PMID:24349514, PMID:9718198, PMID:18625500 GO_REF:0000107, MGI:MGI:5574155, RGD:10045657, RGD:10045871 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO (MGI:MGI:5574155|PMID:24349514) RGD PMID:24349514 MGI:MGI:5574155 NCBI chr 6:76,267,227...76,270,457
Ensembl chr 6:76,267,228...76,270,457
JBrowse link
G Nkx3-1 NK3 homeobox 1 ISO (PMID:18757402) RGD PMID:18757402 NCBI chr15:51,065,316...51,067,908
Ensembl chr15:51,065,316...51,068,421
JBrowse link
G Nos2 nitric oxide synthase 2 IEP with IL1beta RGD PMID:21965676 RGD:5508742 NCBI chr10:66,188,290...66,221,621
Ensembl chr10:66,189,786...66,313,190
JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:22566503 RGD:7794760 NCBI chr 4:7,321,908...7,342,404
Ensembl chr 4:7,320,668...7,342,410
JBrowse link
G Npnt nephronectin ISO (MGI:MGI:5285024|PMID:21689636) RGD PMID:21689636 MGI:MGI:5285024 NCBI chr 2:238,001,767...238,068,886
Ensembl chr 2:238,002,990...238,068,694
JBrowse link
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6162161|PMID:29533925)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29533925 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6162161 NCBI chr10:86,683,875...86,690,815
Ensembl chr10:86,683,875...86,690,815
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IEP RGD PMID:21958434 RGD:8657122 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Ocln occludin IEP RGD PMID:21748286 RGD:11341809 NCBI chr 2:30,527,327...30,577,218
Ensembl chr 2:30,527,715...30,577,218
JBrowse link
G Ocstamp osteoclast stimulatory transmembrane protein ISO (MGI:MGI:5319606|PMID:18064667), (MGI:MGI:5426132|PMID:20882308) RGD PMID:18064667, PMID:20882308 MGI:MGI:5319606, MGI:MGI:5426132 NCBI chr 3:162,073,573...162,080,487
Ensembl chr 3:162,075,340...162,080,192
JBrowse link
G Optn optineurin IEP RGD PMID:28776281 RGD:13432574 NCBI chr17:77,167,700...77,218,374
Ensembl chr17:77,167,740...77,218,389
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEP RGD PMID:18335579 RGD:10445832 NCBI chr 3:171,213,936...171,219,885
Ensembl chr 3:171,213,936...171,219,871
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IEP RGD PMID:19268478 RGD:10427879 NCBI chr15:34,216,735...34,224,357
Ensembl chr15:34,216,833...34,224,193
JBrowse link
G Pid1 phosphotyrosine interaction domain containing 1 ISO (MGI:MGI:5308004|PMID:19894142) RGD PMID:19894142 MGI:MGI:5308004 NCBI chr 9:91,667,748...91,683,468
Ensembl chr 9:91,665,986...91,882,927
JBrowse link
G Postn periostin IEP RGD PMID:20458732 RGD:10041020 NCBI chr 2:143,656,820...143,688,087
Ensembl chr 2:143,656,793...143,688,087
JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IEP RGD PMID:22343369 RGD:7242186 NCBI chr14:63,095,291...63,190,688
Ensembl chr14:63,095,720...63,187,009
JBrowse link
G Prpf8 pre-mRNA processing factor 8 IDA RGD PMID:1345341 RGD:10045884 NCBI chr10:63,635,239...63,658,360
Ensembl chr10:63,635,219...63,658,361
JBrowse link
G Pycard PYD and CARD domain containing ISO (PMID:12486103) RGD PMID:12486103 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Reg3b regenerating family member 3 beta IEP RGD PMID:10982776 RGD:9831402 NCBI chr 4:109,467,272...109,470,510
Ensembl chr 4:109,467,272...109,470,510
