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ONTOLOGY REPORT - ANNOTATIONS


Term:ncRNA metabolic process
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Accession:GO:0034660 term browser browse the term
Definition:The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs).
Synonyms:exact_synonym: ncRNA metabolism


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alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:2302982
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Aarsd1 alanyl-tRNA synthetase domain containing 1 JBrowse link 10 89,317,974 89,331,078 RGD:1600115
aminoacyl-tRNA metabolism involved in translational fidelity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:1600115
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1600115
G Aarsd1 alanyl-tRNA synthetase domain containing 1 JBrowse link 10 89,317,974 89,331,078 RGD:1600115
G Dtd1 D-aminoacyl-tRNA deacylase 1 JBrowse link 3 138,770,573 138,931,544 RGD:1600115
G Dtd2 D-aminoacyl-tRNA deacylase 2 JBrowse link 6 72,781,229 72,786,835 RGD:1624291
G Iars1 isoleucyl-tRNA synthetase 1 JBrowse link 17 15,356,016 15,402,680 RGD:1600115
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:1600115
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1600115
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:1600115
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like JBrowse link 17 14,541,646 14,562,733 RGD:1600115
G Prorsd1 prolyl-tRNA synthetase associated domain containing 1 JBrowse link 14 113,938,061 113,940,330 RGD:1600115
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:1600115
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:1600115
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:1600115
arginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dalrd3 DALR anticodon binding domain containing 3 JBrowse link 8 117,355,943 117,358,819 RGD:1600115
G Rars1 arginyl-tRNA synthetase 1 JBrowse link 10 20,633,630 20,658,074 RGD:2303394
RGD:13792537
RGD:1624291
G Rars2 arginyl-tRNA synthetase 2, mitochondrial JBrowse link 5 50,075,510 50,127,625 RGD:13792537
asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nars1 asparaginyl-tRNA synthetase 1 JBrowse link 18 59,986,350 60,002,644 RGD:1624291
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
aspartyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars aspartyl-tRNA synthetase JBrowse link 13 45,074,067 45,127,815 RGD:13792537
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:13792537
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 2 231,866,888 231,882,002 RGD:1600115
RGD:1624291
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:13792537
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
box H/ACA snoRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:2303815
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535027
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:1600115
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1600115
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mtfmt mitochondrial methionyl-tRNA formyltransferase JBrowse link 8 70,952,209 70,986,393 RGD:13792537
CUT catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease JBrowse link 15 83,466,330 83,494,107 RGD:1624291
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
RGD:13792537
cysteinyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cars cysteinyl-tRNA synthetase JBrowse link 1 216,759,367 216,801,652 RGD:1624291
RGD:13792537
G Cars2 cysteinyl-tRNA synthetase 2, mitochondrial JBrowse link 16 83,288,613 83,325,706 RGD:13792537
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
G Utp23 UTP23, small subunit processome component JBrowse link 7 91,384,329 91,389,605 RGD:1624291
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G AC135409.1 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Kri1 KRI1 homolog JBrowse link 8 22,301,025 22,317,049 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC135409.1 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like JBrowse link 3 112,519,789 112,524,281 RGD:13792537
G Rpusd1 RNA pseudouridine synthase domain containing 1 JBrowse link 10 15,099,104 15,102,968 RGD:13792537
G Rpusd2 RNA pseudouridine synthase domain containing 2 JBrowse link 3 110,835,654 110,840,903 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:1624291
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:13792537
G Eri3 ERI1 exoribonuclease family member 3 JBrowse link 5 136,406,009 136,533,408 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
glutaminyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
G LOC100911132 glutamine--tRNA ligase-like RGD:13792537
G Qars1 glutaminyl-tRNA synthetase 1 JBrowse link 8 117,297,670 117,305,708 RGD:1600115
RGD:13792537
RGD:1624291
glutaminyl-tRNAGln biosynthesis via transamidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gatb glutamyl-tRNA amidotransferase subunit B JBrowse link 2 184,600,695 184,679,980 RGD:1624291
RGD:13792537
G Gatc glutamyl-tRNA amidotransferase subunit C JBrowse link 12 47,031,545 47,039,556 RGD:1624291
RGD:13792537
RGD:1600115
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 JBrowse link 20 48,855,839 48,881,112 RGD:1624291
RGD:13792537
glutamyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1600115
glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:13792537
histidyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hars1 histidyl-tRNA synthetase 1 JBrowse link 18 29,611,545 29,629,087 RGD:1624291
RGD:13792537
G Hars2 histidyl-tRNA synthetase 2, mitochondrial JBrowse link 18 29,629,203 29,638,460 RGD:1624291
RGD:13792537
isoleucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iars1 isoleucyl-tRNA synthetase 1 JBrowse link 17 15,356,016 15,402,680 RGD:1624291
RGD:13792537
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:13792537
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like JBrowse link 17 14,541,646 14,562,733 RGD:13792537
leucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
RGD:13792537
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:1624291
RGD:13792537
lysyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kars lysyl-tRNA synthetase JBrowse link 19 44,212,205 44,231,209 RGD:2303393
RGD:13792537
RGD:1624291
RGD:12911009
RGD:2303394
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07052587.1 RGD:13792537
G AABR07064102.1 RGD:13792537
G AABR07064998.2 RGD:13792537
G AABR07065012.1 RGD:13792537
G AABR07065013.1 RGD:13792537
G C1d C1D nuclear receptor corepressor JBrowse link 14 100,415,645 100,427,878 RGD:1624291
RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mphosph6 M phase phosphoprotein 6 JBrowse link 19 50,357,314 50,367,137 RGD:1624291
RGD:13792537
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
RGD:13792537
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:1624291
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:1600115
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1624291
RGD:13792537
RGD:1600115
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07003273.1 RGD:13792537
G AABR07006536.1 RGD:13792537
G AABR07007121.1 RGD:13792537
G AABR07018167.1 RGD:13792537
G AABR07027819.1 RGD:13792537
G AABR07029262.1 RGD:13792537
G AABR07030630.1 RGD:13792537
G AABR07045321.1 RGD:13792537
G AABR07049918.1 RGD:13792537
G AABR07052519.1 RGD:13792537
G AABR07052587.1 RGD:13792537
G AABR07054456.1 RGD:13792537
G AABR07057586.1 RGD:13792537
G AC094246.2 RGD:13792537
G AC128901.1 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100359687 mitochondrial ribosomal protein L1-like JBrowse link 8 56,411,909 56,502,073 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G LOC103690888 60S ribosomal protein L10a-like JBrowse link X 112,555,128 112,555,864 RGD:13792537
G LOC108348298 ribosomal L1 domain-containing protein 1-like JBrowse link 10 4,487,809 4,499,727 RGD:13792537
G LOC108349606 60S ribosomal protein L7a-like JBrowse link 1 166,282,044 166,282,845 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mrpl1 mitochondrial ribosomal protein L1 JBrowse link 14 14,951,507 15,008,136 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl10a ribosomal protein L10A JBrowse link 20 7,908,309 7,910,867 RGD:13792537
G Rpl7a ribosomal protein L7a JBrowse link 3 5,458,985 5,461,627 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 JBrowse link 10 4,447,239 4,459,125 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07013798.1 RGD:13792537
G AABR07030263.1 RGD:13792537
G AABR07037343.1 RGD:13792537
G AABR07073381.1 RGD:13792537
G AC103056.1 RGD:13792537
G AC121415.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx18 DEAD-box helicase 18 JBrowse link 13 37,522,558 37,536,066 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:1624291
G Nifk nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 13 34,267,442 34,277,543 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:13792537
RGD:1600115
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:13792537
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:13792537
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:13792537
RGD:1600115
G Rpl7l1 ribosomal protein L7-like 1 JBrowse link 9 16,508,477 16,516,502 RGD:13792537
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1600115
RGD:13792537
RGD:1624291
G Znhit3 zinc finger, HIT-type containing 3 JBrowse link 10 72,227,710 72,235,932 RGD:13792537
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:13792537
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:13792537
G Helq helicase, POLQ-like JBrowse link 14 10,446,981 10,491,042 RGD:13792537
G LOC100359503 ribosomal protein S28-like JBrowse link 16 70,644,459 70,644,750 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:13792537
G Nol11 nucleolar protein 11 JBrowse link 10 95,388,223 95,408,053 RGD:1624291
G Nop14 NOP14 nucleolar protein JBrowse link 14 81,340,141 81,361,277 RGD:13792537
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
RGD:13792537
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
RGD:13792537
G Riok3 RIO kinase 3 JBrowse link 18 3,565,166 3,590,739 RGD:1624291
RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:1600115
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
G Srfbp1 serum response factor binding protein 1 JBrowse link 18 47,456,406 47,478,967 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1624291
G Wdr3 WD repeat domain 3 JBrowse link 2 202,447,749 202,470,398 RGD:13792537
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005506.1 RGD:13792537
G AABR07056611.1 RGD:13792537
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:1624291
RGD:1600115
G Dcaf13 DDB1 and CUL4 associated factor 13 JBrowse link 7 78,005,232 78,040,220 RGD:13792537
G Dhx37 DEAH-box helicase 37 JBrowse link 12 36,594,058 36,614,165 RGD:13792537
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G Fam207a family with sequence similarity 207, member A JBrowse link 20 11,863,145 11,896,833 RGD:1600115
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:13792537
G LOC100363452 ribosomal protein S8-like JBrowse link 3 103,192,670 103,193,343 RGD:13792537
G LOC100911847 40S ribosomal protein S14-like JBrowse link 5 144,083,030 144,083,602 RGD:13792537
G LOC108348069 HEAT repeat-containing protein 1 JBrowse link 17 66,578,885 66,619,465 RGD:13792537
G LOC297756 ribosomal protein S8-like JBrowse link 5 2,799,565 2,803,855 RGD:13792537
G Mrps11 mitochondrial ribosomal protein S11 JBrowse link 1 140,477,645 140,487,249 RGD:13792537
G NEWGENE_1562416 TSR2, ribosome maturation factor JBrowse link X 20,224,112 20,232,647 RGD:13792537
G Ngdn neuroguidin JBrowse link 15 33,677,333 33,684,840 RGD:13792537
G Nol10 nucleolar protein 10 JBrowse link 6 42,656,661 42,745,099 RGD:13792537
G Pwp2 PWP2, small subunit processome component JBrowse link 20 11,228,892 11,243,204 RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:13792537
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:13792537
