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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA replication-independent nucleosome organization
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Accession:GO:0034724 term browser browse the term
Definition:The formation or destruction of chromatin structures, occurring outside the context of DNA replication.
Synonyms:exact_synonym: DNA replication-independent nucleosome organisation


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DNA replication-independent nucleosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,429,526...15,603,197
Ensembl chr17:15,429,708...15,603,199
JBrowse link
G Hjurp Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) RGD PMID:19410544, PMID:19410545 NCBI chr 9:95,347,739...95,362,228
Ensembl chr 9:95,349,086...95,362,014
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:118,476,410...118,541,928
Ensembl chr 5:118,476,430...118,673,780
JBrowse link
G Mis18a MIS18 kinetochore protein A ISO
IBA
MGI:MGI:5441069 (MGI:MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971, PMID:21873635 MGI:MGI:5438906, RGD:13792537 NCBI chr11:30,880,231...30,893,262
Ensembl chr11:30,879,887...30,893,310
JBrowse link
G Nasp nuclear autoantigenic sperm protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Oip5 Opa interacting protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,413,662...111,422,320
Ensembl chr 3:111,416,536...111,422,203
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22391447)
Ensembl
UniProt
RGD
PMID:22391447 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Cabin1 calcineurin binding protein 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:13792537 NCBI chr20:13,836,032...13,963,003
Ensembl chr20:13,836,030...13,963,003
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hira histone cell cycle regulator ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100911837 protein HIRA-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,802,536...85,896,680
Ensembl chr11:85,802,605...85,895,613
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G Ubn1 ubinuclein 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,690,224...10,725,655
Ensembl chr10:10,690,224...10,725,655
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          chromatin organization 847
            chromatin assembly or disassembly 189
              DNA replication-independent nucleosome organization 27
                DNA replication-independent nucleosome assembly + 26
                DNA replication-independent nucleosome disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          organelle organization 4073
            chromosome organization 1250
              chromatin organization 847
                nucleosome organization 152
                  DNA replication-independent nucleosome organization 27
                    DNA replication-independent nucleosome assembly + 26
                    DNA replication-independent nucleosome disassembly 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.