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO (PMID:18045535), (PMID:18073330), (PMID:23091055), (PMID:23878390) RGD PMID:18045535, PMID:18073330, PMID:23091055, PMID:23878390 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (PMID:17389591) RGD PMID:17389591 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Rora RAR-related orphan receptor A ISO (MGI:MGI:4415769|PMID:19955433) RGD PMID:19955433 MGI:MGI:4415769 NCBI chr 8:75,515,886...75,616,477
Ensembl chr 8:75,516,904...75,607,212
JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:18045535) RGD PMID:18045535 NCBI chr 1:164,435,868...164,441,167
Ensembl chr 1:164,435,878...164,441,167
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 IEA
ISO
GO_REF:0000107
(PMID:9391078)
Ensembl
RGD
PMID:9391078 GO_REF:0000107 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
G Sgms1 sphingomyelin synthase 1 IEP RGD PMID:12353928 RGD:1302423 NCBI chr 1:250,692,448...250,951,685
Ensembl chr 1:250,691,370...250,951,697
JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:15152190)
GO_REF:0000107
RGD
Ensembl
PMID:15152190 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Slc11a2 solute carrier family 11 member 2 IEP RGD PMID:16221503 RGD:5688725 NCBI chr 7:142,025,812...142,062,892
Ensembl chr 7:142,025,815...142,063,212
JBrowse link
G Slc2a4 solute carrier family 2 member 4 ISO (MGI:MGI:49915|PMID:1618860) RGD PMID:1618860 MGI:MGI:49915 NCBI chr10:56,552,921...56,558,562
Ensembl chr10:56,552,983...56,558,487
JBrowse link
G Slk STE20-like kinase IEP RGD PMID:21572393 RGD:9587767 NCBI chr 1:267,359,761...267,415,735
Ensembl chr 1:267,359,830...267,412,810
JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 ISO
IEA
MGI:MGI:1856877 (MGI:MGI:3587156|PMID:16025116), (MGI:MGI:4440357|PMID:20352118)
GO_REF:0000107
RGD
Ensembl
PMID:16025116, PMID:20352118 GO_REF:0000107, MGI:MGI:3587156, MGI:MGI:4440357 NCBI chr19:38,237,963...38,321,572
Ensembl chr19:38,237,965...38,321,528
JBrowse link
G Smpd4 sphingomyelin phosphodiesterase 4 ISO (PMID:16517606)
(MGI:MGI:6450503|PMID:25180167)
RGD PMID:16517606, PMID:25180167 MGI:MGI:6450503 NCBI chr11:87,522,971...87,546,687
Ensembl chr11:87,522,971...87,546,687
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 IEP RGD PMID:10022522 RGD:10448942 NCBI chr 1:101,367,470...101,388,153
Ensembl chr 1:101,367,471...101,388,129
JBrowse link
G Tank TRAF family member-associated NFKB activator ISO (PMID:25861989) RGD PMID:25861989 NCBI chr 3:47,439,007...47,515,706
Ensembl chr 3:47,439,076...47,515,700
JBrowse link
G Tcl1a Tcl1 family Akt coactivator A ISO (PMID:10983986) RGD PMID:10983986 NCBI chr 6:128,888,768...128,894,761
Ensembl chr 6:128,888,768...128,894,761
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO (PMID:17720976) RGD PMID:17720976 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Thbs1 thrombospondin 1 IEP RGD PMID:15831915 RGD:2317962 NCBI chr 3:109,862,120...109,873,466
Ensembl chr 3:109,862,117...109,873,466
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B IEP RGD PMID:11324713 RGD:13825430 NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
JBrowse link
G Tnfrsf21 TNF receptor superfamily member 21 ISO (PMID:19654028) RGD PMID:19654028 NCBI chr 9:20,546,159...20,621,051
Ensembl chr 9:20,546,159...20,621,051
JBrowse link
G Tradd TNFRSF1A-associated via death domain ISO (PMID:25732226) RGD PMID:25732226 NCBI chr19:37,214,461...37,221,099
Ensembl chr19:37,214,471...37,216,572