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps8 ribosomal protein S8 JBrowse link 5 136,020,941 136,023,511 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
G Tsr2 TSR2, ribosome maturation factor JBrowse link X 20,141,406 20,146,082 RGD:13792537
G Utp25 UTP25, small subunit processor component JBrowse link 13 111,828,052 111,849,654 RGD:13792537
G Utp3 UTP3, small subunit processome component JBrowse link 14 21,153,998 21,155,652 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:13792537
G Utp6 UTP6 small subunit processome component JBrowse link 10 67,255,177 67,285,754 RGD:13792537
G Wdr46 WD repeat domain 46 JBrowse link 20 5,447,860 5,455,632 RGD:13792537
methionyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100911305 methionine--tRNA ligase, mitochondrial-like JBrowse link 9 61,823,441 61,826,357 RGD:13792537
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:1624291
G Mars2 methionyl-tRNA synthetase 2, mitochondrial JBrowse link 9 64,434,814 64,437,730 RGD:1624291
RGD:13792537
miRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1600115
RGD:1624291
miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1624291
RGD:13792537
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G Lin28b lin-28 homolog B JBrowse link 20 50,482,536 50,580,273 RGD:1624291
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
G Snd1 staphylococcal nuclease and tudor domain containing 1 JBrowse link 4 55,772,377 56,171,669 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Ago4 argonaute RISC component 4 JBrowse link 5 144,501,875 144,557,165 RGD:1624291
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx17 DEAD-box helicase 17 JBrowse link 7 120,761,843 120,765,012 RGD:1624291
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1624291
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
RGD:1624291
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G Trim71 tripartite motif containing 71 JBrowse link 8 122,553,015 122,604,787 RGD:1624291
RGD:1600115
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
G Tut7 terminal uridylyl transferase 7 JBrowse link 17 5,225,854 5,279,674 RGD:1624291
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:13792537
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
RGD:1600115
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:13792537
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link 10 51,478,378 51,501,167 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:1624291
RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:13792537
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:13792537
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
ncRNA deadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
ncRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zcchc8 zinc finger CCHC-type containing 8 JBrowse link 12 38,303,665 38,327,174 RGD:1624291
negative regulation of miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:1600115
RGD:1624291
negative regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:7349314
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1624291
RGD:13792537
RGD:1600115
G Lin28b lin-28 homolog B JBrowse link 20 50,482,536 50,580,273 RGD:1624291
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il6 interleukin 6 JBrowse link 4 3,043,231 3,047,807 RGD:1624291
G Lin28b lin-28 homolog B JBrowse link 20 50,482,536 50,580,273 RGD:1624291
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12789709
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:1624291
nonfunctional rRNA decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:13792537
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
nuclear polyadenylation-dependent tRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
phenylalanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 17 29,006,981 29,438,906 RGD:1600115
RGD:13792537
RGD:1624291
G Farsa phenylalanyl-tRNA synthetase subunit alpha JBrowse link 19 25,969,255 25,978,777 RGD:1624291
RGD:13792537
RGD:1600115
G Farsb phenylalanyl-tRNA synthetase subunit beta JBrowse link 9 84,324,456 84,383,674 RGD:1624291
RGD:13792537
piRNA biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Btbd18 BTB domain containing 18 JBrowse link 3 72,060,811 72,070,566 RGD:1624291
RGD:13792537
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:1624291
RGD:1600115
G Gpat2 glycerol-3-phosphate acyltransferase 2, mitochondrial JBrowse link 3 119,949,921 120,003,090 RGD:1624291
RGD:13792537
G Mybl1 MYB proto-oncogene like 1 JBrowse link 5 9,279,756 9,315,112 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
piRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asz1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 JBrowse link 4 45,358,574 45,414,177 RGD:1624291
RGD:13792537
G Ddx4 DEAD-box helicase 4 JBrowse link 2 44,447,610 44,504,263 RGD:1624291
RGD:1600115
G Exd1 exonuclease 3'-5' domain containing 1 JBrowse link 3 111,326,388 111,354,419 RGD:1624291
G Fkbp6 FKBP prolyl isomerase 6 JBrowse link 12 24,365,941 24,438,088 RGD:1624291
RGD:1600115
G Henmt1 HEN methyltransferase 1 JBrowse link 2 211,740,571 211,753,718 RGD:1624291
RGD:13792537
RGD:1600115
G Mael maelstrom spermatogenic transposon silencer JBrowse link 13 84,412,569 84,452,140 RGD:1624291
RGD:13792537
G Mov10l1 Mov10 like RISC complex RNA helicase 1 JBrowse link 7 129,973,391 130,039,306 RGD:1624291
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
G Piwil2 piwi-like RNA-mediated gene silencing 2 JBrowse link 15 52,037,693 52,116,277 RGD:1624291
G Piwil4 piwi-like RNA-mediated gene silencing 4 JBrowse link 8 13,208,774 13,251,970 RGD:1600115
RGD:1624291
G Pld6 phospholipase D family, member 6 JBrowse link 10 46,142,313 46,145,774 RGD:1624291
RGD:13792537
G Tdrd1 tudor domain containing 1 JBrowse link 1 277,639,670 277,685,236 RGD:1624291
G Tdrd12 tudor domain containing 12 JBrowse link 1 91,739,126 91,811,577 RGD:1624291
G Tdrd9 tudor domain containing 9 JBrowse link 6 136,536,636 136,650,481 RGD:1600115
