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ONTOLOGY REPORT - ANNOTATIONS


Term:phosphatidylcholine catabolic process
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Accession:GO:0034638 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
Synonyms:exact_synonym: phosphatidylcholine breakdown;   phosphatidylcholine catabolism;   phosphatidylcholine degradation


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phosphatidylcholine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 IDA
IEA
IBA
ISO
PMID:21240271
GO_REF:0000107
PMID:21873635
(MGI:MGI:5050048|PMID:21240269)
(PMID:21240271)
Ensembl
RGD
PMID:21240269, PMID:21240271, PMID:21240271, PMID:21873635 GO_REF:0000107, MGI:MGI:5050048, RGD:8553522, RGD:13792537 NCBI chr 7:94,479,931...94,563,086
Ensembl chr 7:94,480,396...94,563,001
JBrowse link
G Gdpd3 glycerophosphodiester phosphodiesterase domain containing 3 ISO (MGI:MGI:5616003|PMID:25528375) RGD PMID:25528375 MGI:MGI:5616003 NCBI chr 1:198,199,032...198,209,178
Ensembl chr 1:198,199,622...198,209,150
JBrowse link
G Pla2g10 phospholipase A2, group X ISO
IEA
(PMID:12021277)
GO_REF:0000107
RGD
Ensembl
PMID:12021277 GO_REF:0000107 NCBI chr10:1,509,732...1,520,970
Ensembl chr10:1,509,732...1,520,970
JBrowse link
G Pla2g15 phospholipase A2, group XV ISS
ISO
GO_REF:0000024
(MGI:MGI:3654404|PMID:16880524), (MGI:MGI:3694368|PMID:16837646), (MGI:MGI:6392937|PMID:17626977)
UniProt
RGD
PMID:16837646, PMID:16880524, PMID:17626977 GO_REF:0000024, MGI:MGI:3654404, MGI:MGI:3694368, MGI:MGI:6392937 NCBI chr19:38,129,666...38,146,958
Ensembl chr19:38,129,584...38,146,956
JBrowse link
G Pla2g4a phospholipase A2 group IVA IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:1100763|PMID:9403693)
(PMID:12672805), (PMID:14709560), (PMID:16617059), (PMID:17472963), (PMID:7794891), (PMID:9425121)
Ensembl
UniProt
RGD
PMID:7794891, PMID:9403693, PMID:9425121, PMID:12672805, PMID:14709560, PMID:16617059, PMID:17472963 GO_REF:0000024, GO_REF:0000107, MGI:MGI:1100763 NCBI chr13:67,062,252...67,206,688
Ensembl chr13:66,988,937...67,206,693
JBrowse link
G Pla2g5 phospholipase A2, group V ISO
ISS
(PMID:23533611)
GO_REF:0000024
RGD
UniProt
PMID:23533611 GO_REF:0000024 NCBI chr 5:157,247,601...157,268,968
Ensembl chr 5:157,247,781...157,268,903
JBrowse link
G Pla2g6 phospholipase A2 group VI ISS
ISO
GO_REF:0000024
(PMID:20886109)
UniProt
RGD
PMID:20886109 GO_REF:0000024 NCBI chr 7:120,519,479...120,559,716
Ensembl chr 7:120,519,467...120,559,347
JBrowse link
G Pla2g7 phospholipase A2 group VII ISO (PMID:2040620) RGD PMID:2040620 NCBI chr 9:19,935,754...19,978,013
Ensembl chr 9:19,935,768...19,978,013
JBrowse link
G Plb1 phospholipase B1 IDA PMID:9442065
PMID:9442064
UniProt PMID:9442065, PMID:9442064 RGD:633237, RGD:30309923 NCBI chr 6:25,375,699...25,507,108
Ensembl chr 6:25,397,537...25,507,073
JBrowse link
G Pnliprp2 pancreatic lipase related protein 2 ISO
IEA
ISS
(PMID:17401110)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17401110 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:279,896,973...279,927,600
Ensembl chr 1:279,896,973...279,927,600
JBrowse link
G Pnpla7 patatin-like phospholipase domain containing 7 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:6393153|PMID:28887301)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28887301 GO_REF:0000024, GO_REF:0000107, MGI:MGI:6393153 NCBI chr 3:2,182,191...2,261,890
Ensembl chr 3:2,182,957...2,261,878
JBrowse link
G Pnpla8 patatin-like phospholipase domain containing 8 ISO (PMID:15695510) RGD PMID:15695510 NCBI chr 6:64,224,870...64,288,465
Ensembl chr 6:64,224,861...64,286,785
JBrowse link
negative regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoc1 apolipoprotein C1 ISO (PMID:2302419) RGD PMID:2302419 NCBI chr 1:80,606,638...80,609,921
Ensembl chr 1:80,606,638...80,609,921
JBrowse link
regulation of phosphatidylcholine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ldlr low density lipoprotein receptor ISO
IEA
(MGI:MGI:3784112|PMID:18175806)
GO_REF:0000107
RGD
Ensembl
PMID:18175806 GO_REF:0000107, MGI:MGI:3784112 NCBI chr 8:22,750,425...22,773,305
Ensembl chr 8:22,750,336...22,774,903
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO (MGI:MGI:3784112|PMID:18175806) RGD PMID:18175806 MGI:MGI:3784112 NCBI chr12:36,694,952...36,761,445
Ensembl chr12:36,694,960...36,761,455
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      nitrogen compound metabolic process 10345
        organonitrogen compound metabolic process 7135
          phosphatidylcholine metabolic process 60
            phosphatidylcholine catabolic process 15
              negative regulation of phosphatidylcholine catabolic process 1
              regulation of phosphatidylcholine catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      cellular metabolic process 11067
        phosphorus metabolic process 3291
          phosphate-containing compound metabolic process 3270
            phospholipid metabolic process 415
              glycerophospholipid metabolic process 289
                phosphatidylcholine metabolic process 60
                  phosphatidylcholine catabolic process 15
                    negative regulation of phosphatidylcholine catabolic process 1
                    regulation of phosphatidylcholine catabolic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.