JBrowse link
G Trpv1 transient receptor potential cation channel, subfamily V, member 1 IEP RGD PMID:21958434 RGD:8657122 NCBI chr10:59,799,123...59,824,208
Ensembl chr10:59,799,123...59,824,679
JBrowse link
G Vcam1 vascular cell adhesion molecule 1 IEP RGD PMID:23035855 RGD:7207794 NCBI chr 2:219,071,193...219,090,931
Ensembl chr 2:219,071,193...219,097,619
JBrowse link
G Wdr35 WD repeat domain 35 IMP RGD PMID:20193664 RGD:11553917 NCBI chr 6:34,094,291...34,152,048
Ensembl chr 6:34,094,306...34,151,622
JBrowse link
G Xcl1 X-C motif chemokine ligand 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:83,199,402...83,202,845
Ensembl chr13:83,199,264...83,202,864
JBrowse link
G Xdh xanthine dehydrogenase IEP RGD PMID:12653206 RGD:1624380 NCBI chr 6:25,149,570...25,211,273
Ensembl chr 6:25,149,235...25,211,494
JBrowse link
G Ybx3 Y box binding protein 3 ISO
IEA
(PMID:22711822)
GO_REF:0000107
RGD
Ensembl
PMID:22711822 GO_REF:0000107 NCBI chr 4:165,606,819...165,630,041
Ensembl chr 4:165,606,819...165,630,118
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
ISS
(PMID:19909337)
GO_REF:0000024
RGD
UniProt
PMID:19909337 GO_REF:0000024 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zfand6 zinc finger AN1-type containing 6 ISO
ISS
(PMID:21810480)
GO_REF:0000024
RGD
UniProt
PMID:21810480 GO_REF:0000024 NCBI chr 1:146,745,850...146,823,762
Ensembl chr 1:146,745,859...146,823,762
JBrowse link
G Zfp36 zinc finger protein 36 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5784999|PMID:9703499)
(PMID:20166898)
Ensembl
UniProt
RGD
PMID:9703499, PMID:20166898 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5784999 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 ISO
ISS
(PMID:20166898)
GO_REF:0000024
RGD
UniProt
PMID:20166898 GO_REF:0000024 NCBI chr 6:103,308,032...103,313,074
Ensembl chr 6:103,308,045...103,313,074
JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 ISO (PMID:20166898) RGD PMID:20166898 NCBI chr 6:7,417,416...7,423,447
Ensembl chr 6:7,417,425...7,421,456
JBrowse link
negative regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10604883)
GO_REF:0000024
RGD
UniProt
PMID:10604883 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21571275) RGD PMID:21571275 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Ccdc3 coiled-coil domain containing 3 ISO (PMID:25193116) RGD PMID:25193116 NCBI chr17:76,991,722...77,093,515
Ensembl chr17:76,995,043...77,093,308
JBrowse link
G F2rl1 F2R like trypsin receptor 1 ISO (PMID:19781631) RGD PMID:19781631 NCBI chr 2:25,222,324...25,235,275
Ensembl chr 2:25,222,328...25,235,275
JBrowse link
G Gas6 growth arrest specific 6 ISO
ISS
(PMID:19657094)
GO_REF:0000024
RGD
UniProt
PMID:19657094 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Gps2 G protein pathway suppressor 2 ISO (MGI:MGI:6148454|PMID:22424771) RGD PMID:22424771 MGI:MGI:6148454 NCBI chr10:56,524,327...56,527,447
Ensembl chr10:56,524,468...56,526,987
JBrowse link
G Hist2h2be histone cluster 2 H2B family member E ISO (PMID:11859126) RGD PMID:11859126 NCBI chr 2:198,360,837...198,363,399
Ensembl chr 2:198,360,998...198,361,378
JBrowse link
G Nlrp1b NLR family, pyrin domain containing 1B ISO (PMID:11821383) RGD PMID:11821383 NCBI chr10:57,755,957...57,847,867 JBrowse link
G Nol3 nucleolar protein 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:5617337|PMID:24440909)