RGD:1624291
G Tdrkh tudor and KH domain containing JBrowse link 2 195,649,813 195,674,217 RGD:1624291
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
positive regulation of miRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28b lin-28 homolog B JBrowse link 20 50,482,536 50,580,273 RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1600115
RGD:1624291
positive regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Hras HRas proto-oncogene, GTPase JBrowse link 1 214,178,404 214,181,841 RGD:1624291
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:1624291
RGD:1600115
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:1624291
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:1624291
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:1624291
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1624291
G Wdr75 WD repeat domain 75 JBrowse link 9 52,687,845 52,717,808 RGD:1624291
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1624291
RGD:1600115
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Ago3 argonaute RISC catalytic component 3 JBrowse link 5 144,355,792 144,436,509 RGD:1624291
G Ago4 argonaute RISC component 4 JBrowse link 5 144,501,875 144,557,165 RGD:1624291
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
RGD:13792537
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1624291
RGD:13792537
G Lin28a lin-28 homolog A JBrowse link 5 152,230,343 152,247,873 RGD:1624291
G Lin28b lin-28 homolog B JBrowse link 20 50,482,536 50,580,273 RGD:1624291
G Mrpl44 mitochondrial ribosomal protein L44 JBrowse link 9 85,542,763 85,547,814 RGD:13792537
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 3 63,489,081 63,507,918 RGD:1600115
RGD:1624291
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link 7 144,121,688 144,126,860 RGD:1600115
RGD:1624291
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
RGD:13792537
G Tut7 terminal uridylyl transferase 7 JBrowse link 17 5,225,854 5,279,674 RGD:1624291
RGD:13792537
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
RGD:13792537
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx3x DEAD-box helicase 3, X-linked JBrowse link X 10,400,363 10,414,010 RGD:1624291
G Dgcr8 DGCR8 microprocessor complex subunit JBrowse link 11 86,852,682 86,885,233 RGD:1624291
RGD:13792537
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1624291
RGD:13792537
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1600115
RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Mrpl44 mitochondrial ribosomal protein L44 JBrowse link 9 85,542,763 85,547,814 RGD:13792537
G Pus10 pseudouridine synthase 10 JBrowse link 14 108,411,941 108,479,696 RGD:1624291
G Srrt serrate, RNA effector molecule JBrowse link 12 22,457,898 22,471,090 RGD:1624291
prolyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07062535.1 RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1624291
RGD:13792537
G Pars2 prolyl-tRNA synthetase 2, mitochondrial JBrowse link 5 126,254,090 126,259,204 RGD:13792537
regulation of miRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1624291
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Rc3h2 ring finger and CCCH-type domains 2 JBrowse link 3 21,621,976 21,676,789 RGD:1624291
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9588272
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1624291
regulation of rRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:1624291
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
RGD:13792537
rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrm1 mitochondrial rRNA methyltransferase 1 JBrowse link 10 72,136,241 72,143,075 RGD:1600115
G Mrm3 mitochondrial rRNA methyltransferase 3 JBrowse link 10 64,398,308 64,406,193 RGD:1600115
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:13792537
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:13792537
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 JBrowse link 8 55,196,758 55,201,610 RGD:13792537
G Mettl15 methyltransferase like 15 JBrowse link 3 100,186,106 100,366,148 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
RGD:1624291
rRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC118772.1 RGD:13792537
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease JBrowse link 15 83,466,330 83,494,107 RGD:1624291
RGD:13792537
G Dis3l DIS3-like exosome 3'-5' exoribonuclease JBrowse link 8 69,771,211 69,807,880 RGD:1624291
RGD:13792537
G Drosha drosha ribonuclease III JBrowse link 2 62,887,267 63,000,307 RGD:1600115
G Ern2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 1 192,126,023 192,142,865 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:13601999
G Slfn14 schlafen family member 14 JBrowse link 10 70,493,340 70,504,810 RGD:1624291
G Trir telomerase RNA component interacting RNase JBrowse link 19 26,142,720 26,146,136 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
RGD:13792537
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmt2 base methyltransferase of 25S rRNA 2 homolog JBrowse link 4 40,064,131 40,136,074 RGD:1600115
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
RGD:13792537
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1600115
RGD:13792537
RGD:1624291
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mettl5 methyltransferase like 5 JBrowse link 3 56,101,597 56,113,823 RGD:1624291
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:1600115
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
RGD:13792537
G Tfb1m transcription factor B1, mitochondrial JBrowse link 1 44,433,116 44,474,674 RGD:1600115
RGD:13792537
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link 14 60,511,494 60,553,167 RGD:1600115
RGD:13792537
RGD:1624291
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:13792537
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1600115
G Ddx10 DEAD-box helicase 10 JBrowse link 8 57,667,472 57,830,504 RGD:13792537
G Ddx21 DExD-box helicase 21 JBrowse link 20 32,213,147 32,232,632 RGD:1600115