Ensembl
RGD
PMID:24440909 GO_REF:0000107, MGI:MGI:5617337 NCBI chr19:37,232,567...37,236,668
Ensembl chr19:37,235,001...37,236,649
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 IEA
ISO
GO_REF:0000107
(MGI:MGI:5707586|PMID:18972444)
Ensembl
RGD
PMID:18972444 GO_REF:0000107, MGI:MGI:5707586 NCBI chr 7:30,003,429...30,162,095
Ensembl chr 7:30,003,429...30,162,056
JBrowse link
G Peli3 pellino E3 ubiquitin protein ligase family member 3 ISO (PMID:24113711)
MGI:MGI:5441750 (MGI:MGI:5546581|PMID:23950925)
RGD PMID:23950925, PMID:24113711 MGI:MGI:5546581 NCBI chr 1:220,191,209...220,204,032
Ensembl chr 1:220,190,067...220,204,032
JBrowse link
G Pias4 protein inhibitor of activated STAT, 4 ISO (MGI:MGI:4453084|PMID:20054338) RGD PMID:20054338 MGI:MGI:4453084 NCBI chr 7:11,414,565...11,428,090
Ensembl chr 7:11,414,446...11,428,552
JBrowse link
G Ptpn2 protein tyrosine phosphatase, non-receptor type 2 ISO
ISS
(MGI:MGI:3530208|PMID:15696169)
GO_REF:0000024
RGD
UniProt
PMID:15696169 GO_REF:0000024, MGI:MGI:3530208 NCBI chr18:63,415,298...63,489,240
Ensembl chr18:63,415,306...63,488,027
JBrowse link
G Rffl ring finger and FYVE-like domain containing E3 ubiquitin protein ligase ISO
ISS
(PMID:18450452)
GO_REF:0000024
RGD
UniProt
PMID:18450452 GO_REF:0000024 NCBI chr10:70,157,621...70,220,618
Ensembl chr10:70,157,621...70,220,582
JBrowse link
G Traip TRAF-interacting protein ISO (PMID:19151749) RGD PMID:19151749 NCBI chr 8:116,730,170...116,750,528
Ensembl chr 8:116,730,641...116,750,709
JBrowse link
positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfrsf11a TNF receptor superfamily member 11A ISO (PMID:18606301) RGD PMID:18606301 NCBI chr13:25,778,306...25,835,802
Ensembl chr13:25,778,317...25,835,957
JBrowse link
G Tnfsf11 TNF superfamily member 11 ISO (PMID:18606301) RGD PMID:18606301 NCBI chr15:60,482,527...60,512,704
Ensembl chr15:60,482,527...60,512,704
JBrowse link
positive regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam17 ADAM metallopeptidase domain 17 ISO
IEA
(PMID:24813629)
GO_REF:0000107
RGD
Ensembl
PMID:24813629 GO_REF:0000107 NCBI chr 6:43,400,525...43,448,280
Ensembl chr 6:43,400,528...43,448,280
JBrowse link
G Casp1 caspase 1 ISO (PMID:16920334) RGD PMID:16920334 NCBI chr 8:2,605,743...2,614,637
Ensembl chr 8:2,604,962...2,614,631
JBrowse link
G Casp4 caspase 4 ISO (PMID:16920334) RGD PMID:16920334 NCBI chr 8:2,616,391...2,651,682
Ensembl chr 8:2,635,851...2,651,652
JBrowse link
G Cpne1 copine 1 ISO
IBA
(PMID:14674885)
PMID:21873635
RGD PMID:14674885, PMID:21873635 RGD:13792537 NCBI chr 3:151,617,733...151,625,448
NCBI chr 3:152,150,143...152,192,936
Ensembl chr 3:151,616,037...151,625,644
Ensembl chr 3:151,616,037...151,625,644
JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A ISO UniProtKB:Q9HC29 (PMID:24790089) RGD PMID:24790089 NCBI chr20:4,875,834...4,881,751
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B ISO UniProtKB:Q9HC29 (PMID:24790089) RGD PMID:24790089 NCBI chr20:4,877,638...4,880,112
Ensembl chr20:2,699,712...2,701,815
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO
ISS
(PMID:23453807)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:23453807 GO_REF:0000024 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Rbm12 RNA binding motif protein 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,616,038...151,658,427
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
Ensembl chr 3:151,641,095...151,658,417
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (MGI:MGI:6271183|PMID:30439713) RGD PMID:30439713 MGI:MGI:6271183 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Traf2 Tnf receptor-associated factor 2 ISO (MGI:MGI:5616328|PMID:11374864) RGD PMID:11374864 MGI:MGI:5616328 NCBI chr 3:2,746,061...2,770,690
Ensembl chr 3:2,746,075...2,770,620
JBrowse link
G Trim32 tripartite motif-containing 32 ISO (MGI:MGI:4453084|PMID:20054338) RGD PMID:20054338 MGI:MGI:4453084 NCBI chr 5:81,431,554...81,449,023
Ensembl chr 5:81,431,600...81,442,451
JBrowse link
G Ube2k ubiquitin-conjugating enzyme E2K ISO (PMID:26707646) RGD PMID:26707646 NCBI chr14:44,289,247...44,348,691
Ensembl chr14:44,289,247...44,348,691
JBrowse link
regulation of tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyld CYLD lysine 63 deubiquitinase IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:5912943|PMID:28701375)
(PMID:26997266), (PMID:27458237), (PMID:27591049)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:26997266, PMID:27458237, PMID:27591049, PMID:28701375 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5912943 NCBI chr19:19,264,984...19,323,817
Ensembl chr19:19,265,164...19,315,357
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 ISO
IEA
(PMID:15701637)
GO_REF:0000107
RGD
Ensembl
PMID:15701637 GO_REF:0000107 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079
JBrowse link
G Otulin OTU deubiquitinase with linear linkage specificity ISO
IBA
(PMID:26997266)
(MGI:MGI:5804663|PMID:27523608), (MGI:MGI:6192867|PMID:29950720)
PMID:21873635
RGD PMID:26997266, PMID:27523608, PMID:29950720, PMID:21873635 MGI:MGI:5804663, MGI:MGI:6192867, RGD:13792537 NCBI chr 2:80,267,724...80,293,204
Ensembl chr 2:80,269,587...80,293,181
JBrowse link
G Pycard PYD and CARD domain containing ISO (PMID:14730312) RGD PMID:14730312 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Sharpin SHANK-associated RH domain interactor ISO
ISS
(PMID:21455173)
(MGI:MGI:4947438|PMID:21455180), (MGI:MGI:4947439|PMID:21455173)
GO_REF:0000024
RGD
UniProt
PMID:21455173, PMID:21455180 GO_REF:0000024, MGI:MGI:4947438, MGI:MGI:4947439 NCBI chr 7:117,413,151...117,417,455
Ensembl chr 7:117,413,152...117,417,363
JBrowse link
G Spata2 spermatogenesis associated 2 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:5912943|PMID:28701375)
(PMID:27307491), (PMID:27458237), (PMID:27545878), (PMID:27591049)
UniProt
RGD
PMID:27307491, PMID:27458237, PMID:27545878, PMID:27591049, PMID:28701375, PMID:21873635 GO_REF:0000024, MGI:MGI:5912943, RGD:13792537 NCBI chr 3:164,229,211...164,239,483
Ensembl chr 3:164,230,852...164,239,250
JBrowse link
G Sphk1 sphingosine kinase 1 ISO
IEA
IMP
ISS
(PMID:20577214)
GO_REF:0000107
PMID:28284343
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20577214, PMID:28284343 GO_REF:0000024, GO_REF:0000107, RGD:14397556 NCBI chr10:105,498,728...105,504,401
Ensembl chr10:105,498,728...105,504,393
JBrowse link
G Syk spleen associated tyrosine kinase ISO
IEA
(PMID:19151749)
GO_REF:0000107
RGD
Ensembl
PMID:19151749 GO_REF:0000107 NCBI chr17:12,614,311...12,669,568
Ensembl chr17:12,614,311...12,669,573
JBrowse link