G Ddx27 DEAD-box helicase 27 JBrowse link 3 163,767,236 163,786,408 RGD:1624291
G Ddx47 DEAD-box helicase 47 JBrowse link 4 168,775,134 168,787,594 RGD:1624291
RGD:13792537
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:13792537
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:704356
G Ddx54 DEAD-box helicase 54 JBrowse link 12 41,469,642 41,484,887 RGD:13792537
G Ebna1bp2 EBNA1 binding protein 2 JBrowse link 5 137,458,692 137,463,255 RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog JBrowse link 3 133,178,591 133,232,358 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1600115
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link 8 61,607,021 61,607,909 RGD:1624291
RGD:13792537
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 JBrowse link 9 37,769,959 37,775,097 RGD:13792537
G Krr1 KRR1, small subunit processome component homolog JBrowse link 7 54,756,043 54,767,477 RGD:1600115
G LOC100362830 ribosomal protein S7-like JBrowse link 5 169,021,517 169,022,178 RGD:13792537
G LOC108348080 probable rRNA-processing protein EBP2 JBrowse link 5 137,670,134 137,674,730 RGD:13792537
G Lyar Ly1 antibody reactive JBrowse link 14 77,308,211 77,321,931 RGD:1600115
RGD:13792537
RGD:1624291
G Mphosph10 M-phase phosphoprotein 10 JBrowse link 1 125,212,869 125,229,060 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1600115
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
G Nol6 nucleolar protein 6 JBrowse link 5 57,444,448 57,473,803 RGD:13792537
G Nol8 nucleolar protein 8 JBrowse link 17 14,565,794 14,589,154 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:13792537
G Npm3 nucleophosmin/nucleoplasmin, 3 JBrowse link 1 265,504,105 265,506,080 RGD:1624291
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
G Pa2g4 proliferation-associated 2G4 JBrowse link 7 2,979,587 2,987,055 RGD:1600115
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:13792537
G Pih1d2 PIH1 domain containing 2 JBrowse link 8 55,050,284 55,060,289 RGD:13792537
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link X 72,004,413 72,011,667 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:13792537
G Rbfa ribosome binding factor A JBrowse link 18 76,704,223 76,714,387 RGD:1600115
G Rexo4 REX4 homolog, 3'-5' exonuclease JBrowse link 3 5,500,578 5,510,908 RGD:1600115
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:2291995
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
RGD:1600115
G Rpl14 ribosomal protein L14 JBrowse link 8 129,240,528 129,243,400 RGD:1624291
G Rpl26 ribosomal protein L26 JBrowse link 10 55,492,417 55,495,547 RGD:1624291
G Rpl27 ribosomal protein L27 JBrowse link 10 89,352,864 89,356,563 RGD:1624291
RGD:1600115
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:1624291
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1600115
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps24 ribosomal protein S24 JBrowse link 16 757,390 762,091 RGD:1624291
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:1624291
RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:1624291
RGD:13792537
G Rrp1 ribosomal RNA processing 1 JBrowse link 20 10,982,016 10,993,260 RGD:13792537
G Rrp12 ribosomal RNA processing 12 homolog JBrowse link 1 261,106,768 261,140,416 RGD:13792537
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1624291
G Rrp7a ribosomal RNA processing 7 homolog A JBrowse link 7 123,980,251 123,990,139 RGD:13792537
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1600115
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 8 115,179,899 115,188,551 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
G Utp11 UTP11, small subunit processome component JBrowse link 5 142,666,288 142,681,173 RGD:1600115
G Utp14a UTP14A small subunit processome component JBrowse link X 135,092,123 135,117,409 RGD:1600115
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:13792537
G Utp20 UTP20 small subunit processome component JBrowse link 7 29,296,360 29,378,105 RGD:1624291
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:1600115
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:1600115
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wdr36 WD repeat domain 36 JBrowse link 18 25,637,475 25,665,801 RGD:13792537
G Wdr55 WD repeat domain 55 JBrowse link 18 29,605,217 29,608,730 RGD:1600115
RGD:13792537
G Wdr74 WD repeat domain 74 JBrowse link 1 224,933,906 224,938,659 RGD:1624291
G Ybey ybeY metalloendoribonuclease JBrowse link 20 12,917,111 12,926,587 RGD:1600115
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
selenocysteinyl-tRNA(Sec) biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link 2 211,219,743 211,235,475 RGD:1600115
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase JBrowse link 14 60,657,730 60,687,950 RGD:1600115
seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link 2 211,219,743 211,235,475 RGD:1600115
RGD:13792537
RGD:1624291
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
snoRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC688828 similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16) JBrowse link 8 113,687,983 113,689,657 RGD:13792537
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291
RGD:13792537
G Nudt16l1 nudix hydrolase 16 like 1 JBrowse link 10 10,829,866 10,831,782 RGD:13792537
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633420
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:633420
RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:633420
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:633420
snoRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1624291
snoRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:13792537
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
RGD:13792537
snoRNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC108348079 RING finger protein 113A-like JBrowse link X 124,516,931 124,518,080 RGD:13792537
G Rnf113a1 ring finger protein 113A1 JBrowse link X 123,806,922 123,808,049 RGD:13792537
snRNA (adenine-N6)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Mettl4 methyltransferase like 4 JBrowse link 9 119,871,519 119,953,248 RGD:1624291
snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints12 integrator complex subunit 12 JBrowse link 2 238,253,114 238,270,722 RGD:13792537
G Ints14 integrator complex subunit 14 JBrowse link 8 70,446,157 70,471,140 RGD:13792537
G Ints2 integrator complex subunit 2 JBrowse link 10 73,632,805 73,690,952 RGD:13792537
G Ints5 integrator complex subunit 5 JBrowse link 1 225,091,612 225,096,390 RGD:13792537
G Ints6 integrator complex subunit 6 JBrowse link 15 45,844,050 45,929,996 RGD:13792537
G Ints6l integrator complex subunit 6 like JBrowse link X 158,835,334 158,887,055 RGD:13792537
G Ints7 integrator complex subunit 7 JBrowse link 13 110,257,571 110,310,413 RGD:13792537
G Ints8 integrator complex subunit 8 JBrowse link 5 24,446,002 24,493,819 RGD:13792537
G Toe1 target of EGR1, exonuclease JBrowse link 5 135,659,733 135,663,299 RGD:1624291
RGD:13792537
snRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbm7 RNA binding motif protein 7 JBrowse link 8 52,823,094 52,828,134 RGD:1624291
snRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mepce methylphosphate capping enzyme JBrowse link 12 21,721,246 21,725,965 RGD:1624291
snRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100910540 7SK snRNA methylphosphate capping enzyme-like JBrowse link 12 21,981,708 21,986,474 RGD:13792537
G Mepce methylphosphate capping enzyme JBrowse link 12 21,721,246 21,725,965 RGD:13792537
RGD:1624291
snRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints1 integrator complex subunit 1 JBrowse link 12 16,950,704 16,974,896 RGD:1624291
G Ints10 integrator complex subunit 10 JBrowse link 16 22,616,480 22,647,315 RGD:1624291
G Ints11 integrator complex subunit 11 JBrowse link 5 173,318,435 173,336,930 RGD:1624291
RGD:13792537
G Ints12 integrator complex subunit 12 JBrowse link 2 238,253,114 238,270,722 RGD:1624291
RGD:1600115
G Ints2 integrator complex subunit 2 JBrowse link 10 73,632,805 73,690,952 RGD:1624291
G Ints3 integrator complex subunit 3 JBrowse link 2 189,766,927 189,818,327 RGD:1624291
G Ints4 integrator complex subunit 4 JBrowse link 1 162,447,692 162,511,350 RGD:1624291
RGD:13792537
G Ints5 integrator complex subunit 5 JBrowse link 1 225,091,612 225,096,390 RGD:1624291
G Ints6 integrator complex subunit 6 JBrowse link 15 45,844,050 45,929,996 RGD:1624291
G Ints7 integrator complex subunit 7 JBrowse link 13 110,257,571 110,310,413 RGD:1624291
G Ints8 integrator complex subunit 8 JBrowse link 5 24,446,002 24,493,819 RGD:1624291
G Ints9 integrator complex subunit 9 JBrowse link 15 48,326,728 48,413,792 RGD:1624291
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1624291
RGD:1600115
snRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
threonyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:1600115
RGD:13792537
RGD:1624291
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:1624291
RGD:13792537
tRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1600115
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1600115
tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptcd1 pentatricopeptide repeat domain 1 JBrowse link 12 11,215,795 11,233,633 RGD:1600115
RGD:13792537
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
tRNA 3'-terminal CCA addition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
tRNA 3'-trailer cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr3k RNA polymerase III subunit K JBrowse link 3 177,374,812 177,379,009 RGD:1600115
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac1 elaC ribonuclease Z 1 JBrowse link 18 69,706,522 69,723,869 RGD:13792537
tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1600115
tRNA 5'-leader removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:1624291
RGD:1600115
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:1624291
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 12 22,259,713 22,260,754 RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:13792537
G Rpp14 ribonuclease P/MRP subunit p14 JBrowse link 15 18,625,963 18,636,157 RGD:1624291
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link 20 2,515,541 2,517,471 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1624291
RGD:13792537
RGD:1600115
G Rpp25l ribonuclease P/MRP subunit p25 like JBrowse link 5 58,096,037 58,097,577 RGD:13792537
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link 1 254,697,247 254,720,093 RGD:1624291
G Rpp38 ribonuclease P/MRP subunit p38 JBrowse link 17 78,915,450 78,919,144 RGD:1624291
RGD:13792537
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:1624291
RGD:13792537
RGD:1600115
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
tRNA acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:1600115
tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
RGD:13792537
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
tRNA aminoacylation for protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:1600115
G LOC317588 hypothetical protein LOC317588 JBrowse link X 137,934,296 137,952,151 RGD:1600115
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:13792537
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:13792537
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:13792537
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:13792537
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
tRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:1624291
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:13601999
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dus1l dihydrouridine synthase 1-like JBrowse link 10 109,972,018 109,979,113 RGD:1600115
G Dus2 dihydrouridine synthase 2 JBrowse link 19 37,990,374 38,033,590 RGD:1624291
RGD:13792537
G Dus3l dihydrouridine synthase 3-like JBrowse link 9 10,289,440 10,294,213 RGD:1600115
G Dus4l dihydrouridine synthase 4-like JBrowse link 6 50,925,987 50,943,546 RGD:1600115
tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:13792537
tRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dtd1 D-aminoacyl-tRNA deacylase 1 JBrowse link 3 138,770,573 138,931,544 RGD:13792537
G Dtd2 D-aminoacyl-tRNA deacylase 2 JBrowse link 6 72,781,229 72,786,835 RGD:13792537
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1600115
RGD:1624291
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:13792537
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A JBrowse link 6 136,244,466 136,250,496 RGD:13792537
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:13792537
G Mettl2 methyltransferase like 2 JBrowse link 10 93,353,944 93,367,769 RGD:1624291
G Mettl6 methyltransferase like 6 JBrowse link 16 7,559,964 7,588,841 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:13792537
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
RGD:13792537
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
G Tarbp1 TAR (HIV-1) RNA binding protein 1 JBrowse link 19 59,331,399 59,384,807 RGD:13792537
G Thada THADA, armadillo repeat containing JBrowse link 6 7,423,555 7,741,431 RGD:13792537
G Thumpd2 THUMP domain containing 2 JBrowse link 6 3,743,080 3,794,512 RGD:13792537
G Thumpd3 THUMP domain containing 3 JBrowse link 4 144,985,850 145,010,164 RGD:13792537
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link 17 80,824,652 80,859,585 RGD:1624291
RGD:1600115
G Trmo tRNA methyltransferase O JBrowse link 5 61,992,507 62,001,065 RGD:1624291
RGD:1600115
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:1600115
RGD:1624291
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1600115
G Trmt11 tRNA methyltransferase 11 homolog JBrowse link 1 29,432,109 29,576,079 RGD:1600115
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Trmt13 tRNA methyltransferase 13 homolog JBrowse link 2 219,615,665 219,628,824 RGD:13792537
G Trmt44 tRNA methyltransferase 44 JBrowse link 14 80,361,490 80,379,408 RGD:13792537
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
G Trmt6 tRNA methyltransferase 6 JBrowse link 3 125,458,692 125,470,413 RGD:1600115
G Trmt61a tRNA methyltransferase 61A JBrowse link 6 136,150,768 136,156,785 RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:1600115
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1600115
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 JBrowse link 17 36,451,031 37,157,882 RGD:1624291
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005588.1 RGD:1600115
G AABR07005618.1 RGD:13792537
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:1600115
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Ankrd16 ankyrin repeat domain 16 JBrowse link 17 70,384,883 70,398,089 RGD:1600115
RGD:1624291
G Dtwd1 DTW domain containing 1 JBrowse link 3 118,427,790 118,443,003 RGD:1600115
RGD:1624291
G Dtwd2 DTW domain containing 2 JBrowse link 18 43,857,371 43,945,732 RGD:1624291
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1624291
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1600115
G Trit1 tRNA isopentenyltransferase 1 JBrowse link 5 140,711,943 140,756,893 RGD:13792537
G Trub1 TruB pseudouridine synthase family member 1 JBrowse link 1 278,311,362 278,418,347 RGD:13792537
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1624291
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
tRNA N2-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt1 tRNA methyltransferase 1 JBrowse link 19 25,798,262 25,813,458 RGD:13792537
G Trmt1l tRNA methyltransferase 1-like JBrowse link 13 68,785,889 68,819,018 RGD:13792537
tRNA nucleoside ribose methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:1600115
tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat1 adenosine deaminase, tRNA-specific 1 JBrowse link 19 44,172,496 44,212,147 RGD:1624291
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 17 29,006,981 29,438,906 RGD:1624291
RGD:1600115
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:1624291
RGD:13792537
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 12 22,259,713 22,260,754 RGD:13792537
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link 20 2,515,541 2,517,471 RGD:13792537
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link 1 254,697,247 254,720,093 RGD:13792537
G Rpusd4 RNA pseudouridine synthase D4 JBrowse link 8 36,467,706 36,477,190 RGD:1600115
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:737671
RGD:1624291
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1624291
RGD:13792537
RGD:1600115
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase JBrowse link 7 126,756,140 126,772,749 RGD:1600115
G Trpt1 tRNA phosphotransferase 1 JBrowse link 1 222,250,995 222,255,994 RGD:13792537
G Trub2 TruB pseudouridine synthase family member 2 JBrowse link 3 8,338,479 8,348,746 RGD:1600115
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus1 pseudouridine synthase 1 JBrowse link 12 51,936,721 51,945,930 RGD:1624291
RGD:13792537
G Pus10 pseudouridine synthase 10 JBrowse link 14 108,411,941 108,479,696 RGD:13792537
RGD:1624291
G Pus3 pseudouridine synthase 3 JBrowse link 8 36,760,874 36,769,167 RGD:1624291
RGD:13792537
G Pus7 pseudouridine synthase 7 JBrowse link 4 7,889,727 7,931,357 RGD:1624291
G Pusl1 pseudouridine synthase like 1 JBrowse link 5 173,326,755 173,339,934 RGD:13792537
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:1600115
RGD:13792537
RGD:1624291
G Ddx1 DEAD-box helicase 1 JBrowse link 6 38,422,892 38,453,762 RGD:1624291
RGD:1600115
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:1600115
RGD:13792537
RGD:1624291
G Rtraf RNA transcription, translation and transport factor JBrowse link 15 4,882,925 4,893,890 RGD:1624291
G Trpt1 tRNA phosphotransferase 1 JBrowse link 1 222,250,995 222,255,994 RGD:1624291
RGD:13792537
G Tsen15 tRNA splicing endonuclease subunit 15 JBrowse link 13 69,765,093 69,781,019 RGD:1600115
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:1624291
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:1624291