TNFSF11-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cldn18 claudin 18 ISO MGI:MGI:5007067 (MGI:MGI:5489769|PMID:22437732) RGD PMID:22437732 MGI:MGI:5489769 NCBI chr 8:107,933,725...107,960,656
Ensembl chr 8:107,934,860...107,952,530
JBrowse link
G Pias3 protein inhibitor of activated STAT, 3 ISO (MGI:MGI:3836131|PMID:17442941) RGD PMID:17442941 MGI:MGI:3836131 NCBI chr 2:198,821,377...198,831,533
Ensembl chr 2:198,823,366...198,836,372
JBrowse link
G Tjp2 tight junction protein 2 ISO (MGI:MGI:5489769|PMID:22437732) RGD PMID:22437732 MGI:MGI:5489769 NCBI chr 1:241,945,816...242,084,044
Ensembl chr 1:241,945,841...242,083,484
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A ISO
IBA
(PMID:18606301)
PMID:21873635
RGD PMID:18606301, PMID:21873635 RGD:13792537 NCBI chr13:25,778,306...25,835,802
Ensembl chr13:25,778,317...25,835,957
JBrowse link
G Tnfsf11 TNF superfamily member 11 ISO (PMID:18606301)
(MGI:MGI:3785147|PMID:18269914), (MGI:MGI:3836131|PMID:17442941), (MGI:MGI:5489769|PMID:22437732)
RGD PMID:17442941, PMID:18269914, PMID:18606301, PMID:22437732 MGI:MGI:3785147, MGI:MGI:3836131, MGI:MGI:5489769 NCBI chr15:60,482,527...60,512,704
Ensembl chr15:60,482,527...60,512,704
JBrowse link
tumor necrosis factor-mediated signaling pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 ISO (PMID:25411248) RGD PMID:25411248 NCBI chr 1:87,078,012...87,147,347
Ensembl chr 1:87,078,020...87,147,333
JBrowse link
G Adam17 ADAM metallopeptidase domain 17 ISO (PMID:23389627) RGD PMID:23389627 NCBI chr 6:43,400,525...43,448,280
Ensembl chr 6:43,400,528...43,448,280
JBrowse link
G Aim2 absent in melanoma 2 ISO (PMID:16432157) RGD PMID:16432157 NCBI chr13:91,919,834...91,963,080
Ensembl chr13:91,954,138...91,962,588
JBrowse link
G Arhgef2 Rho/Rac guanine nucleotide exchange factor 2 ISO (PMID:23389627) RGD PMID:23389627 NCBI chr 2:187,964,100...188,022,847
Ensembl chr 2:187,977,008...188,021,377
JBrowse link
G Card14 caspase recruitment domain family, member 14 ISO (PMID:21302310) RGD PMID:21302310 NCBI chr10:108,440,480...108,469,012
Ensembl chr10:108,440,950...108,468,310
JBrowse link
G Cd70 Cd70 molecule IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:9,842,585...9,845,728
Ensembl chr 9:9,842,585...9,845,728
JBrowse link
G Cdip1 cell death-inducing p53 target 1 ISO UniProtKB:P01375 (PMID:17599062) RGD PMID:17599062 NCBI chr10:10,966,819...10,989,937
Ensembl chr10:10,967,658...10,989,936
JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:263,848,829...263,884,354
Ensembl chr 1:263,848,884...263,885,169
JBrowse link
G Commd7 COMM domain containing 7 ISO
IBA
(PMID:15799966)
PMID:21873635
RGD PMID:15799966, PMID:21873635 RGD:13792537 NCBI chr 3:149,101,242...149,115,227
Ensembl chr 3:149,101,243...149,115,209
JBrowse link
G Fas Fas cell surface death receptor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:252,589,785...252,624,790
Ensembl chr 1:252,589,785...252,624,790
JBrowse link
G Foxo3 forkhead box O3 ISO (PMID:15084260) RGD PMID:15084260 NCBI chr20:46,428,078...46,519,156
Ensembl chr20:46,428,124...46,519,144
JBrowse link
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15084260), (PMID:25816133)
(MGI:MGI:5693235|PMID:15084260)
Ensembl
RGD
PMID:15084260, PMID:25816133, PMID:21873635 GO_REF:0000107, MGI:MGI:5693235, RGD:13792537 NCBI chr16:74,177,233...74,230,809
Ensembl chr16:74,177,215...74,230,815