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand JBrowse link 5 147,535,584 147,547,252 RGD:1624291
RGD:13792537
tRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link 17 80,824,652 80,859,585 RGD:1600115
RGD:1624291
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link 15 27,842,447 27,849,866 RGD:1600115
RGD:1624291
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 JBrowse link 9 53,084,042 53,098,029 RGD:1600115
G Tprkb Tp53rk binding protein JBrowse link 4 117,589,527 117,604,481 RGD:1600115
RGD:1624291
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat2 adenosine deaminase, tRNA-specific 2 JBrowse link 1 7,726,447 7,743,112 RGD:13792537
G Adat3 adenosine deaminase, tRNA-specific 3 JBrowse link 7 11,977,285 11,981,814 RGD:13792537
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:13792537
G Elp3 elongator acetyltransferase complex subunit 3 JBrowse link 15 48,942,866 49,005,074 RGD:13792537
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:1624291
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA wobble position uridine thiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:13792537
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:13792537
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:13792537
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase JBrowse link 7 126,756,140 126,772,749 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:13792537
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07053185.1 RGD:1600115
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Dph3 diphthamide biosynthesis 3 JBrowse link 16 8,202,048 8,207,492 RGD:13792537
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:1600115
G Elp2 elongator acetyltransferase complex subunit 2 JBrowse link 18 16,544,515 16,581,086 RGD:1600115
G Elp5 elongator acetyltransferase complex subunit 5 JBrowse link 10 56,578,980 56,590,706 RGD:1600115
G Elp6 elongator acetyltransferase complex subunit 6 JBrowse link 8 118,525,770 118,541,074 RGD:1600115
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Kti12 KTI12 chromatin associated homolog JBrowse link 5 128,464,035 128,465,557 RGD:13792537
G LOC365839 similar to elongation protein 4 homolog JBrowse link 2 186,630,203 186,631,703 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:1624291
RGD:1600115
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link 11 61,748,822 61,779,631 RGD:1624291
RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
tRNA-type intron splice site recognition and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:13792537
G Tsen34 tRNA splicing endonuclease subunit 34 JBrowse link 1 64,023,924 64,031,756 RGD:13792537
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 JBrowse link 1 64,092,224 64,100,061 RGD:13792537
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:13792537
tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars1 tryptophanyl-tRNA synthetase 1 JBrowse link 6 132,771,026 132,802,262 RGD:1600115
RGD:13792537
RGD:1624291
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars1 tyrosyl-tRNA synthetase 1 JBrowse link 5 147,375,350 147,403,578 RGD:1600115
U1 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
U2 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07035479.1 RGD:1600115
G Ints1 integrator complex subunit 1 JBrowse link 12 16,950,704 16,974,896 RGD:1624291
G LOC103689975 integrator complex subunit 1-like JBrowse link 12 18,073,980 18,082,353 RGD:13792537
U4 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
U5 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
U6 2'-O-snRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 2 231,866,888 231,882,002 RGD:1600115
RGD:1624291
U6 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1600115
RGD:1624291
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 19 10,105,750 10,118,701 RGD:1624291
RGD:13792537
RGD:1600115
valyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:1600115
RGD:13792537
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Tyw1 tRNA-yW synthesizing protein 1 homolog JBrowse link 12 29,824,990 29,919,240 RGD:13792537
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
G Tyw5 tRNA-yW synthesizing protein 5 JBrowse link 9 64,077,841 64,096,265 RGD:1624291
RGD:13792537

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Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      organic substance metabolic process 11297
        macromolecule metabolic process 9765
          nucleic acid metabolic process 4782
            RNA metabolic process 4290
              ncRNA metabolic process 489
                21U-RNA metabolic process + 0
                CUT metabolic process + 4
                antisense RNA metabolic process + 1
                miRNA metabolic process + 26
                ncRNA catabolic process + 37
                ncRNA deadenylation 1
                ncRNA polyadenylation + 2
                ncRNA processing + 390
                piRNA metabolic process + 18
                rRNA metabolic process + 242
                snRNA metabolic process + 38
                snoRNA metabolic process + 19
                tRNA metabolic process + 173
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleic acid metabolic process 4782
              RNA metabolic process 4290
                ncRNA metabolic process 489
                  21U-RNA metabolic process + 0
                  CUT metabolic process + 4
                  antisense RNA metabolic process + 1
                  miRNA metabolic process + 26
                  ncRNA catabolic process + 37
                  ncRNA deadenylation 1
                  ncRNA polyadenylation + 2
                  ncRNA processing + 390
                  piRNA metabolic process + 18
                  rRNA metabolic process + 242
                  snRNA metabolic process + 38
                  snoRNA metabolic process + 19
                  tRNA metabolic process + 173
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.