JBrowse link
G Ilk integrin-linked kinase ISO (PMID:21343177) RGD PMID:21343177 NCBI chr 1:170,578,941...170,585,192
Ensembl chr 1:170,578,889...170,585,189
JBrowse link
G Jak2 Janus kinase 2 ISO (PMID:8609418) RGD PMID:8609418 NCBI chr 1:247,398,667...247,457,521
Ensembl chr 1:247,398,598...247,458,509
JBrowse link
G Kars lysyl-tRNA synthetase ISO
IBA
(PMID:15851690)
PMID:21873635
RGD PMID:15851690, PMID:21873635 RGD:13792537 NCBI chr19:44,212,205...44,231,209
Ensembl chr19:44,212,206...44,231,157
JBrowse link
G Krt18 keratin 18 ISO MGI:MGI:96705 (MGI:MGI:3711847|PMID:10747083) RGD PMID:10747083 MGI:MGI:3711847 NCBI chr 7:143,629,455...143,633,131
Ensembl chr 7:143,629,455...143,633,131
JBrowse link
G Krt8 keratin 8 ISO MGI:MGI:2178042|MGI:MGI:96692 (MGI:MGI:3711847|PMID:10747083) RGD PMID:10747083 MGI:MGI:3711847 NCBI chr 7:143,596,511...143,603,745
Ensembl chr 7:143,596,511...143,603,803
JBrowse link
G Lims1 LIM zinc finger domain containing 1 ISO (PMID:21343177) RGD PMID:21343177 NCBI chr20:27,895,981...28,004,767
Ensembl chr20:27,954,433...28,002,082
JBrowse link
G LOC103694380 tumor necrosis factor-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,855,792...4,858,447
Ensembl chr20:4,855,829...4,858,447
JBrowse link
G Nfkbia NFKB inhibitor alpha ISO (PMID:25038658) RGD PMID:25038658 NCBI chr 6:76,267,227...76,270,457
Ensembl chr 6:76,267,228...76,270,457
JBrowse link
G Plvap plasmalemma vesicle associated protein ISO (PMID:19420356) RGD PMID:19420356 NCBI chr16:19,906,354...19,918,668
Ensembl chr16:19,906,318...19,918,689
JBrowse link
G Ptk2b protein tyrosine kinase 2 beta ISO (PMID:8670418) RGD PMID:8670418 NCBI chr15:42,827,306...42,947,796
Ensembl chr15:42,827,310...42,947,656
JBrowse link
G Pycard PYD and CARD domain containing ISO (PMID:12656673) RGD PMID:12656673 NCBI chr 1:199,438,029...199,439,062
Ensembl chr 1:199,437,832...199,439,210
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit ISO (PMID:21343177), (PMID:25411248) RGD PMID:21343177, PMID:25411248 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G St18 ST18 C2H2C-type zinc finger transcription factor IEA
ISO
GO_REF:0000107
(PMID:18676404)
Ensembl
RGD
PMID:18676404 GO_REF:0000107 NCBI chr 5:12,437,617...12,787,223
Ensembl chr 5:12,437,525...12,563,429
JBrowse link
G Stat1 signal transducer and activator of transcription 1 ISO (PMID:10848577) RGD PMID:10848577 NCBI chr 9:54,287,540...54,327,958
Ensembl chr 9:54,287,541...54,484,533
JBrowse link
G Tmsb4x thymosin beta 4, X-linked ISO (PMID:21343177) RGD PMID:21343177 NCBI chr  X:28,593,405...28,617,267
Ensembl chr  X:28,593,405...28,595,395
JBrowse link
G Tnf tumor necrosis factor ISO
IBA
(MGI:MGI:63487|PMID:3898078)
(PMID:10748004), (PMID:31824476)
PMID:21873635
RGD PMID:3898078, PMID:10748004, PMID:31824476, PMID:21873635 MGI:MGI:63487, RGD:13792537 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A ISO (MGI:MGI:4413614|PMID:19940926) RGD PMID:19940926 MGI:MGI:4413614 NCBI chr13:25,778,306...25,835,802
Ensembl chr13:25,778,317...25,835,957
JBrowse link
G Tnfrsf13c TNF receptor superfamily member 13C IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:123,453,799...123,456,289
Ensembl chr 7:123,453,788...123,456,268
JBrowse link
G Tnfrsf17 TNF receptor superfamily member 17 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:4,252,097...4,258,335
Ensembl chr10:4,251,941...4,257,868
JBrowse link
G Tnfrsf18 TNF receptor superfamily member 18 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:173,459,371...173,463,980
Ensembl chr 5:173,460,354...173,463,140
JBrowse link
G Tnfrsf1a TNF receptor superfamily member 1A IMP
ISO
IEA
(PMID:25816133)
GO_REF:0000107
RGD
Ensembl
PMID:25816133, PMID:20967881 GO_REF:0000107, RGD:5130945 NCBI chr 4:157,864,905...157,877,634
Ensembl chr 4:157,864,969...157,877,633
JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:163,136,390...163,167,299
Ensembl chr 5:163,136,390...163,167,299
JBrowse link
G Tnfrsf4 TNF receptor superfamily member 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:173,447,784...173,450,474
Ensembl chr 5:173,447,784...173,450,474
JBrowse link
G Tnfsf11 TNF superfamily member 11 ISO UniProtKB:O35305 (MGI:MGI:4413614|PMID:19940926) RGD PMID:19940926 MGI:MGI:4413614 NCBI chr15:60,482,527...60,512,704
Ensembl chr15:60,482,527...60,512,704
JBrowse link
G Tnfsf18 TNF superfamily member 18 ISO
IBA
(MGI:MGI:5306317|PMID:14521928)
PMID:21873635
RGD PMID:14521928, PMID:21873635 MGI:MGI:5306317, RGD:13792537 NCBI chr13:79,378,412...79,388,687
Ensembl chr13:79,378,733...79,388,498
JBrowse link
G Tp53 tumor protein p53 ISO UniProtKB:P01375 (PMID:22499991) RGD PMID:22499991 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Traf1 TNF receptor-associated factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,003,340...14,022,955
Ensembl chr 3:14,003,340...14,022,672
JBrowse link
G Traf2 Tnf receptor-associated factor 2 IMP
IBA
ISO
PMID:21873635
(PMID:11907583)
RGD PMID:11907583, PMID:10713108, PMID:21873635, PMID:20967881 RGD:2298798, RGD:13792537, RGD:5130945 NCBI chr 3:2,746,061...2,770,690
Ensembl chr 3:2,746,075...2,770,620
JBrowse link
G Traf3 Tnf receptor-associated factor 3 ISO
IBA
(PMID:20185819)
PMID:21873635
(MGI:MGI:3722053|PMID:17015635)
RGD PMID:17015635, PMID:20185819, PMID:21873635 MGI:MGI:3722053, RGD:13792537 NCBI chr 6:135,610,698...135,720,247
Ensembl chr 6:135,610,743...135,718,564
JBrowse link
G Traf4 Tnf receptor associated factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:65,418,688...65,424,802
Ensembl chr10:65,418,700...65,424,802
JBrowse link
G Traf5 TNF receptor-associated factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:110,758,556...110,801,871
Ensembl chr13:110,758,761...110,784,209
JBrowse link
G Traf6 TNF receptor associated factor 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:91,252,829...91,271,607
Ensembl chr 3:91,252,829...91,271,607
JBrowse link
G Txndc17 thioredoxin domain containing 17 ISO (PMID:14607844) RGD PMID:14607844 NCBI chr10:58,776,792...58,779,764
Ensembl chr10:58,776,792...58,779,764
JBrowse link
G Umod uromodulin ISO
IEA
(MGI:MGI:6107740|PMID:28990932)
GO_REF:0000107
RGD
Ensembl
PMID:28990932 GO_REF:0000107, MGI:MGI:6107740 NCBI chr 1:189,186,027...189,199,939
Ensembl chr 1:189,186,026...189,199,376
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    response to stimulus 10583
      response to chemical 6342
        response to organic substance 3865
          response to cytokine 1132
            response to tumor necrosis factor 276
              cellular response to tumor necrosis factor + 248
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.